Clone Sequence Records
BO08464.3prime Sequence
928 bp (792 high quality bases) assembled on 2006-01-06
> BO08464.3prime
ATGGTCTAGAAAGCTTGCTTTATCGAAACTGCCGCTGTTGTTGCTCTGTG
TGCTGCTGTTGGCCACCGAGTTGTTCAGGTAGCGATTCCGCTTGGCCTTG
GTCATTTTGCAGGAGTTTACGGAGGCCGCGAAGCGCAGCGACTTGACGGA
CTCTTGGAAACAGTCTTGGAACGGCGAGACGTTGATGAACATAAGCGTTT
TCGAGTTGCCGCCCAGCGAGGGCATCAGCAGGTGCGTCAGCTTGGAGTTC
CTGTACGGGATGTGGTCCTGCTTCTGCAGCAGCGCCAGGATTACGTTGGT
GAGCTCCGATAGCGAGCGATTGATGTTCTTTGTCTCGGTCATCCGGGTGC
TCGTCTTGGGAGACTCAGAGCCGGCCAAATCCACCAGGTTTATGGAACCC
ACGGAGATCTCTTGCTTTTCGGCATGGCGTCCGATGAGCTCAAGCTTGGT
AACCGCGTGGGAACGAGAGGAGCGCTCGTTGCCAGCTGTCGAGGCGGTGG
CACGGTTCATCTTGGCCGTGTGCATGAGGTGGCGCAGGTGATTTGGATCC
AGAACCGTCTCCTCCGTTATGTTGGACACGTAGATGTCGTTCTTGTTGTT
CTTGGCCATTCGAATCTCCATGTCCTTCTGCTCGTTGCTCAGCAGATCGT
AGAGCACCTCGTTGTAGATCTCCAGAAAGGTGGCCTTGATCTCGTACTCC
CAGCCCAAGTTGCGATATCCCCGGATGGAGTCGAAGAGCAGATCCACCGT
GCGCGGTATGACGCCCACACTCTCCGGCACTCCGTCCATTGTGTAGGTCT
TGCCACTGCCCGTCTGTCCGTAGGCAAAGATGCAGATATTGTAGCCATCC
AGGGCCGACTGGATGAGCGGCGAGACATCTCGAAGATGTCCGACTGCGAG
GAGAGCGGGTGGAAGACCTGGTCGAATG
BO08464.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:24:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7831-PA | 2103 | ncd-RA | 1243..2100 | 876..19 | 4290 | 100 | Minus |
| CG7831-PA | 2103 | ncd-RA | 1190..1242 | 928..876 | 265 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:46:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ncd-RB | 2720 | CG7831-RB | 1691..2601 | 928..19 | 4530 | 99.9 | Minus |
| ncd-RA | 2340 | CG7831-RA | 1311..2221 | 928..19 | 4530 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:46:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29804409..29805319 | 19..928 | 4505 | 99.9 | Plus |
Blast to na_te.dros performed 2015-02-12 18:46:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-A | 13424 | TART-A 13424bp | 41..148 | 131..29 | 132 | 62.4 | Minus |
| TART-A | 13424 | TART-A 13424bp | 11219..11326 | 131..29 | 132 | 62.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6684..6763 | 106..29 | 125 | 63.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6750..6838 | 117..29 | 121 | 59.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6752..6784 | 61..29 | 120 | 84.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6773..6805 | 61..29 | 120 | 84.8 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1112..1155 | 61..18 | 112 | 72.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2385..2417 | 61..29 | 111 | 81.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2322..2354 | 61..29 | 110 | 88.2 | Minus |
BO08464.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:47:51 Download gff for
BO08464.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ncd-PA | 1190..2103 | 15..928 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:42:50 Download gff for
BO08464.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7831-PA | 1190..2103 | 15..928 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:14:36 Download gff for
BO08464.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ncd-RA | 1311..2226 | 14..928 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:23:17 Download gff for
BO08464.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ncd-RA | 1311..2226 | 14..928 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:23:17 Download gff for
BO08464.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29804404..29805319 | 14..928 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:14:36 Download gff for
BO08464.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25630126..25631041 | 14..928 | 99 | | Plus |
BO08464.5prime Sequence
860 bp (859 high quality bases) assembled on 2006-01-06
> BO08464.5prime
GAAGTTATCAGTCGACATGGAATCCCGGCTACCGAAACCGTCGGGCCTGA
AGAAACCCCAAATGCCGATTAAAACCGTGCTGCCCACAGATCGAATTCGC
GCAGGATTGGGAGGTGGAGCCGCTGGAGCAGGCGCCTTCAATGTCAATGC
CAACCAGACATACTGCGGCAACTTATTGCCGCCCCTCTCAAGGGACCTCA
ACAATCTGCCCCAGGTGCTGGAGCGTCGCGGAGGAGGAGCACGTGCCGCC
TCCCCAGAGCCCATGAAGTTGGGCCACCGGGCCAAGCTGAGACGTAGCCG
TAGCGCTTGCGACATCAACGAACTGCGTGGTAACAAGCGCACTGCGGCTG
CTCCTTCATTGCCCAGCATTCCCAGCAAAGTATCCCGCCTGGGCGGTGCA
CTCACTGTTTCCAGCCAGCGACTAGTGCGTCCTGCGGCGCCTTCGTCAAT
AACAGCAACAGCTGTCAAAAGACCACCAGTAACGCGTCCTGCTCCACGGG
CTGCAGGAGGAGCAGCCGCCAAGAAACCAGCAGGAACAGGAGCAGCAGCT
TCGTCAGGAGCCGCGGCTGCTGCTCCCAAGCGCATCGCTCCCTACGACTT
CAAGGCCCGCTTCCACGATCTGCTAGAGAAGCACAAGGTGCTTAAGACAA
AGTACGAAAAGCAAACAGAGGACATGGGCGAGCTGGAGTCCATGCCTCAG
CAACTGGAGGAGACGCAGAACAAGCTTATCGAGACGGAGTCCTCGCTGAA
GAACACCCAGAGCGACAACGAGTGTCTTCAGAGGCAGGTGAAGCAGCATA
CCGCCAAAATTGAAACAATCACATCGACGCTGGGCAGGACCAAAGAGGAG
CTATCCGAGC
BO08464.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:24:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7831-PA | 2103 | ncd-RA | 1..844 | 17..860 | 4220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:59:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ncd-RB | 2720 | CG7831-RB | 502..1345 | 17..860 | 4220 | 100 | Plus |
| ncd-RA | 2340 | CG7831-RA | 122..965 | 17..860 | 4220 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:59:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29805724..29806346 | 860..238 | 3115 | 100 | Minus |
| 3R | 32079331 | 3R | 29806404..29806626 | 239..17 | 1115 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 12:59:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2729..2880 | 416..573 | 136 | 57 | Plus |
BO08464.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:47:52 Download gff for
BO08464.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ncd-PA | 1..844 | 17..860 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:42:53 Download gff for
BO08464.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7831-PA | 1..844 | 17..860 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:28:18 Download gff for
BO08464.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ncd-RA | 113..965 | 9..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:10:56 Download gff for
BO08464.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ncd-RA | 113..965 | 9..860 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:10:56 Download gff for
BO08464.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29806404..29806632 | 11..239 | 98 | <- | Minus |
| 3R | 29805724..29806344 | 240..860 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:28:18 Download gff for
BO08464.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25631446..25632066 | 240..860 | 100 | <- | Minus |
| arm_3R | 25632126..25632354 | 11..239 | 98 | <- | Minus |
BO08464.complete Sequence
2134 bp (2134 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631206
> BO08464.complete
GAAGTTATCAGTCGACATGGAATCCCGGCTACCGAAACCGTCGGGCCTGA
AGAAACCCCAAATGCCGATTAAAACCGTGCTGCCCACAGATCGAATTCGC
GCAGGATTGGGAGGTGGAGCCGCTGGAGCAGGCGCCTTCAATGTCAATGC
CAACCAGACATACTGCGGCAACTTATTGCCGCCCCTCTCAAGGGACCTCA
ACAATCTGCCCCAGGTGCTGGAGCGTCGCGGAGGAGGAGCACGTGCCGCC
TCCCCAGAGCCCATGAAGTTGGGCCACCGGGCCAAGCTGAGACGTAGCCG
TAGCGCTTGCGACATCAACGAACTGCGTGGTAACAAGCGCACTGCGGCTG
CTCCTTCATTGCCCAGCATTCCCAGCAAAGTATCCCGCCTGGGCGGTGCA
CTCACTGTTTCCAGCCAGCGACTAGTGCGTCCTGCGGCGCCTTCGTCAAT
AACAGCAACAGCTGTCAAAAGACCACCAGTAACGCGTCCTGCTCCACGGG
CTGCAGGAGGAGCAGCCGCCAAGAAACCAGCAGGAACAGGAGCAGCAGCT
TCGTCAGGAGCCGCGGCTGCTGCTCCCAAGCGCATCGCTCCCTACGACTT
CAAGGCCCGCTTCCACGATCTGCTAGAGAAGCACAAGGTGCTTAAGACAA
AGTACGAAAAGCAAACAGAGGACATGGGCGAGCTGGAGTCCATGCCTCAG
CAACTGGAGGAGACGCAGAACAAGCTTATCGAGACGGAGTCCTCGCTGAA
GAACACCCAGAGCGACAACGAGTGTCTTCAGAGGCAGGTGAAGCAGCATA
CCGCCAAAATTGAAACAATCACATCGACGCTGGGCAGGACCAAAGAGGAG
CTATCCGAGCTGCAAGCAATACATGAGAAAGTAAAAACGGAGCATGCTGC
TCTAAGCACAGAAGTGGTGCATCTGCGCCAGCGCACCGAGGAACTCCTGC
GCTGCAATGAGCAGCAGGCCGCCGAGCTGGAGACCTGCAAAGAGCAGCTC
TTCCAGTCGAACATGGAGCGCAAAGAGCTGCACAACACGGTCATGGACCT
GCGCGGCAACATCCGGGTCTTCTGTCGAATACGACCGCCGCTGGAGTCCG
AGGAGAACCGTATGTGTTGCACCTGGACCTATCACGACGAGTCCACCGTG
GAGCTGCAGAGCATTGACGCACAGGCCAAAAGCAAGATGGGCCAGCAGAT
CTTCTCATTCGACCAGGTCTTCCACCCGCTCTCCTCGCAGTCGGACATCT
TCGAGATGGTCTCGCCGCTCATCCAGTCGGCCCTGGATGGCTACAATATC
TGCATCTTTGCCTACGGACAGACGGGCAGTGGCAAGACCTACACAATGGA
CGGAGTGCCGGAGAGTGTGGGCGTCATACCGCGCACGGTGGATCTGCTCT
TCGACTCCATCCGGGGATATCGCAACTTGGGCTGGGAGTACGAGATCAAG
GCCACCTTTCTGGAGATCTACAACGAGGTGCTCTACGATCTGCTGAGCAA
CGAGCAGAAGGACATGGAGATTCGAATGGCCAAGAACAACAAGAACGACA
TCTACGTGTCCAACATAACGGAGGAGACGGTTCTGGATCCAAATCACCTG
CGCCACCTCATGCACACGGCCAAGATGAACCGTGCCACCGCCTCGACAGC
TGGCAACGAGCGCTCCTCTCGTTCCCACGCGGTTACCAAGCTTGAGCTCA
TCGGACGCCATGCCGAAAAGCAAGAGATCTCCGTGGGTTCCATAAACCTG
GTGGATTTGGCCGGCTCTGAGTCTCCCAAGACGAGCACCCGGATGACCGA
GACAAAGAACATCAATCGCTCGCTATCGGAGCTCACCAACGTAATCCTGG
CGCTGCTGCAGAAGCAGGACCACATCCCGTACAGGAACTCCAAGCTGACG
CACCTGCTGATGCCCTCGCTGGGCGGCAACTCGAAAACGCTTATGTTCAT
CAACGTCTCGCCGTTCCAAGACTGTTTCCAAGAGTCCGTCAAGTCGCTGC
GCTTCGCGGCCTCCGTAAACTCCTGCAAAATGACCAAGGCCAAGCGGAAT
CGCTACCTGAACAACTCGGTGGCCAACAGCAGCACACAGAGCAACAACAG
CGGCAGTTTCGATAAAGCAAGCTTTCTAGACCAT
BO08464.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:02:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ncd-RB | 2103 | CG7831-PB | 1..2100 | 17..2116 | 10500 | 100 | Plus |
| ncd-RA | 2103 | CG7831-PA | 1..2100 | 17..2116 | 10500 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:03:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ncd-RB | 2720 | CG7831-RB | 502..2601 | 17..2116 | 10500 | 100 | Plus |
| ncd-RA | 2340 | CG7831-RA | 122..2221 | 17..2116 | 10500 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:02:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29804409..29805649 | 2116..876 | 6205 | 100 | Minus |
| 3R | 32079331 | 3R | 29805707..29806346 | 877..238 | 3200 | 100 | Minus |
| 3R | 32079331 | 3R | 29806404..29806626 | 239..17 | 1115 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 01:02:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2729..2880 | 416..573 | 136 | 57 | Plus |
| TART-A | 13424 | TART-A 13424bp | 41..148 | 2004..2106 | 132 | 62.4 | Plus |
| TART-A | 13424 | TART-A 13424bp | 11219..11326 | 2004..2106 | 132 | 62.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6684..6763 | 2029..2106 | 125 | 63.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6750..6838 | 2018..2106 | 121 | 59.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6752..6784 | 2074..2106 | 120 | 84.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6773..6805 | 2074..2106 | 120 | 84.8 | Plus |
BO08464.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:00:30 Download gff for
BO08464.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ncd-RA | 1..2103 | 17..2120 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:18:50 Download gff for
BO08464.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ncd-RA | 493..2606 | 9..2121 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:43:16 Download gff for
BO08464.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ncd-RA | 122..2221 | 17..2118 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:00:30 Download gff for
BO08464.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ncd-RA | 493..2606 | 9..2121 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:17:10 Download gff for
BO08464.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ncd-RA | 122..2221 | 17..2118 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:17:10 Download gff for
BO08464.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29804407..29805647 | 878..2118 | 99 | <- | Minus |
| 3R | 29805707..29806344 | 240..877 | 100 | <- | Minus |
| 3R | 29806404..29806626 | 17..239 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:43:16 Download gff for
BO08464.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25630129..25631369 | 878..2118 | 99 | <- | Minus |
| arm_3R | 25631429..25632066 | 240..877 | 100 | <- | Minus |
| arm_3R | 25632126..25632348 | 17..239 | 100 | | Minus |
BO08464.pep Sequence
Translation from 16 to 2134
> BO08464.pep
MESRLPKPSGLKKPQMPIKTVLPTDRIRAGLGGGAAGAGAFNVNANQTYC
GNLLPPLSRDLNNLPQVLERRGGGARAASPEPMKLGHRAKLRRSRSACDI
NELRGNKRTAAAPSLPSIPSKVSRLGGALTVSSQRLVRPAAPSSITATAV
KRPPVTRPAPRAAGGAAAKKPAGTGAAASSGAAAAAPKRIAPYDFKARFH
DLLEKHKVLKTKYEKQTEDMGELESMPQQLEETQNKLIETESSLKNTQSD
NECLQRQVKQHTAKIETITSTLGRTKEELSELQAIHEKVKTEHAALSTEV
VHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRGNIR
VFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQ
VFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPES
VGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDM
EIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERS
SRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSESPKTSTRMTETKNIN
RSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPF
QDCFQESVKSLRFAASVNSCKMTKAKRNRYLNNSVANSSTQSNNSGSFDK
ASFLDH
BO08464.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:58:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ncd-PB | 700 | CG7831-PB | 1..700 | 1..700 | 3568 | 100 | Plus |
| ncd-PA | 700 | CG7831-PA | 1..700 | 1..700 | 3568 | 100 | Plus |
| Klp68D-PB | 784 | CG7293-PB | 24..343 | 351..669 | 518 | 37.6 | Plus |
| Klp68D-PA | 784 | CG7293-PA | 24..343 | 351..669 | 518 | 37.6 | Plus |
| Klp64D-PA | 677 | CG10642-PA | 20..347 | 348..665 | 469 | 35.8 | Plus |
