Clone Sequence Records
BO08455.3prime Sequence
834 bp (793 high quality bases) assembled on 2006-01-06
> BO08455.3prime
ATGGTCTAGAAAGCTTGCGTAATCCGCAGCGGTGTTAGATAGGTAGTCGC
GACGTCCTATGTTTGAAGCTTGCTTGTTCTGAACAGCCTCAAGTTTTGGG
CACTCCGTGATGCGATGGCCCAGACCACCACAGTAGGTGCAGCCATGCGA
GTCACCCAGGTCCAGGTGCTGGTGTTCGGTCTCAGGTGCCAGTTCGTCCA
AGAAGTCCGGGACCTCTTGCTTGCCCTCGATTAGCAGGTGCTTCAGGTCG
AGCAGAACCGACTGCTCGGTAGTCTTGTTTATCAGCGTCGTAGCCAATCC
CTTAGTGTTGGAACGACCTGTGCGGCCAATACGATGCACATAGTTTTCAA
TATCGTCCGGCATGTCGTAGTTAATAACGTGTTGCACGTTAGGGAAGTCC
AGGCCCTTCGATGCCACGTCGGTGGCCACCAGCACATCTTTTTTGCCCAC
GCGGTAAGCATCGACTGCCCGCGATCGTTCTTCCTGATCCTTTCCGCCGT
GAATAGCCACCGCCTCCACGCCTTTCAACAGCAGATACTCATGTATGCAG
TCTACATCCTGCTTCTTCTCAGCAAAAATGAGCACGGGCGGCGCGGTCTT
CTGTAGGCAGTCCAGCAAATATACCACCTTTGCCTCTTGCTTAACGTACT
CAACCTGTTGGGTGACGTTCATTGACGCAGCACCTGCGCGACCCACATTT
ATTGTGACAGGCTTCACGAGAGCTGATCGAGCAAAGTTCTGGATCTTTTT
TGGCATGGTGGCAGAGAATAAAAGTGTCTGTCGCTGGCCTTTGAAGAAAG
AGAATATCGTACGAACGTCCTCTTCAAATCCCAT
BO08455.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:24:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14637-PA | 1860 | abs-RA | 1042..1857 | 834..19 | 4080 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 14:44:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| abs-RA | 1995 | CG14637-RA | 1124..1939 | 834..19 | 4080 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 14:44:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4234170..4234985 | 834..19 | 4080 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 14:44:03 has no hits.
BO08455.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:47:35 Download gff for
BO08455.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| abs-PA | 1042..1860 | 15..834 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:42:29 Download gff for
BO08455.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14637-PA | 1042..1860 | 15..834 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:58:58 Download gff for
BO08455.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| abs-RA | 1124..1942 | 15..834 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:38:56 Download gff for
BO08455.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| abs-RA | 1124..1942 | 15..834 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:38:56 Download gff for
BO08455.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4234170..4234984 | 20..834 | 100 | -- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:58:58 Download gff for
BO08455.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 59892..60706 | 20..834 | 100 | -- | Minus |
BO08455.5prime Sequence
952 bp (809 high quality bases) assembled on 2006-01-06
> BO08455.5prime
GAAGTTATCAGTCGACATGGCGCACGTAAAGCGGTATCGGAGGTCGTCTA
AGTCCTCGGAGGAAGGCGACCTGGACAACGAGGACTACGTGCCATACGTA
CCGGTGAAGGAGCGGAAGAAGCAGCACATGATAAAGCTGGGCAGGATCGT
GCAACTGGTTTCGGAAACGGCCCAGCCCAAGTCGTCAAGCGAGAATGAGA
ATGAAGACGACTCGCAGGGTGCGCACGATGTCGAGACCTGGGGACGCAAG
TACAACATTAGTCTGCTGGACCAGCACACAGAACTGAAGAAAATTGCCGA
GGCCAAAAAGTTGAGTGCCGTCGAAAAGCAGCTGCGAGAGGAGGAAAAGA
TTATGGAGAGCATTGCTCAGCAGAAGGCCCTTATGGGTGTGGCAGAGTTG
GCGAAGGGGATTCAGTACGAGCAGCCTATTAAAACAGCTTGGAAACCGCC
GCGTTACATTCGGGAAATGTCGGAGGAAGAGCGCGAGGCCGTTCGCCACG
AGTTGAGGATCCTAGTGGAGGGAGAAACCCCCAGCCCGCCAATTCGCAGC
TTCCGGGAAATGAAGTTCCCTAAAGGTATACTTAACGGCTTAGCGGCCAA
AGGCATTAAGAACCCGACCCCAATCCAAGTGCAAGGCCTGCCCACTGTAC
TAGCCGGCCGCGACCTAATTGGAATAGCCTTCACTGGGTCTGGAAAAACG
CTTGTCTTCGTGCTGCCAGTCATCATGTTTGCCCTGGAACAGGAGTATAG
TCTGCCTTTTGAGCGTAACGAGGGCCCCTACGGCCTGATCATTTGCCCGT
CCCGCGAACTGGCCAAGCAAACACACGAGATAATTTCACACTACAGCAAG
CACCTCCAGGCATGCGGAATGCCTGAGATTCGTTCCCTGCTGGCCATGGG
TGGTTTGCCGGTCAGCGAGGCCCTTGACGTCATCTCACGCGGCGTACATA
TT
BO08455.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:24:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14637-PA | 1860 | abs-RA | 1..870 | 17..886 | 4300 | 99.7 | Plus |
| CG14637-PA | 1860 | abs-RA | 874..936 | 890..952 | 315 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:08:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| abs-RA | 1995 | CG14637-RA | 83..1018 | 17..952 | 4605 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:08:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4233129..4234064 | 17..952 | 4605 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:08:42 has no hits.
BO08455.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:47:36 Download gff for
BO08455.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| abs-PA | 1..936 | 17..952 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:42:31 Download gff for
BO08455.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14637-PA | 1..936 | 17..952 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:03:55 Download gff for
BO08455.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| abs-RA | 83..1018 | 17..952 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:44:21 Download gff for
BO08455.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| abs-RA | 83..1018 | 17..952 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:44:21 Download gff for
BO08455.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4233129..4234064 | 17..952 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:03:55 Download gff for
BO08455.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 58851..59786 | 17..952 | 99 | | Plus |
BO08455.complete Sequence
1891 bp (1891 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631201
> BO08455.complete
GAAGTTATCAGTCGACATGGCGCACGTAAAGCGGTATCGGAGGTCGTCTA
AGTCCTCGGAGGAAGGCGACCTGGACAACGAGGACTACGTGCCATACGTA
CCGGTGAAGGAGCGGAAGAAGCAGCACATGATAAAGCTGGGCAGGATCGT
GCAACTGGTTTCGGAAACGGCCCAGCCCAAGTCGTCAAGCGAGAATGAGA
ATGAAGACGACTCGCAGGGTGCGCACGATGTCGAGACCTGGGGACGCAAG
TACAACATTAGTCTGCTGGACCAGCACACAGAACTGAAGAAAATTGCCGA
GGCCAAAAAGTTGAGTGCCGTCGAAAAGCAGCTGCGAGAGGAGGAAAAGA
TTATGGAGAGCATTGCTCAGCAGAAGGCCCTTATGGGTGTGGCAGAGTTG
GCGAAGGGGATTCAGTACGAGCAGCCTATTAAAACAGCTTGGAAACCGCC
GCGTTACATTCGGGAAATGTCGGAGGAAGAGCGCGAGGCCGTTCGCCACG
AGTTGAGGATCCTAGTGGAGGGAGAAACCCCCAGCCCGCCAATTCGCAGC
TTCCGGGAAATGAAGTTCCCTAAAGGTATACTTAACGGCTTAGCGGCCAA
AGGCATTAAGAACCCGACCCCAATCCAAGTGCAAGGCCTGCCCACTGTAC
TAGCCGGCCGCGACCTAATTGGAATAGCCTTCACTGGGTCTGGAAAAACG
CTTGTCTTCGTGCTGCCAGTCATCATGTTTGCCCTGGAACAGGAGTATAG
TCTGCCTTTTGAGCGTAACGAGGGCCCCTACGGCCTGATCATTTGCCCGT
CCCGCGAACTGGCCAAGCAAACACACGAGATAATTCAACACTACAGCAAG
CACCTCCAGGCATGCGGAATGCCTGAGATTCGTTCCTGCCTGGCCATGGG
TGGTTTGCCGGTCAGCGAGGCCCTTGACGTCATCTCACGCGGCGTACATA
TTGTGGTGGCGACCCCTGGTCGTCTAATGGATATGCTGGACAAGAAGATC
CTTACGCTGGACATGTGCCGGTACTTGTGCATGGACGAGGCTGACCGCAT
GATTGACATGGGATTTGAAGAGGACGTTCGTACGATATTCTCTTTCTTCA
AAGGCCAGCGACAGACACTTTTATTCTCTGCCACCATGCCAAAAAAGATC
CAGAACTTTGCTCGATCAGCTCTCGTGAAGCCTGTCACAATAAATGTGGG
TCGCGCAGGTGCTGCGTCAATGAACGTCACCCAACAGGTTGAGTACGTTA
AGCAAGAGGCAAAGGTGGTATATTTGCTGGACTGCCTACAGAAGACCGCG
CCGCCCGTGCTCATTTTTGCTGAGAAGAAGCAGGATGTAGACTGCATACA
TGAGTATCTGCTGTTGAAAGGCGTGGAGGCGGTGGCTATTCACGGCGGAA
AGGATCAGGAAGAACGATCGCGGGCAGTCGATGCTTACCGCGTGGGCAAA
AAAGATGTGCTGGTGGCCACCGACGTGGCATCGAAGGGCCTGGACTTCCC
TAACGTGCAACACGTTATTAACTACGACATGCCGGACGATATTGAAAACT
ATGTGCATCGTATTGGCCGCACAGGTCGTTCCAACACTAAGGGATTGGCT
ACGACGCTGATAAACAAGACTACCGAGCAGTCGGTTCTGCTCGACCTGAA
GCACCTGCTAATCGAGGGCAAGCAAGAGGTCCCGGACTTCTTGGACGAAC
TGGCACCTGAGACCGAACACCAGCACCTGGACCTGGGTGACTCGCATGGC
TGCACCTACTGTGGTGGTCTGGGCCATCGCATCACGGAGTGCCCAAAACT
TGAGGCTGTTCAGAACAAGCAAGCTTCAAACATAGGACGTCGCGACTACC
TATCTAACACCGCTGCGGATTACGCAAGCTTTCTAGACCAT
BO08455.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:37:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| abs-RA | 1860 | CG14637-PA | 1..1857 | 17..1873 | 9285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:37:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| abs-RA | 1995 | CG14637-RA | 83..1939 | 17..1873 | 9285 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:37:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4233129..4234985 | 17..1873 | 9285 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:37:50 has no hits.
BO08455.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:00:29 Download gff for
BO08455.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| abs-RA | 1..1860 | 17..1877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:18:48 Download gff for
BO08455.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| abs-RA | 87..1946 | 17..1877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:48:57 Download gff for
BO08455.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| abs-RA | 83..1939 | 17..1875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:00:29 Download gff for
BO08455.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| abs-RA | 87..1946 | 17..1877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:50:08 Download gff for
BO08455.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| abs-RA | 83..1939 | 17..1875 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:50:08 Download gff for
BO08455.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4233129..4234985 | 17..1875 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:48:57 Download gff for
BO08455.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 58851..60707 | 17..1875 | 99 | | Plus |
BO08455.pep Sequence
Translation from 16 to 1891
> BO08455.pep
MAHVKRYRRSSKSSEEGDLDNEDYVPYVPVKERKKQHMIKLGRIVQLVSE
TAQPKSSSENENEDDSQGAHDVETWGRKYNISLLDQHTELKKIAEAKKLS
AVEKQLREEEKIMESIAQQKALMGVAELAKGIQYEQPIKTAWKPPRYIRE
MSEEEREAVRHELRILVEGETPSPPIRSFREMKFPKGILNGLAAKGIKNP
TPIQVQGLPTVLAGRDLIGIAFTGSGKTLVFVLPVIMFALEQEYSLPFER
NEGPYGLIICPSRELAKQTHEIIQHYSKHLQACGMPEIRSCLAMGGLPVS
EALDVISRGVHIVVATPGRLMDMLDKKILTLDMCRYLCMDEADRMIDMGF
EEDVRTIFSFFKGQRQTLLFSATMPKKIQNFARSALVKPVTINVGRAGAA
SMNVTQQVEYVKQEAKVVYLLDCLQKTAPPVLIFAEKKQDVDCIHEYLLL
KGVEAVAIHGGKDQEERSRAVDAYRVGKKDVLVATDVASKGLDFPNVQHV
INYDMPDDIENYVHRIGRTGRSNTKGLATTLINKTTEQSVLLDLKHLLIE
GKQEVPDFLDELAPETEHQHLDLGDSHGCTYCGGLGHRITECPKLEAVQN
KQASNIGRRDYLSNTAADYASFLDH
BO08455.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:58:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| abs-PA | 619 | CG14637-PA | 1..619 | 1..619 | 3186 | 100 | Plus |
| bel-PA | 798 | CG9748-PA | 280..719 | 162..588 | 758 | 38.7 | Plus |
| bel-PB | 801 | CG9748-PB | 280..719 | 162..588 | 758 | 38.7 | Plus |
| Rm62-PH | 575 | CG10279-PH | 109..539 | 148..586 | 732 | 37.9 | Plus |
| Rm62-PD | 575 | CG10279-PD | 109..539 | 148..586 | 732 | 37.9 | Plus |
