Clone Sequence Records
BO08459.3prime Sequence
905 bp (840 high quality bases) assembled on 2006-01-06
> BO08459.3prime
ATGGTCTAGAAAGCTTGCCTTTCTGCCCTTGGCCTTAATGCGTCGCGATT
TGCCAAGCCGCTTGTTGACCGAAGCACCTGCCTTTACGCCCCGCTGGCGC
CTGGAGGACTTGTCGCCATCCAATCCCGCGGAGGAGGACTTTGTGTTCCT
CTTGAGGCCCTTCTTCTTGCCGCCGAAGCCGAACTTCTTGTTGCGCTTCT
TGCGATTCTCGGCTGACTGCTTCTGCTTGGACTCAAGCGCCTTGGCGTCC
TCCAGGAAGTCCAGGTTTTTCAGCTTGCCCTTGCGGAACTTCTTCAGTTT
GTCCAGCATGTCCTTCTTCTCGGCTTCGCGTTGGACCTTGGTCTGTTTGG
CCAGCATCTTGCCCATCTTGCGCTGCTCGCGGATCTGCTTGATGCGCTCG
GATTTCGCCTGTCCTTGCTGTTTGGCCATCAGGTTGGCGCGCACCTTCTG
CATGTGCTCGTCGGACTTGGCCATTTCAGCGAAGTAGTCATCGGGTCGAC
GAGTCTTTATGCCCAGCTCGTGAAGGCGGGGAATGGCCTCCAGAACAGCA
CTTTGCGCCTGTCGGTGGAAGAGCATCTCCCTCTTGAAGTCATTCAGGAC
GGGATCCTCCTCGGGCCGAATGTAGGGCAGCTTGGCGTTGCCCTTGAAGA
GATTGGCCCGCTTCTGCTCGTGCTTCTCCAGCTGTACAGCGAGTTCCGGC
GCCAGTGGAGCTAGTGTGTTGATCATGTCCAGGCGTTCCAGCCAAGGCAG
TTGCATCTTGATAGCCTCTGTCTTGGCCAGCAGTTTGGTCACATCGTTCA
CTTTGTCTCTCTGGCCATTGAATTCCACATTTAGGCCTGGTTTCAAGTCG
CCTCGCTCAAATGCCGCTTGCAGCTCGGCATCTGAGTTATCCCCTGAGTC
GTAGC
BO08459.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:24:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1542-PA | 924 | CG1542-RA | 35..921 | 905..19 | 4435 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 11:38:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1542-RA | 1207 | CG1542-RA | 121..1007 | 905..19 | 4435 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 11:38:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31213813..31214584 | 790..19 | 3860 | 100 | Minus |
3R | 32079331 | 3R | 31213670..31213755 | 875..790 | 430 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 11:38:47 has no hits.
BO08459.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:47:43 Download gff for
BO08459.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1542-PA | 35..924 | 15..905 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:42:39 Download gff for
BO08459.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1542-PA | 35..924 | 15..905 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:42:05 Download gff for
BO08459.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1542-RA | 121..1010 | 15..905 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:35:03 Download gff for
BO08459.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1542-RA | 121..1010 | 15..905 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:35:03 Download gff for
BO08459.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31213578..31213609 | 874..905 | 100 | -> | Minus |
3R | 31213672..31213755 | 790..873 | 100 | -> | Minus |
3R | 31213814..31214587 | 15..789 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:42:05 Download gff for
BO08459.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27039300..27039331 | 874..905 | 100 | -> | Minus |
arm_3R | 27039394..27039477 | 790..873 | 100 | -> | Minus |
arm_3R | 27039536..27040309 | 15..789 | 99 | | Minus |
BO08459.5prime Sequence
899 bp (804 high quality bases) assembled on 2006-01-06
> BO08459.5prime
GAAGTTATCAGTCGACATGTCGGACTTTGAAATGGAGGACAGTGCCTCGG
GCTACGACTCAGGGGATAACTCAGATGCCGAGCTGCAAGCGGCATTTGAG
CGAGGCGACTTGAAACCAGGCCTAAATGTGGAATTCAATGGCCAGAGAGA
CAAAGTGAACGATGTGACCAAACTGCTGGCCAAGACAGAGGCTATCAAGA
TGCAACTGCCTTGGCTGGAACGCCTGGACATGATCAACACACTAGCTCCA
CTGGCGCCGGAACTCGCTGTACAGCTGGAGAAGCACGAGCAGAAGCGGGC
CAATCTCTTCAAGGGCAACGCCAAGCTGCCCTACATTCGGCCCGAGGAGG
ATCCCGTCCTGAATGACTTCAAGAGGGAGATGCTCTTCCACCGACAGGCG
CAAAGTGCTGTTCTGGAGGCCATTCCCCGCCTTCACGAGCTGGGCATAAA
GACTCGTCGACCCGATGACTACTTCGCTGAAATGGCCAAGTCCGACGAGC
ACATGCAGAAGGTGCGCGCCAACCTGATGGCCAAACAGCAAGGACAGGCG
AAATCCGAGCGCATCAAGCAGATCCGCGAGCAGCGCAAGATGGGCAAGAT
GCTGGCCAAACAGACCAAGGTCCAACGCGAAGCCGAGAAGAAGGACATGC
TGGACAAACTGAAGAAGTTCCGCAAGGGCAAGCTGAAAAACCTGGACTTC
CTGGAGGACGCCAAGGCGCTTGAGTCCAAGCAGAAGCAGTCAGCCGAGAA
TCGCAAGAAGCGCAACAAGAAGTTCGGCTTCGGCGGCAAGAAGAAGGGCC
TCAAGAGGAACACAAAGTCCTCCTCCGCGGGATTGGATGGCGACAAGTCC
TCCAGGCGCCAGCGGGGCGTAAAGGCAGGTGCTTTCGGTCACAAGCGGC
BO08459.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:24:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1542-PA | 924 | CG1542-RA | 1..868 | 17..884 | 4340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 01:35:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1542-RA | 1207 | CG1542-RA | 84..969 | 14..899 | 4385 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 01:34:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31213813..31214531 | 166..884 | 3595 | 100 | Plus |
3R | 32079331 | 3R | 31213670..31213755 | 81..166 | 430 | 100 | Plus |
3R | 32079331 | 3R | 31213541..31213609 | 14..82 | 345 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 01:35:03 has no hits.
BO08459.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:47:45 Download gff for
BO08459.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1542-PA | 1..883 | 17..899 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:42:41 Download gff for
BO08459.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1542-PA | 1..883 | 17..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:42:22 Download gff for
BO08459.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1542-RA | 74..969 | 3..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:30:36 Download gff for
BO08459.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1542-RA | 74..969 | 3..899 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:30:36 Download gff for
BO08459.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31213531..31213609 | 3..82 | 95 | -> | Plus |
3R | 31213672..31213755 | 83..166 | 100 | -> | Plus |
3R | 31213814..31214546 | 167..899 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:42:22 Download gff for
BO08459.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27039253..27039331 | 3..82 | 95 | -> | Plus |
arm_3R | 27039394..27039477 | 83..166 | 100 | -> | Plus |
arm_3R | 27039536..27040268 | 167..899 | 99 | | Plus |
BO08459.complete Sequence
955 bp (955 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631205
> BO08459.complete
GAAGTTATCAGTCGACATGTCGGACTTTGAAATGGAGGACAGTGCCTCGG
GCTACGACTCAGGGGATAACTCAGATGCCGAGCTGCAAGCGGCATTTGAG
CGAGGCGACTTGAAACCAGGCCTAAATGTGGAATTCAATGGCCAGAGAGA
CAAAGTGAACGATGTGACCAAACTGCTGGCCAAGACAGAGGCTATCAAGA
TGCAACTGCCTTGGCTGGAACGCCTGGACATGATCAACACACTAGCTCCA
CTGGCGCCGGAACTCGCTGTACAGCTGGAGAAGCACGAGCAGAAGCGGGC
CAATCTCTTCAAGGGCAACGCCAAGCTGCCCTACATTCGGCCCGAGGAGG
ATCCCGTCCTGAATGACTTCAAGAGGGAGATGCTCTTCCACCGACAGGCG
CAAAGTGCTGTTCTGGAGGCCATTCCCCGCCTTCACGAGCTGGGCATAAA
GACTCGTCGACCCGATGACTACTTCGCTGAAATGGCCAAGTCCGACGAGC
ACATGCAGAAGGTGCGCGCCAACCTGATGGCCAAACAGCAAGGACAGGCG
AAATCCGAGCGCATCAAGCAGATCCGCGAGCAGCGCAAGATGGGCAAGAT
GCTGGCCAAACAGACCAAGGTCCAACGCGAAGCCGAGAAGAAGGACATGC
TGGACAAACTGAAGAAGTTCCGCAAGGGCAAGCTGAAAAACCTGGACTTC
CTGGAGGACGCCAAGGCGCTTGAGTCCAAGCAGAAGCAGTCAGCCGAGAA
TCGCAAGAAGCGCAACAAGAAGTTCGGCTTCGGCGGCAAGAAGAAGGGCC
TCAAGAGGAACACAAAGTCCTCCTCCGCGGGATTGGATGGCGACAAGTCC
TCCAGGCGCCAGCGGGGCGTAAAGGCAGGTGCTTCGGTCAACAAGCGGCT
TGGCAAATCGCGACGCATTAAGGCCAAGGGCAGAAAGGCAAGCTTTCTAG
ACCAT
BO08459.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:05:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1542-RA | 924 | CG1542-PA | 1..921 | 17..937 | 4605 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:05:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1542-RA | 1207 | CG1542-RA | 84..1007 | 14..937 | 4620 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:05:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31213813..31214584 | 166..937 | 3860 | 100 | Plus |
3R | 32079331 | 3R | 31213670..31213755 | 81..166 | 430 | 100 | Plus |
3R | 32079331 | 3R | 31213541..31213609 | 14..82 | 345 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 02:05:31 has no hits.
BO08459.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:12:02 Download gff for
BO08459.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1542-RA | 1..924 | 17..941 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:32:54 Download gff for
BO08459.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1542-RA | 122..1058 | 3..941 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:09:07 Download gff for
BO08459.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1542-RA | 87..1007 | 17..939 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:12:02 Download gff for
BO08459.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1542-RA | 122..1058 | 3..941 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:37:13 Download gff for
BO08459.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1542-RA | 87..1007 | 17..939 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:37:13 Download gff for
BO08459.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31213544..31213609 | 17..82 | 100 | -> | Plus |
3R | 31213672..31213755 | 83..166 | 100 | -> | Plus |
3R | 31213814..31214584 | 167..939 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:09:07 Download gff for
BO08459.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27039266..27039331 | 17..82 | 100 | -> | Plus |
arm_3R | 27039394..27039477 | 83..166 | 100 | -> | Plus |
arm_3R | 27039536..27040306 | 167..939 | 99 | | Plus |
BO08459.pep Sequence
Translation from 16 to 955
> BO08459.pep
MSDFEMEDSASGYDSGDNSDAELQAAFERGDLKPGLNVEFNGQRDKVNDV
TKLLAKTEAIKMQLPWLERLDMINTLAPLAPELAVQLEKHEQKRANLFKG
NAKLPYIRPEEDPVLNDFKREMLFHRQAQSAVLEAIPRLHELGIKTRRPD
DYFAEMAKSDEHMQKVRANLMAKQQGQAKSERIKQIREQRKMGKMLAKQT
KVQREAEKKDMLDKLKKFRKGKLKNLDFLEDAKALESKQKQSAENRKKRN
KKFGFGGKKKGLKRNTKSSSAGLDGDKSSRRQRGVKAGASVNKRLGKSRR
IKAKGRKASFLDH
BO08459.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:13:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1542-PA | 307 | CG1542-PA | 1..307 | 1..307 | 1549 | 100 | Plus |