Clone Sequence Records
BO08456.5prime Sequence
467 bp (466 high quality bases) assembled on 2006-01-06
> BO08456.5prime
GAAGTTATCAGTCGACATGGCGAATACATCAAGTACCGGCGTTGTGGTGC
CACGGAATTTCCGCTTACTGGAGGAGCTGGATCAGGGCCAGAAGGGCGTG
GGCGATGGCACCATATCGTGGGGCCTGGAGAACGACGACGACATGACGCT
CACCTACTGGATCGGCATGATCATCGGTCCGCCTAGAACACCATTCGAGA
ATCGAATGTATTCACTAAAGATCGAGTGCGGCGAACGCTATCCGGATGAG
CCACCAACGCTCCGGTTTATAACTAAAGTAAACATTAACTGCATTAATCA
GAACAATGGCGTGGTTGATCATAGATCAGTTCAGATGTTGGCCAGATGGA
GTCGCGAGTACAATATAAAAACGATGCTGCAGGAAATCCGTAGGATTATG
ACCATGAAAGAGAACCTGAAGCTGGCACAGCCGCCAGAAGGTAGCTGTTT
TGCAAGCTTTCTAGACC
BO08456.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:24:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10640-PA | 438 | Uev1A-RA | 1..435 | 17..451 | 2175 | 100 | Plus |
CG10640-PB | 312 | Uev1A-RB | 1..309 | 143..451 | 1545 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:38:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Uev1A-RC | 1189 | CG10640-RC | 27..461 | 17..451 | 2175 | 100 | Plus |
Uev1A-RA | 1196 | CG10640-RA | 70..504 | 17..451 | 2175 | 100 | Plus |
Uev1A-RB | 1609 | CG10640-RB | 207..615 | 43..451 | 2045 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:38:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5364943..5365086 | 187..44 | 720 | 100 | Minus |
3L | 28110227 | 3L | 5363878..5364016 | 451..313 | 695 | 100 | Minus |
3L | 28110227 | 3L | 5364082..5364209 | 315..188 | 640 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:38:53 has no hits.
BO08456.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:47:38 Download gff for
BO08456.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Uev1A-PA | 1..438 | 17..452 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:42:33 Download gff for
BO08456.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10640-PA | 1..438 | 17..452 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:55:03 Download gff for
BO08456.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Uev1A-RA | 66..504 | 9..451 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:52:37 Download gff for
BO08456.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Uev1A-RA | 66..504 | 9..451 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:52:37 Download gff for
BO08456.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5364943..5365085 | 45..187 | 100 | <- | Minus |
3L | 5363878..5364015 | 314..451 | 100 | <- | Minus |
3L | 5364084..5364209 | 188..313 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:55:03 Download gff for
BO08456.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5356978..5357115 | 314..451 | 100 | <- | Minus |
arm_3L | 5357184..5357309 | 188..313 | 100 | <- | Minus |
arm_3L | 5358043..5358185 | 45..187 | 100 | <- | Minus |
BO08456.3prime Sequence
467 bp (466 high quality bases) assembled on 2006-01-06
> BO08456.3prime
ATGGTCTAGAAAGCTTGCAAAACAGCTACCTTCTGGCGGCTGTGCCAGCT
TCAGGTTCTCTTTCATGGTCATAATCCTACGGATTTCCTGCAGCATCGTT
TTTATATTGTACTCGCGACTCCATCTGGCCAACATCTGAACTGATCTATG
ATCAACCACGCCATTGTTCTGATTAATGCAGTTAATGTTTACTTTAGTTA
TAAACCGGAGCGTTGGTGGCTCATCCGGATAGCGTTCGCCGCACTCGATC
TTTAGTGAATACATTCGATTCTCGAATGGTGTTCTAGGCGGACCGATGAT
CATGCCGATCCAGTAGGTGAGCGTCATGTCGTCGTCGTTCTCCAGGCCCC
ACGATATGGTGCCATCGCCCACGCCCTTCTGGCCCTGATCCAGCTCCTCC
AGTAAGCGGAAATTCCGTGGCACCACAACGCCGGTACTTGATGTATTCGC
CATGTCGACTGATAACT
BO08456.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:24:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10640-PA | 438 | Uev1A-RA | 1..435 | 453..19 | 2175 | 100 | Minus |
CG10640-PB | 312 | Uev1A-RB | 1..309 | 327..19 | 1545 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:29:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Uev1A-RC | 1189 | CG10640-RC | 27..461 | 453..19 | 2175 | 100 | Minus |
Uev1A-RA | 1196 | CG10640-RA | 70..504 | 453..19 | 2175 | 100 | Minus |
Uev1A-RB | 1609 | CG10640-RB | 207..615 | 427..19 | 2045 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:28:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5364943..5365086 | 283..426 | 720 | 100 | Plus |
3L | 28110227 | 3L | 5363878..5364016 | 19..157 | 695 | 100 | Plus |
3L | 28110227 | 3L | 5364082..5364209 | 155..282 | 640 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:29:00 has no hits.
BO08456.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:47:37 Download gff for
BO08456.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Uev1A-PA | 1..438 | 18..453 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:42:32 Download gff for
BO08456.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10640-PA | 1..438 | 18..453 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:46:47 Download gff for
BO08456.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Uev1A-RA | 66..504 | 19..461 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:08:45 Download gff for
BO08456.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Uev1A-RA | 66..504 | 19..461 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:08:45 Download gff for
BO08456.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5364943..5365085 | 283..425 | 100 | <- | Plus |
3L | 5363878..5364015 | 19..156 | 100 | <- | Plus |
3L | 5364084..5364209 | 157..282 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:46:47 Download gff for
BO08456.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5356978..5357115 | 19..156 | 100 | <- | Plus |
arm_3L | 5357184..5357309 | 157..282 | 100 | <- | Plus |
arm_3L | 5358043..5358185 | 283..425 | 100 | <- | Plus |
BO08456.complete Sequence
469 bp (469 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631202
> BO08456.complete
GAAGTTATCAGTCGACATGGCGAATACATCAAGTACCGGCGTTGTGGTGC
CACGGAATTTCCGCTTACTGGAGGAGCTGGATCAGGGCCAGAAGGGCGTG
GGCGATGGCACCATATCGTGGGGCCTGGAGAACGACGACGACATGACGCT
CACCTACTGGATCGGCATGATCATCGGTCCGCCTAGAACACCATTCGAGA
ATCGAATGTATTCACTAAAGATCGAGTGCGGCGAACGCTATCCGGATGAG
CCACCAACGCTCCGGTTTATAACTAAAGTAAACATTAACTGCATTAATCA
GAACAATGGCGTGGTTGATCATAGATCAGTTCAGATGTTGGCCAGATGGA
GTCGCGAGTACAATATAAAAACGATGCTGCAGGAAATCCGTAGGATTATG
ACCATGAAAGAGAACCTGAAGCTGGCACAGCCGCCAGAAGGTAGCTGTTT
TGCAAGCTTTCTAGACCAT
BO08456.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:43:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Uev1A-RC | 438 | CG10640-PC | 1..435 | 17..451 | 2175 | 100 | Plus |
Uev1A-RA | 438 | CG10640-PA | 1..435 | 17..451 | 2175 | 100 | Plus |
Uev1A-RB | 312 | CG10640-PB | 1..309 | 143..451 | 1545 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:43:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Uev1A-RC | 1189 | CG10640-RC | 27..461 | 17..451 | 2175 | 100 | Plus |
Uev1A-RA | 1196 | CG10640-RA | 70..504 | 17..451 | 2175 | 100 | Plus |
Uev1A-RB | 1609 | CG10640-RB | 207..615 | 43..451 | 2045 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:43:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5364943..5365086 | 187..44 | 720 | 100 | Minus |
3L | 28110227 | 3L | 5363878..5364016 | 451..313 | 695 | 100 | Minus |
3L | 28110227 | 3L | 5364082..5364209 | 315..188 | 640 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:43:34 has no hits.
BO08456.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:12:18 Download gff for
BO08456.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Uev1A-RA | 1..438 | 17..452 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:33:12 Download gff for
BO08456.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Uev1A-RA | 66..504 | 9..451 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:40:12 Download gff for
BO08456.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Uev1A-RA | 70..504 | 17..453 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:12:18 Download gff for
BO08456.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Uev1A-RA | 66..504 | 9..451 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:29:15 Download gff for
BO08456.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Uev1A-RA | 70..504 | 17..453 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:29:15 Download gff for
BO08456.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5363876..5364015 | 314..453 | 98 | <- | Minus |
3L | 5364084..5364209 | 188..313 | 100 | <- | Minus |
3L | 5364943..5365085 | 45..187 | 100 | <- | Minus |
3L | 5366129..5366156 | 17..44 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:40:12 Download gff for
BO08456.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5358043..5358185 | 45..187 | 100 | <- | Minus |
arm_3L | 5359229..5359256 | 17..44 | 100 | | Minus |
arm_3L | 5356976..5357115 | 314..453 | 98 | <- | Minus |
arm_3L | 5357184..5357309 | 188..313 | 100 | <- | Minus |
BO08456.pep Sequence
Translation from 16 to 469
> BO08456.pep
MANTSSTGVVVPRNFRLLEELDQGQKGVGDGTISWGLENDDDMTLTYWIG
MIIGPPRTPFENRMYSLKIECGERYPDEPPTLRFITKVNINCINQNNGVV
DHRSVQMLARWSREYNIKTMLQEIRRIMTMKENLKLAQPPEGSCFASFLD
H
BO08456.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:26:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Uev1A-PC | 145 | CG10640-PC | 1..145 | 1..145 | 777 | 100 | Plus |
Uev1A-PA | 145 | CG10640-PA | 1..145 | 1..145 | 777 | 100 | Plus |
Uev1A-PB | 103 | CG10640-PB | 1..103 | 43..145 | 557 | 100 | Plus |
Ubc6-PC | 151 | CG2013-PC | 30..114 | 42..129 | 140 | 33.7 | Plus |
Ubc6-PA | 151 | CG2013-PA | 30..114 | 42..129 | 140 | 33.7 | Plus |