Clone Sequence Records
BO08458.3prime Sequence
952 bp (847 high quality bases) assembled on 2006-01-06
> BO08458.3prime
ATGGTCTAGAAAGCTTGCCTTTTTCTTGCCCCTGCCCAAGGTGAGAGTGT
GCGAACCATTGGCCATCTGGAGCCTACGACGCTGTAGCTCCTGGCAATCC
TCTTCCAGCTGCCGACGGGCCTCTTCCAGTTGGGCCTTTTCCTCCAAATG
CTCCCGTTTTAGCCGGTCGAACTTAGTATGCAATTCCTTCTCGTTGTCCT
TCAGCTCGTTCTCCTTCTGCTTGACCCGCTGAACGAACATTTGGCGCACT
TCCTCCTCCTTGGCCTGTAGGCAAGCCAGATGGTCGGATCGCTTCGACTC
GAAGGTCTGTTGGAAGGAGACCGGCTGGTTGTTGCTGTCCACGTCCACAA
AGCCCATTTGTTGTAGGCGCCGCTGGCGGAAGAGCTCATAGTGGCGTGTG
TGAGTCTGTTCGCGCAGATCCTCCATGTTAGTGCGAATGAGCATCTCGCG
CAGCTTCACAAAGTCGCAGTGCGCCTCGTTTTCTATGTGCACCGCTCCCC
ATGGATATTGGCGGGCACGAACCTGCTTTCCGGCCACCTTTACAAACTCC
GTACTGCCAACAACGGCAAAGGGTAGATGGCCGTTCATCGCAGCATTTGT
TTCGGACACGGTTTCGTCGTCCATGGGAAACTGGTATATGCTCACATTGT
TCCGCCGTAGTTCGTCCATTATGCGTTCCTTAAACCCCGACAGCTCCGAC
TTGGAGATGGTGTCGGCCTTCGCGATCACGGGAATGATGTTCACCCTAGT
GTCAAGCTGCTTCATGCACACCAAATCCATAGCTTTCAGACCATGGCCCG
TGGGACAGATGAAGTACAGGCAGGCGTGAACGCGTCCATCATGAGCACTG
GCCATCGCTCGCTGGATCTTGAGCTCTTCCTGCAAATACGCTTCAAACTG
GCTGTCCACGTACTCCACCAAAGCCTTGTAGCTGTCCGCTTTTATAACCT
GA
BO08458.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:24:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2916-PA | 1269 | Sep5-RA | 343..1266 | 942..19 | 4620 | 100 | Minus |
| CG2916-PB | 1269 | Sep5-RB | 343..1266 | 942..19 | 4620 | 100 | Minus |
| CG4173-PA | 1260 | Sep2-RA | 796..893 | 480..383 | 315 | 92.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:28:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sep5-RB | 1729 | CG2916-RB | 545..1478 | 952..19 | 4640 | 99.8 | Minus |
| Sep5-RA | 1704 | CG2916-RA | 605..1538 | 952..19 | 4640 | 99.8 | Minus |
| Sep2-RB | 1688 | CG4173-RB | 559..1366 | 928..121 | 925 | 75.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:28:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7960384..7961317 | 19..952 | 4640 | 99.8 | Plus |
| 3R | 32079331 | 3R | 20586451..20587258 | 121..928 | 905 | 74.1 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:28:47 has no hits.
BO08458.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:47:41 Download gff for
BO08458.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sep5-PA | 334..1269 | 18..951 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:42:37 Download gff for
BO08458.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2916-PB | 334..1269 | 18..951 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:46:43 Download gff for
BO08458.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sep5-RA | 606..1543 | 11..951 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:08:19 Download gff for
BO08458.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sep5-RA | 606..1543 | 11..951 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:08:19 Download gff for
BO08458.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7960379..7961316 | 11..951 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:46:43 Download gff for
BO08458.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3847884..3848821 | 11..951 | 99 | | Plus |
BO08458.5prime Sequence
937 bp (768 high quality bases) assembled on 2006-01-06
> BO08458.5prime
GAAGTTATCAGTCGACATGGTTCATTTAGTGACTGAAAAGAAGACGCAGG
AGGTGGCAACCAAAGTCCCCAGGCTCCTTCAACTCGGCGGCCACGTGGGG
TTCGACACCCTACCGGACCAGCTGGTCAACAAGAGCGTCCAGAATGGCTT
TAGCTTCAATATCCTATGCATCGGCGAGACCGCTCTCGGGAAATCCACTC
TCATGGACACACTGTTCAATACCAGTTTTGGATCTACACCGAGCCCGCAC
AACCTGCCCAATGTGAAGCTGAAGGCAAATACATACGAGCTGCAGGAGAG
CAACGTCCGCCTGAAGCTGACCGTCTGTGACACGATCGGATACGGAGATC
AGGTTAATAAAGCGGACAGCTACAAGGCTTTGGTGGAGTACGTGGACAGC
CAGTTTGAAGCGTATTTGCAGGAAGAGCTCAAGATCCAGCGAGCGATGGC
CAGTGCTCATGATGGACGCGTTCACGCCTGCCTGTACTTCATCTGTCCCA
CGGGCCATGGTCTGAAAGCTATGGATTTGGTGTGCATGAAGCAGCTTGAC
ACTAGGGTGAACATCATTCCCGTGATCGCGAAGGCCGACACCATCTCCAA
GTCGGAGCTGTCGGGGTTTAAGGAACGCATAATGGACGAACTACGGCGGA
ACAATGTGAGCATATACCAGTTTCCCATGGACGACGAAACCGTGTCCGAA
ACAAATGCTGCGATGAACGGCCATCTACCCTTTGCCGTTGTTGGCAGTAC
GGAGTTTGTAAAGGTGGCCGGAAAGCAGGTTCGTGCCCGCCAATATCCAT
GGGGAGCGGTGCACATAGAAAACGAGGCGCACTGCGACTTTGTGAAGCTG
CGCGAGATGCTCATTCGCACTAACATGGAGGATCTGCGCGAACAGACTCA
CACACGCCACTATGAGCTCTTCCGCCAGCGGCGCCTA
BO08458.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:24:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2916-PA | 1269 | Sep5-RA | 1..921 | 17..937 | 4605 | 100 | Plus |
| CG2916-PB | 1269 | Sep5-RB | 1..921 | 17..937 | 4605 | 100 | Plus |
| CG4173-PA | 1260 | Sep2-RA | 796..893 | 821..918 | 315 | 92.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:58:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sep5-RB | 1729 | CG2916-RB | 209..1133 | 13..937 | 4610 | 99.9 | Plus |
| Sep5-RA | 1704 | CG2916-RA | 269..1193 | 13..937 | 4610 | 99.9 | Plus |
| Sep2-RA | 1562 | CG4173-RA | 148..988 | 88..928 | 970 | 75.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:58:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7960729..7961653 | 937..13 | 4610 | 99.9 | Minus |
| 3R | 32079331 | 3R | 20586703..20587458 | 928..173 | 795 | 73.7 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:58:18 has no hits.
BO08458.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:47:42 Download gff for
BO08458.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sep5-PA | 1..920 | 17..936 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:42:38 Download gff for
BO08458.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2916-PB | 1..920 | 17..936 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:23:01 Download gff for
BO08458.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sep5-RA | 269..1192 | 13..936 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:32:08 Download gff for
BO08458.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sep5-RA | 269..1192 | 13..936 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:32:08 Download gff for
BO08458.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7960730..7961653 | 13..936 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:23:01 Download gff for
BO08458.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3848235..3849158 | 13..936 | 99 | | Minus |
BO08458.complete Sequence
1300 bp (1300 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631204
> BO08458.complete
GAAGTTATCAGTCGACATGGTTCATTTAGTGACTGAAAAGAAGACGCAGG
AGGTGGCAACCAAAGTCCCCAGGCTCCTTCAACTCGGCGGCCACGTGGGG
TTCGACACCCTACCGGACCAGCTGGTCAACAAGAGCGTCCAGAATGGCTT
TAGCTTCAATATCCTATGCATCGGCGAGACCGCTCTCGGGAAATCCACTC
TCATGGACACACTGTTCAATACCAGTTTTGGATCTACACCGAGCCCGCAC
AACCTGCCCAATGTGAAGCTGAAGGCAAATACATACGAGCTGCAGGAGAG
CAACGTCCGCCTGAAGCTGACCGTCTGTGACACGATCGGATACGGAGATC
AGGTTAATAAAGCGGACAGCTACAAGGCTTTGGTGGAGTACGTGGACAGC
CAGTTTGAAGCGTATTTGCAGGAAGAGCTCAAGATCCAGCGAGCGATGGC
CAGTGCTCATGATGGACGCGTTCACGCCTGCCTGTACTTCATCTGTCCCA
CGGGCCATGGTCTGAAAGCTATGGATTTGGTGTGCATGAAGCAGCTTGAC
ACTAGGGTGAACATCATTCCCGTGATCGCGAAGGCCGACACCATCTCCAA
GTCGGAGCTGTCGGGGTTTAAGGAACGCATAATGGACGAACTACGGCGGA
ACAATGTGAGCATATACCAGTTTCCCATGGACGACGAAACCGTGTCCGAA
ACAAATGCTGCGATGAACGGCCATCTACCCTTTGCCGTTGTTGGCAGTAC
GGAGTTTGTAAAGGTGGCCGGAAAGCAGGTTCGTGCCCGCCAATATCCAT
GGGGAGCGGTGCACATAGAAAACGAGGCGCACTGCGACTTTGTGAAGCTG
CGCGAGATGCTCATTCGCACTAACATGGAGGATCTGCGCGAACAGACTCA
CACACGCCACTATGAGCTCTTCCGCCAGCGGCGCCTACAACAAATGGGCT
TTGTGGACGTGGACAGCAACAACCAGCCGGTCTCCTTCCAACAGACCTTC
GAGTCGAAGCGATCCGACCATCTGGCTTGCCTACAGGCCAAGGAGGAGGA
AGTGCGCCAAATGTTCGTTCAGCGGGTCAAGCAGAAGGAGAACGAGCTGA
AGGACAACGAGAAGGAATTGCATACTAAGTTCGACCGGCTAAAACGGGAG
CATTTGGAGGAAAAGGCCCAACTGGAAGAGGCCCGTCGGCAGCTGGAAGA
GGATTGCCAGGAGCTACAGCGTCGTAGGCTCCAGATGGCCAATGGTTCGC
ACACTCTCACCTTGGGCAGGGGCAAGAAAAAGGCAAGCTTTCTAGACCAT
BO08458.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:53:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sep5-RB | 1269 | CG2916-PB | 1..1266 | 17..1282 | 6330 | 100 | Plus |
| Sep5-RA | 1269 | CG2916-PA | 1..1266 | 17..1282 | 6330 | 100 | Plus |
| Sep2-RA | 1260 | CG4173-PA | 63..1155 | 88..1180 | 1295 | 74.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:53:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sep5-RB | 1729 | CG2916-RB | 209..1478 | 13..1282 | 6335 | 99.9 | Plus |
| Sep5-RA | 1704 | CG2916-RA | 269..1538 | 13..1282 | 6335 | 99.9 | Plus |
| Sep2-RA | 1562 | CG4173-RA | 148..1240 | 88..1180 | 1295 | 74.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:53:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7960384..7961653 | 1282..13 | 6335 | 99.9 | Minus |
| 3R | 32079331 | 3R | 20586451..20587458 | 1180..173 | 1140 | 74.2 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:53:22 has no hits.
BO08458.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:32:53 Download gff for
BO08458.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sep5-RB | 210..1484 | 13..1290 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:34:48 Download gff for
BO08458.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sep5-RA | 273..1538 | 17..1284 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:12:01 Download gff for
BO08458.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sep5-RB | 210..1484 | 13..1290 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:28:55 Download gff for
BO08458.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sep5-RA | 273..1538 | 17..1284 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:28:55 Download gff for
BO08458.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7960382..7961649 | 17..1284 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:34:48 Download gff for
BO08458.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3847887..3849154 | 17..1284 | 99 | | Minus |
BO08458.pep Sequence
Translation from 16 to 1300
> BO08458.pep
MVHLVTEKKTQEVATKVPRLLQLGGHVGFDTLPDQLVNKSVQNGFSFNIL
CIGETALGKSTLMDTLFNTSFGSTPSPHNLPNVKLKANTYELQESNVRLK
LTVCDTIGYGDQVNKADSYKALVEYVDSQFEAYLQEELKIQRAMASAHDG
RVHACLYFICPTGHGLKAMDLVCMKQLDTRVNIIPVIAKADTISKSELSG
FKERIMDELRRNNVSIYQFPMDDETVSETNAAMNGHLPFAVVGSTEFVKV
AGKQVRARQYPWGAVHIENEAHCDFVKLREMLIRTNMEDLREQTHTRHYE
LFRQRRLQQMGFVDVDSNNQPVSFQQTFESKRSDHLACLQAKEEEVRQMF
VQRVKQKENELKDNEKELHTKFDRLKREHLEEKAQLEEARRQLEEDCQEL
QRRRLQMANGSHTLTLGRGKKKASFLDH
BO08458.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:13:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sep5-PB | 422 | CG2916-PB | 1..422 | 1..422 | 2182 | 100 | Plus |
| Sep5-PA | 422 | CG2916-PA | 1..422 | 1..422 | 2182 | 100 | Plus |
| Sep2-PA | 419 | CG4173-PA | 16..419 | 19..422 | 1651 | 74.5 | Plus |
| Sep2-PB | 360 | CG4173-PB | 1..360 | 63..422 | 1463 | 73.9 | Plus |
| pnut-PA | 539 | CG8705-PA | 117..517 | 21..423 | 777 | 39.1 | Plus |
