Clone BO08459 Report

Search the DGRC for BO08459

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:84
Well:59
Vector:pDNR-Dual
Associated Gene/TranscriptCG1542-RA
Protein status:BO08459.pep: validated full length
Sequenced Size:955

Clone Sequence Records

BO08459.3prime Sequence

905 bp (840 high quality bases) assembled on 2006-01-06

> BO08459.3prime
ATGGTCTAGAAAGCTTGCCTTTCTGCCCTTGGCCTTAATGCGTCGCGATT
TGCCAAGCCGCTTGTTGACCGAAGCACCTGCCTTTACGCCCCGCTGGCGC
CTGGAGGACTTGTCGCCATCCAATCCCGCGGAGGAGGACTTTGTGTTCCT
CTTGAGGCCCTTCTTCTTGCCGCCGAAGCCGAACTTCTTGTTGCGCTTCT
TGCGATTCTCGGCTGACTGCTTCTGCTTGGACTCAAGCGCCTTGGCGTCC
TCCAGGAAGTCCAGGTTTTTCAGCTTGCCCTTGCGGAACTTCTTCAGTTT
GTCCAGCATGTCCTTCTTCTCGGCTTCGCGTTGGACCTTGGTCTGTTTGG
CCAGCATCTTGCCCATCTTGCGCTGCTCGCGGATCTGCTTGATGCGCTCG
GATTTCGCCTGTCCTTGCTGTTTGGCCATCAGGTTGGCGCGCACCTTCTG
CATGTGCTCGTCGGACTTGGCCATTTCAGCGAAGTAGTCATCGGGTCGAC
GAGTCTTTATGCCCAGCTCGTGAAGGCGGGGAATGGCCTCCAGAACAGCA
CTTTGCGCCTGTCGGTGGAAGAGCATCTCCCTCTTGAAGTCATTCAGGAC
GGGATCCTCCTCGGGCCGAATGTAGGGCAGCTTGGCGTTGCCCTTGAAGA
GATTGGCCCGCTTCTGCTCGTGCTTCTCCAGCTGTACAGCGAGTTCCGGC
GCCAGTGGAGCTAGTGTGTTGATCATGTCCAGGCGTTCCAGCCAAGGCAG
TTGCATCTTGATAGCCTCTGTCTTGGCCAGCAGTTTGGTCACATCGTTCA
CTTTGTCTCTCTGGCCATTGAATTCCACATTTAGGCCTGGTTTCAAGTCG
CCTCGCTCAAATGCCGCTTGCAGCTCGGCATCTGAGTTATCCCCTGAGTC
GTAGC

BO08459.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:24:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG1542-PA 924 CG1542-RA 35..921 905..19 4435 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 11:38:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG1542-RA 1207 CG1542-RA 121..1007 905..19 4435 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 11:38:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31213813..31214584 790..19 3860 100 Minus
3R 32079331 3R 31213670..31213755 875..790 430 100 Minus
Blast to na_te.dros performed on 2015-02-03 11:38:47 has no hits.

BO08459.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:47:43 Download gff for BO08459.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1542-PA 35..924 15..905 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:42:39 Download gff for BO08459.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1542-PA 35..924 15..905 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:42:05 Download gff for BO08459.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1542-RA 121..1010 15..905 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:35:03 Download gff for BO08459.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1542-RA 121..1010 15..905 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:35:03 Download gff for BO08459.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 31213578..31213609 874..905 100 -> Minus
3R 31213672..31213755 790..873 100 -> Minus
3R 31213814..31214587 15..789 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:42:05 Download gff for BO08459.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27039300..27039331 874..905 100 -> Minus
arm_3R 27039394..27039477 790..873 100 -> Minus
arm_3R 27039536..27040309 15..789 99   Minus

BO08459.5prime Sequence

899 bp (804 high quality bases) assembled on 2006-01-06

> BO08459.5prime
GAAGTTATCAGTCGACATGTCGGACTTTGAAATGGAGGACAGTGCCTCGG
GCTACGACTCAGGGGATAACTCAGATGCCGAGCTGCAAGCGGCATTTGAG
CGAGGCGACTTGAAACCAGGCCTAAATGTGGAATTCAATGGCCAGAGAGA
CAAAGTGAACGATGTGACCAAACTGCTGGCCAAGACAGAGGCTATCAAGA
TGCAACTGCCTTGGCTGGAACGCCTGGACATGATCAACACACTAGCTCCA
CTGGCGCCGGAACTCGCTGTACAGCTGGAGAAGCACGAGCAGAAGCGGGC
CAATCTCTTCAAGGGCAACGCCAAGCTGCCCTACATTCGGCCCGAGGAGG
ATCCCGTCCTGAATGACTTCAAGAGGGAGATGCTCTTCCACCGACAGGCG
CAAAGTGCTGTTCTGGAGGCCATTCCCCGCCTTCACGAGCTGGGCATAAA
GACTCGTCGACCCGATGACTACTTCGCTGAAATGGCCAAGTCCGACGAGC
ACATGCAGAAGGTGCGCGCCAACCTGATGGCCAAACAGCAAGGACAGGCG
AAATCCGAGCGCATCAAGCAGATCCGCGAGCAGCGCAAGATGGGCAAGAT
GCTGGCCAAACAGACCAAGGTCCAACGCGAAGCCGAGAAGAAGGACATGC
TGGACAAACTGAAGAAGTTCCGCAAGGGCAAGCTGAAAAACCTGGACTTC
CTGGAGGACGCCAAGGCGCTTGAGTCCAAGCAGAAGCAGTCAGCCGAGAA
TCGCAAGAAGCGCAACAAGAAGTTCGGCTTCGGCGGCAAGAAGAAGGGCC
TCAAGAGGAACACAAAGTCCTCCTCCGCGGGATTGGATGGCGACAAGTCC
TCCAGGCGCCAGCGGGGCGTAAAGGCAGGTGCTTTCGGTCACAAGCGGC

BO08459.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:24:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG1542-PA 924 CG1542-RA 1..868 17..884 4340 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 01:35:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG1542-RA 1207 CG1542-RA 84..969 14..899 4385 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 01:34:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31213813..31214531 166..884 3595 100 Plus
3R 32079331 3R 31213670..31213755 81..166 430 100 Plus
3R 32079331 3R 31213541..31213609 14..82 345 100 Plus
Blast to na_te.dros performed on 2015-02-04 01:35:03 has no hits.

BO08459.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:47:45 Download gff for BO08459.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1542-PA 1..883 17..899 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:42:41 Download gff for BO08459.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1542-PA 1..883 17..899 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:42:22 Download gff for BO08459.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1542-RA 74..969 3..899 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:30:36 Download gff for BO08459.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1542-RA 74..969 3..899 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:30:36 Download gff for BO08459.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 31213531..31213609 3..82 95 -> Plus
3R 31213672..31213755 83..166 100 -> Plus
3R 31213814..31214546 167..899 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:42:22 Download gff for BO08459.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27039253..27039331 3..82 95 -> Plus
arm_3R 27039394..27039477 83..166 100 -> Plus
arm_3R 27039536..27040268 167..899 99   Plus

BO08459.complete Sequence

955 bp (955 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ631205

> BO08459.complete
GAAGTTATCAGTCGACATGTCGGACTTTGAAATGGAGGACAGTGCCTCGG
GCTACGACTCAGGGGATAACTCAGATGCCGAGCTGCAAGCGGCATTTGAG
CGAGGCGACTTGAAACCAGGCCTAAATGTGGAATTCAATGGCCAGAGAGA
CAAAGTGAACGATGTGACCAAACTGCTGGCCAAGACAGAGGCTATCAAGA
TGCAACTGCCTTGGCTGGAACGCCTGGACATGATCAACACACTAGCTCCA
CTGGCGCCGGAACTCGCTGTACAGCTGGAGAAGCACGAGCAGAAGCGGGC
CAATCTCTTCAAGGGCAACGCCAAGCTGCCCTACATTCGGCCCGAGGAGG
ATCCCGTCCTGAATGACTTCAAGAGGGAGATGCTCTTCCACCGACAGGCG
CAAAGTGCTGTTCTGGAGGCCATTCCCCGCCTTCACGAGCTGGGCATAAA
GACTCGTCGACCCGATGACTACTTCGCTGAAATGGCCAAGTCCGACGAGC
ACATGCAGAAGGTGCGCGCCAACCTGATGGCCAAACAGCAAGGACAGGCG
AAATCCGAGCGCATCAAGCAGATCCGCGAGCAGCGCAAGATGGGCAAGAT
GCTGGCCAAACAGACCAAGGTCCAACGCGAAGCCGAGAAGAAGGACATGC
TGGACAAACTGAAGAAGTTCCGCAAGGGCAAGCTGAAAAACCTGGACTTC
CTGGAGGACGCCAAGGCGCTTGAGTCCAAGCAGAAGCAGTCAGCCGAGAA
TCGCAAGAAGCGCAACAAGAAGTTCGGCTTCGGCGGCAAGAAGAAGGGCC
TCAAGAGGAACACAAAGTCCTCCTCCGCGGGATTGGATGGCGACAAGTCC
TCCAGGCGCCAGCGGGGCGTAAAGGCAGGTGCTTCGGTCAACAAGCGGCT
TGGCAAATCGCGACGCATTAAGGCCAAGGGCAGAAAGGCAAGCTTTCTAG
ACCAT

BO08459.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:05:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG1542-RA 924 CG1542-PA 1..921 17..937 4605 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:05:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG1542-RA 1207 CG1542-RA 84..1007 14..937 4620 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:05:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31213813..31214584 166..937 3860 100 Plus
3R 32079331 3R 31213670..31213755 81..166 430 100 Plus
3R 32079331 3R 31213541..31213609 14..82 345 100 Plus
Blast to na_te.dros performed on 2014-11-27 02:05:31 has no hits.

BO08459.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:12:02 Download gff for BO08459.complete
Subject Subject Range Query Range Percent Splice Strand
CG1542-RA 1..924 17..941 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:32:54 Download gff for BO08459.complete
Subject Subject Range Query Range Percent Splice Strand
CG1542-RA 122..1058 3..941 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:09:07 Download gff for BO08459.complete
Subject Subject Range Query Range Percent Splice Strand
CG1542-RA 87..1007 17..939 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:12:02 Download gff for BO08459.complete
Subject Subject Range Query Range Percent Splice Strand
CG1542-RA 122..1058 3..941 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:37:13 Download gff for BO08459.complete
Subject Subject Range Query Range Percent Splice Strand
CG1542-RA 87..1007 17..939 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:37:13 Download gff for BO08459.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31213544..31213609 17..82 100 -> Plus
3R 31213672..31213755 83..166 100 -> Plus
3R 31213814..31214584 167..939 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:09:07 Download gff for BO08459.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27039266..27039331 17..82 100 -> Plus
arm_3R 27039394..27039477 83..166 100 -> Plus
arm_3R 27039536..27040306 167..939 99   Plus

BO08459.pep Sequence

Translation from 16 to 955

> BO08459.pep
MSDFEMEDSASGYDSGDNSDAELQAAFERGDLKPGLNVEFNGQRDKVNDV
TKLLAKTEAIKMQLPWLERLDMINTLAPLAPELAVQLEKHEQKRANLFKG
NAKLPYIRPEEDPVLNDFKREMLFHRQAQSAVLEAIPRLHELGIKTRRPD
DYFAEMAKSDEHMQKVRANLMAKQQGQAKSERIKQIREQRKMGKMLAKQT
KVQREAEKKDMLDKLKKFRKGKLKNLDFLEDAKALESKQKQSAENRKKRN
KKFGFGGKKKGLKRNTKSSSAGLDGDKSSRRQRGVKAGASVNKRLGKSRR
IKAKGRKASFLDH

BO08459.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:13:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG1542-PA 307 CG1542-PA 1..307 1..307 1549 100 Plus