Clone Sequence Records
BO08457.3prime Sequence
614 bp (613 high quality bases) assembled on 2006-01-06
> BO08457.3prime
ATGGTCTAGAAAGCTTGCCACATTGCTGTCCGTGCCCACGGCACCGGTGA
AGGAGAAGGGCTGGGCGTTGTTCACAATCCCCGCTCGATCGTTGGTTTGG
GCAGGTGTGTTTCCTCCGAAGGTTTGCTGAGCAGCTGCCCGCATGTCCTC
GGCGGATGCTTTCTTGCCTAACGCCATCATGCCGTAAACCACGCCAGTGC
CAAAGATCAGCCCACTGCCGAATAAGCTGGCCAGTCCAAAGCACAGAATA
ATGGGCGGAATGGCCATGGCAATGTAGAGCCCGGCACGGAAGTACAAGGG
CTTAGATTCCACCTTTTCCGCGATCTCGTTCACCTGCCCAAAGCAGACGA
AACAGCAGGGAGCCTCCAAGAGCATCACCACAAATCCTGCCACCATTTGA
AGGATGCCAGCCACCAGGCAGGATACGCTGAGCGTGATGATGGAGAACAC
ATTCCACAGGCCGAAAAGAATGGCAAAGAAGGCGGCCACAATGCCCAGCA
ATCGACTTCCATATTTGAGATACCACGGCTGCTCCGGTCCAATTGGATCT
TGTTGATTCGGCCGTGCCAGCAGACCCGTTATCTTTTCCGCAAACGACAT
GTCGACTGATAACT
BO08457.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:24:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6151-PA | 585 | CG6151-RA | 1..582 | 600..19 | 2910 | 100 | Minus |
| CG6151-PB | 579 | CG6151-RB | 1..443 | 600..158 | 2215 | 100 | Minus |
| CG6151-PC | 474 | CG6151-RC | 1..440 | 600..161 | 2200 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:48:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fwe-RA | 1342 | CG6151-RA | 134..716 | 601..19 | 2915 | 100 | Minus |
| fwe-RB | 3020 | CG6151-RB | 134..593 | 601..142 | 2225 | 99.1 | Minus |
| fwe-RC | 2364 | CG6151-RC | 134..574 | 601..161 | 2205 | 100 | Minus |
| fwe-RB | 3020 | CG6151-RB | 2253..2394 | 160..19 | 710 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:48:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15813419..15813626 | 269..476 | 1040 | 100 | Plus |
| 3L | 28110227 | 3L | 15810707..15810848 | 19..160 | 710 | 100 | Plus |
| 3L | 28110227 | 3L | 15815936..15816057 | 477..598 | 610 | 100 | Plus |
| 3L | 28110227 | 3L | 15813246..15813353 | 161..268 | 540 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:48:19 has no hits.
BO08457.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:47:39 Download gff for
BO08457.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6151-PA | 1..585 | 16..600 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:42:34 Download gff for
BO08457.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6151-PA | 1..585 | 16..600 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:14:47 Download gff for
BO08457.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fwe-RA | 125..716 | 19..610 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:31:39 Download gff for
BO08457.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fwe-RA | 125..716 | 19..610 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:31:39 Download gff for
BO08457.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15810707..15810848 | 19..160 | 100 | <- | Plus |
| 3L | 15813246..15813353 | 161..268 | 100 | <- | Plus |
| 3L | 15813419..15813626 | 269..476 | 100 | <- | Plus |
| 3L | 15815936..15816059 | 477..601 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:14:47 Download gff for
BO08457.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15803807..15803948 | 19..160 | 100 | <- | Plus |
| arm_3L | 15806346..15806453 | 161..268 | 100 | <- | Plus |
| arm_3L | 15806519..15806726 | 269..476 | 100 | <- | Plus |
| arm_3L | 15809036..15809159 | 477..601 | 99 | | Plus |
BO08457.5prime Sequence
615 bp (614 high quality bases) assembled on 2006-01-06
> BO08457.5prime
GGAAGTGATGAGTGGACATGTGGGTTGCGGAAAAGATAACGGGTCTGCTG
GCGCGGGCGAGTCAACAGGATGCAATTGGACCGGAGCAGCCGGGGGATCT
CAAATATGGGAGTGGATTGCTGGGCATTGTGGCCGCCTTCTTTGCCATTC
TTTTCGGCCTGTGGAATGTGTTCTCCATCATCACGCTCAGCGTATCCTGC
CTGGTGGCTGGCATCCTTCAAATGGTGGCAGGATTTGTGGTGATGCTCTT
GGAGGCTCCCTGCTGTTTCGTCTGCTTTGGGCAGGTGAACGAGATCGCGG
AAAAGGTGGAATCTAAGCCCTTGTACTTCCGTGCCGGGCTCTACATTGCC
ATGGCCATTCCGCCCATTATTCTGTGCTTTGGACTGGCCAGCTTATTCGG
CAGTGGGCTGATCTTTGGCACTGGCGTGGTTTACGGCATGATGGCGTTAG
GCAAGAAAGCATCCGCCGAGGACATGCGGGCAGCTGCTCAGCAAACCTTC
GGAGGAAACACACCTGCCCAAACCAACGATCGAGCGGGGATTGTGAACAA
CGCCCAGCCCTTCTCCTTCACCGGTGCCGTGGGCACGGACAGCAATGTGG
CAAGCTTTCTAGACC
BO08457.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:24:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6151-PA | 585 | CG6151-RA | 8..582 | 25..599 | 2650 | 98.4 | Plus |
| CG6151-PB | 579 | CG6151-RB | 8..443 | 25..460 | 1955 | 97.9 | Plus |
| CG6151-PC | 474 | CG6151-RC | 8..440 | 25..457 | 1940 | 97.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:07:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fwe-RA | 1342 | CG6151-RA | 134..716 | 17..599 | 2750 | 98.1 | Plus |
| fwe-RB | 3020 | CG6151-RB | 134..593 | 17..476 | 2060 | 96.7 | Plus |
| fwe-RC | 2364 | CG6151-RC | 134..574 | 17..457 | 2040 | 97.5 | Plus |
| fwe-RB | 3020 | CG6151-RB | 2253..2394 | 458..599 | 710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:07:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15813419..15813626 | 349..142 | 1040 | 100 | Minus |
| 3L | 28110227 | 3L | 15810707..15810848 | 599..458 | 710 | 100 | Minus |
| 3L | 28110227 | 3L | 15813246..15813353 | 457..350 | 540 | 100 | Minus |
| 3L | 28110227 | 3L | 15815936..15816052 | 141..25 | 450 | 92.3 | Minus |
Blast to na_te.dros performed on 2015-02-12 12:07:11 has no hits.
BO08457.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:47:40 Download gff for
BO08457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6151-PA | 1..585 | 18..602 | 97 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:42:36 Download gff for
BO08457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6151-PA | 1..585 | 18..602 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:56:58 Download gff for
BO08457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fwe-RA | 134..716 | 17..599 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:02:08 Download gff for
BO08457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fwe-RA | 134..716 | 17..599 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:02:08 Download gff for
BO08457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15813246..15813353 | 350..457 | 100 | <- | Minus |
| 3L | 15813419..15813626 | 142..349 | 100 | <- | Minus |
| 3L | 15810707..15810848 | 458..599 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:56:58 Download gff for
BO08457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15803807..15803948 | 458..599 | 100 | <- | Minus |
| arm_3L | 15806346..15806453 | 350..457 | 100 | <- | Minus |
| arm_3L | 15806519..15806726 | 142..349 | 100 | <- | Minus |
BO08457.complete Sequence
616 bp (616 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631203
> BO08457.complete
GAAGTTATCAGTCGACATGTCGTTTGCGGAAAAGATAACGGGTCTGCTGG
CACGGCCGAATCAACAAGATCCAATTGGACCGGAGCAGCCGTGGTATCTC
AAATATGGAAGTCGATTGCTGGGCATTGTGGCCGCCTTCTTTGCCATTCT
TTTCGGCCTGTGGAATGTGTTCTCCATCATCACGCTCAGCGTATCCTGCC
TGGTGGCTGGCATCCTTCAAATGGTGGCAGGATTTGTGGTGATGCTCTTG
GAGGCTCCCTGCTGTTTCGTCTGCTTTGGGCAGGTGAACGAGATCGCGGA
AAAGGTGGAATCTAAGCCCTTGTACTTCCGTGCCGGGCTCTACATTGCCA
TGGCCATTCCGCCCATTATTCTGTGCTTTGGACTGGCCAGCTTATTCGGC
AGTGGGCTGATCTTTGGCACTGGCGTGGTTTACGGCATGATGGCGTTAGG
CAAGAAAGCATCCGCCGAGGACATGCGGGCAGCTGCTCAGCAAACCTTCG
GAGGAAACACACCTGCCCAAACCAACGATCGAGCGGGGATTGTGAACAAC
GCCCAGCCCTTCTCCTTCACCGGTGCCGTGGGCACGGACAGCAATGTGGC
AAGCTTTCTAGACCAT
BO08457.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:46:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fwe-RA | 585 | CG6151-PA | 1..582 | 17..598 | 2910 | 100 | Plus |
| fwe-RB | 579 | CG6151-PB | 1..459 | 17..475 | 2220 | 98.9 | Plus |
| fwe-RC | 474 | CG6151-PC | 1..440 | 17..456 | 2200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:46:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fwe-RA | 1342 | CG6151-RA | 134..716 | 16..598 | 2915 | 100 | Plus |
| fwe-RB | 3020 | CG6151-RB | 134..593 | 16..475 | 2225 | 98.9 | Plus |
| fwe-RC | 2364 | CG6151-RC | 134..574 | 16..456 | 2205 | 100 | Plus |
| fwe-RB | 3020 | CG6151-RB | 2253..2394 | 457..598 | 710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:46:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15813419..15813626 | 348..141 | 1040 | 100 | Minus |
| 3L | 28110227 | 3L | 15810707..15810848 | 598..457 | 710 | 100 | Minus |
| 3L | 28110227 | 3L | 15815936..15816057 | 140..19 | 610 | 100 | Minus |
| 3L | 28110227 | 3L | 15813246..15813353 | 456..349 | 540 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 12:46:51 has no hits.
BO08457.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:12:00 Download gff for
BO08457.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6151-RA | 1..585 | 17..601 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:32:51 Download gff for
BO08457.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6151-RA | 124..715 | 7..598 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:24:31 Download gff for
BO08457.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fwe-RA | 135..716 | 17..600 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:12:00 Download gff for
BO08457.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6151-RA | 124..715 | 7..598 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:04:26 Download gff for
BO08457.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fwe-RA | 135..716 | 17..600 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:04:26 Download gff for
BO08457.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15810704..15810848 | 457..600 | 98 | <- | Minus |
| 3L | 15813246..15813353 | 349..456 | 100 | <- | Minus |
| 3L | 15813419..15813626 | 141..348 | 100 | <- | Minus |
| 3L | 15815936..15816058 | 17..140 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:24:31 Download gff for
BO08457.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15806346..15806453 | 349..456 | 100 | <- | Minus |
| arm_3L | 15806519..15806726 | 141..348 | 100 | <- | Minus |
| arm_3L | 15803804..15803948 | 457..600 | 98 | <- | Minus |
| arm_3L | 15809036..15809158 | 17..140 | 99 | | Minus |
BO08457.pep Sequence
Translation from 16 to 616
> BO08457.pep
MSFAEKITGLLARPNQQDPIGPEQPWYLKYGSRLLGIVAAFFAILFGLWN
VFSIITLSVSCLVAGILQMVAGFVVMLLEAPCCFVCFGQVNEIAEKVESK
PLYFRAGLYIAMAIPPIILCFGLASLFGSGLIFGTGVVYGMMALGKKASA
EDMRAAAQQTFGGNTPAQTNDRAGIVNNAQPFSFTGAVGTDSNVASFLDH
BO08457.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:13:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fwe-PA | 194 | CG6151-PA | 1..194 | 1..194 | 998 | 100 | Plus |
| fwe-PB | 192 | CG6151-PB | 1..157 | 1..157 | 793 | 98.7 | Plus |
| fwe-PC | 157 | CG6151-PC | 1..146 | 1..146 | 754 | 100 | Plus |
