Clone BO08456 Report

Search the DGRC for BO08456

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:84
Well:56
Vector:pDNR-Dual
Associated Gene/TranscriptUev1A-RA
Protein status:BO08456.pep: validated full length
Sequenced Size:469

Clone Sequence Records

BO08456.5prime Sequence

467 bp (466 high quality bases) assembled on 2006-01-06

> BO08456.5prime
GAAGTTATCAGTCGACATGGCGAATACATCAAGTACCGGCGTTGTGGTGC
CACGGAATTTCCGCTTACTGGAGGAGCTGGATCAGGGCCAGAAGGGCGTG
GGCGATGGCACCATATCGTGGGGCCTGGAGAACGACGACGACATGACGCT
CACCTACTGGATCGGCATGATCATCGGTCCGCCTAGAACACCATTCGAGA
ATCGAATGTATTCACTAAAGATCGAGTGCGGCGAACGCTATCCGGATGAG
CCACCAACGCTCCGGTTTATAACTAAAGTAAACATTAACTGCATTAATCA
GAACAATGGCGTGGTTGATCATAGATCAGTTCAGATGTTGGCCAGATGGA
GTCGCGAGTACAATATAAAAACGATGCTGCAGGAAATCCGTAGGATTATG
ACCATGAAAGAGAACCTGAAGCTGGCACAGCCGCCAGAAGGTAGCTGTTT
TGCAAGCTTTCTAGACC

BO08456.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:24:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG10640-PA 438 Uev1A-RA 1..435 17..451 2175 100 Plus
CG10640-PB 312 Uev1A-RB 1..309 143..451 1545 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:38:57
Subject Length Description Subject Range Query Range Score Percent Strand
Uev1A-RC 1189 CG10640-RC 27..461 17..451 2175 100 Plus
Uev1A-RA 1196 CG10640-RA 70..504 17..451 2175 100 Plus
Uev1A-RB 1609 CG10640-RB 207..615 43..451 2045 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:38:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5364943..5365086 187..44 720 100 Minus
3L 28110227 3L 5363878..5364016 451..313 695 100 Minus
3L 28110227 3L 5364082..5364209 315..188 640 100 Minus
Blast to na_te.dros performed on 2015-02-11 23:38:53 has no hits.

BO08456.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:47:38 Download gff for BO08456.5prime
Subject Subject Range Query Range Percent Splice Strand
Uev1A-PA 1..438 17..452 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:42:33 Download gff for BO08456.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10640-PA 1..438 17..452 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:55:03 Download gff for BO08456.5prime
Subject Subject Range Query Range Percent Splice Strand
Uev1A-RA 66..504 9..451 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:52:37 Download gff for BO08456.5prime
Subject Subject Range Query Range Percent Splice Strand
Uev1A-RA 66..504 9..451 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:52:37 Download gff for BO08456.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 5364943..5365085 45..187 100 <- Minus
3L 5363878..5364015 314..451 100 <- Minus
3L 5364084..5364209 188..313 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:55:03 Download gff for BO08456.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5356978..5357115 314..451 100 <- Minus
arm_3L 5357184..5357309 188..313 100 <- Minus
arm_3L 5358043..5358185 45..187 100 <- Minus

BO08456.3prime Sequence

467 bp (466 high quality bases) assembled on 2006-01-06

> BO08456.3prime
ATGGTCTAGAAAGCTTGCAAAACAGCTACCTTCTGGCGGCTGTGCCAGCT
TCAGGTTCTCTTTCATGGTCATAATCCTACGGATTTCCTGCAGCATCGTT
TTTATATTGTACTCGCGACTCCATCTGGCCAACATCTGAACTGATCTATG
ATCAACCACGCCATTGTTCTGATTAATGCAGTTAATGTTTACTTTAGTTA
TAAACCGGAGCGTTGGTGGCTCATCCGGATAGCGTTCGCCGCACTCGATC
TTTAGTGAATACATTCGATTCTCGAATGGTGTTCTAGGCGGACCGATGAT
CATGCCGATCCAGTAGGTGAGCGTCATGTCGTCGTCGTTCTCCAGGCCCC
ACGATATGGTGCCATCGCCCACGCCCTTCTGGCCCTGATCCAGCTCCTCC
AGTAAGCGGAAATTCCGTGGCACCACAACGCCGGTACTTGATGTATTCGC
CATGTCGACTGATAACT

BO08456.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:24:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG10640-PA 438 Uev1A-RA 1..435 453..19 2175 100 Minus
CG10640-PB 312 Uev1A-RB 1..309 327..19 1545 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:29:03
Subject Length Description Subject Range Query Range Score Percent Strand
Uev1A-RC 1189 CG10640-RC 27..461 453..19 2175 100 Minus
Uev1A-RA 1196 CG10640-RA 70..504 453..19 2175 100 Minus
Uev1A-RB 1609 CG10640-RB 207..615 427..19 2045 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:28:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5364943..5365086 283..426 720 100 Plus
3L 28110227 3L 5363878..5364016 19..157 695 100 Plus
3L 28110227 3L 5364082..5364209 155..282 640 100 Plus
Blast to na_te.dros performed on 2015-02-12 04:29:00 has no hits.

BO08456.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:47:37 Download gff for BO08456.3prime
Subject Subject Range Query Range Percent Splice Strand
Uev1A-PA 1..438 18..453 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:42:32 Download gff for BO08456.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10640-PA 1..438 18..453 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:46:47 Download gff for BO08456.3prime
Subject Subject Range Query Range Percent Splice Strand
Uev1A-RA 66..504 19..461 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:08:45 Download gff for BO08456.3prime
Subject Subject Range Query Range Percent Splice Strand
Uev1A-RA 66..504 19..461 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:08:45 Download gff for BO08456.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 5364943..5365085 283..425 100 <- Plus
3L 5363878..5364015 19..156 100 <- Plus
3L 5364084..5364209 157..282 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:46:47 Download gff for BO08456.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5356978..5357115 19..156 100 <- Plus
arm_3L 5357184..5357309 157..282 100 <- Plus
arm_3L 5358043..5358185 283..425 100 <- Plus

BO08456.complete Sequence

469 bp (469 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ631202

> BO08456.complete
GAAGTTATCAGTCGACATGGCGAATACATCAAGTACCGGCGTTGTGGTGC
CACGGAATTTCCGCTTACTGGAGGAGCTGGATCAGGGCCAGAAGGGCGTG
GGCGATGGCACCATATCGTGGGGCCTGGAGAACGACGACGACATGACGCT
CACCTACTGGATCGGCATGATCATCGGTCCGCCTAGAACACCATTCGAGA
ATCGAATGTATTCACTAAAGATCGAGTGCGGCGAACGCTATCCGGATGAG
CCACCAACGCTCCGGTTTATAACTAAAGTAAACATTAACTGCATTAATCA
GAACAATGGCGTGGTTGATCATAGATCAGTTCAGATGTTGGCCAGATGGA
GTCGCGAGTACAATATAAAAACGATGCTGCAGGAAATCCGTAGGATTATG
ACCATGAAAGAGAACCTGAAGCTGGCACAGCCGCCAGAAGGTAGCTGTTT
TGCAAGCTTTCTAGACCAT

BO08456.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:43:35
Subject Length Description Subject Range Query Range Score Percent Strand
Uev1A-RC 438 CG10640-PC 1..435 17..451 2175 100 Plus
Uev1A-RA 438 CG10640-PA 1..435 17..451 2175 100 Plus
Uev1A-RB 312 CG10640-PB 1..309 143..451 1545 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:43:36
Subject Length Description Subject Range Query Range Score Percent Strand
Uev1A-RC 1189 CG10640-RC 27..461 17..451 2175 100 Plus
Uev1A-RA 1196 CG10640-RA 70..504 17..451 2175 100 Plus
Uev1A-RB 1609 CG10640-RB 207..615 43..451 2045 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:43:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5364943..5365086 187..44 720 100 Minus
3L 28110227 3L 5363878..5364016 451..313 695 100 Minus
3L 28110227 3L 5364082..5364209 315..188 640 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:43:34 has no hits.

BO08456.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:12:18 Download gff for BO08456.complete
Subject Subject Range Query Range Percent Splice Strand
Uev1A-RA 1..438 17..452 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:33:12 Download gff for BO08456.complete
Subject Subject Range Query Range Percent Splice Strand
Uev1A-RA 66..504 9..451 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:40:12 Download gff for BO08456.complete
Subject Subject Range Query Range Percent Splice Strand
Uev1A-RA 70..504 17..453 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:12:18 Download gff for BO08456.complete
Subject Subject Range Query Range Percent Splice Strand
Uev1A-RA 66..504 9..451 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:29:15 Download gff for BO08456.complete
Subject Subject Range Query Range Percent Splice Strand
Uev1A-RA 70..504 17..453 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:29:15 Download gff for BO08456.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5363876..5364015 314..453 98 <- Minus
3L 5364084..5364209 188..313 100 <- Minus
3L 5364943..5365085 45..187 100 <- Minus
3L 5366129..5366156 17..44 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:40:12 Download gff for BO08456.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5358043..5358185 45..187 100 <- Minus
arm_3L 5359229..5359256 17..44 100   Minus
arm_3L 5356976..5357115 314..453 98 <- Minus
arm_3L 5357184..5357309 188..313 100 <- Minus

BO08456.pep Sequence

Translation from 16 to 469

> BO08456.pep
MANTSSTGVVVPRNFRLLEELDQGQKGVGDGTISWGLENDDDMTLTYWIG
MIIGPPRTPFENRMYSLKIECGERYPDEPPTLRFITKVNINCINQNNGVV
DHRSVQMLARWSREYNIKTMLQEIRRIMTMKENLKLAQPPEGSCFASFLD
H

BO08456.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:26:02
Subject Length Description Subject Range Query Range Score Percent Strand
Uev1A-PC 145 CG10640-PC 1..145 1..145 777 100 Plus
Uev1A-PA 145 CG10640-PA 1..145 1..145 777 100 Plus
Uev1A-PB 103 CG10640-PB 1..103 43..145 557 100 Plus
Ubc6-PC 151 CG2013-PC 30..114 42..129 140 33.7 Plus
Ubc6-PA 151 CG2013-PA 30..114 42..129 140 33.7 Plus