Clone Sequence Records
BO08465.3prime Sequence
755 bp (754 high quality bases) assembled on 2006-01-06
> BO08465.3prime
ATGGTCTAGAAAGCTTGCTTCTCTCTCGTCCTTCTCTGCCTTGTCCGCCT
TAGCGCTTGCCCGGGTGGCCTTCTTGTCCTCGTACATCTTTATTAGCTCG
CTTTTTGTGGGCATGGGCTTAATGTAGCCGTGTTGCACCAGGTACTTAAT
GGATACGGTTGTACACCCCAAAGTAAGGGCGTAGCGCAGGGGCGTGGCCA
CTTTATAGCACAGATAGGCGATGGCGTAGTGCCCCATATCCGAGCCCTGC
ACCTTCTCAATGATGTTCTCGCTCAAGTGGATGTACTGCAGCAAAGCGGG
CACATCGACGCCACTCTTTGACAGGTAGTAGAAGCCTCCAAACCAGCCCA
CTGACGTGAGCACGTGCACCGGGATGAGCACGTACCAGTACTGTTTGTAC
ATGTGCTTGAACTTGGCGAACAAACCCATGTTTGCCGCCTCGCCAAAGAG
TTCGCTGGAGGTGGTGCTGTTGGTGGCCTTCAAATCCTTGCCGCCGGCTG
ACGAGTTGTTAATGGCGGGCGCTGGTGCAGCCGCCGCCGGGTTCGCCGAC
TTGTGGTTGAAGCGGATGTTGACGGTGGGCAGGAGCAGGTTACGGCGATT
CGCGAGAGGCCAGGAATCACTAGCCAGACTTGTTGGACTAGTCTCGGACA
TCGTCGACAGGCACCTTGAGTGGGCGCCACCGAACAGCCGCAAGGAGCAG
GCAAGCAATCGCTGGCGCGACAGAAAGACCACTGTTGCCATGTCGACTGA
TAACT
BO08465.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:24:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14613-PA | 726 | CG14613-RA | 1..723 | 741..19 | 3615 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:41:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14613-RB | 1755 | CG14613-RB | 246..968 | 741..19 | 3615 | 100 | Minus |
CG14613-RA | 1539 | CG14613-RA | 246..968 | 741..19 | 3615 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:41:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 22471349..22471776 | 314..741 | 2140 | 100 | Plus |
X | 23542271 | X | 22470830..22470979 | 19..168 | 750 | 100 | Plus |
X | 23542271 | X | 22471141..22471289 | 167..315 | 745 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 17:41:13 has no hits.
BO08465.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:47:53 Download gff for
BO08465.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14613-PA | 1..726 | 16..741 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:42:54 Download gff for
BO08465.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14613-PA | 1..726 | 16..741 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:43:42 Download gff for
BO08465.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14613-RA | 240..968 | 19..746 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:55:14 Download gff for
BO08465.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14613-RA | 240..968 | 19..746 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:55:14 Download gff for
BO08465.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 22470830..22470978 | 19..167 | 100 | <- | Plus |
X | 22471142..22471287 | 168..313 | 100 | <- | Plus |
X | 22471349..22471782 | 314..746 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:43:42 Download gff for
BO08465.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 21872666..21872814 | 19..167 | 100 | <- | Plus |
arm_X | 21872978..21873123 | 168..313 | 100 | <- | Plus |
arm_X | 21873185..21873618 | 314..746 | 99 | | Plus |
BO08465.5prime Sequence
755 bp (728 high quality bases) assembled on 2006-01-06
> BO08465.5prime
GAAGTTATCAGTCGACATGGCAACAGTGGTCTTTCTGTCGCGCCAGCGAT
TGCTTGCCTGCTCCTTGCGGCTGTTCGGTGGCGCCCACTCAAGGTGCCTG
TCGACGATGTCCGAGACTAGTCCAACAAGTCTGGCTAGTGATTCCTGGCC
TCTCGCGAATCGCCGTAACCTGCTCCTGCCCACCGTCAACATCCGCTTCA
ACCACAAGTCGGCGAACCCGGCGGCGGCTGCACCAGCGCCCGCCATTAAC
AACTCGTCAGCCGGCGGCAAGGATTTGAAGGCCACCAACAGCACCACCTC
CAGCGAACTCTTTGGCGAGGCGGCAAACATGGGTTTGTTCGCCAAGTTCA
AGCACATGTACAAACAGTACTGGTACGTGCTCATCCCGGTGCACGTGCTC
ACGTCAGTGGGCTGGTTTGGAGGCTTCTACTACCTGTCAAAGAGTGGCGT
CGATGTGCCCGCTTTGCTGCAGTACATCCACTTGAGCGAGAACATCATTG
AGAAGGTGCAGGGCTCGGATATGGGGCACTACGCCATCGCCTATCTGTGC
TATAAAGTGGCCACGCCCCTGCGCTACGCCCTTACTTTGGGGTGTACAAC
CGTATCCATTAAGTACCTGGTGCAACACGGCTACATTAAGCCCATGCCCA
CAAAAAGCGAGCTAATAAAGATGTACGAGGACAAGAAGGCCACCCGGGCA
AGCGCTAAGGCGGACAAGGCAGAGAAGGACGAGAGAGAAGCAAGCTTTCT
AGACC
BO08465.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:24:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14613-PA | 726 | CG14613-RA | 1..723 | 17..739 | 3615 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:14:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14613-RB | 1755 | CG14613-RB | 246..968 | 17..739 | 3615 | 100 | Plus |
CG14613-RA | 1539 | CG14613-RA | 246..968 | 17..739 | 3615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:14:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 22471349..22471776 | 444..17 | 2140 | 100 | Minus |
X | 23542271 | X | 22470830..22470979 | 739..590 | 750 | 100 | Minus |
X | 23542271 | X | 22471141..22471289 | 591..443 | 745 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:14:01 has no hits.
BO08465.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:47:55 Download gff for
BO08465.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14613-PA | 1..726 | 17..742 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:42:55 Download gff for
BO08465.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14613-PA | 1..726 | 17..742 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:30:22 Download gff for
BO08465.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14613-RA | 240..968 | 12..739 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:57:35 Download gff for
BO08465.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14613-RA | 240..968 | 12..739 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:57:35 Download gff for
BO08465.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 22470830..22470978 | 591..739 | 100 | <- | Minus |
X | 22471142..22471287 | 445..590 | 100 | <- | Minus |
X | 22471349..22471782 | 12..444 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:30:22 Download gff for
BO08465.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 21872978..21873123 | 445..590 | 100 | <- | Minus |
arm_X | 21872666..21872814 | 591..739 | 100 | <- | Minus |
arm_X | 21873185..21873618 | 12..444 | 99 | | Minus |
BO08465.complete Sequence
757 bp (757 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631207
> BO08465.complete
GAAGTTATCAGTCGACATGGCAACAGTGGTCTTTCTGTCGCGCCAGCGAT
TGCTTGCCTGCTCCTTGCGGCTGTTCGGTGGCGCCCACTCAAGGTGCCTG
TCGACGATGTCCGAGACTAGTCCAACAAGTCTGGCTAGTGATTCCTGGCC
TCTCGCGAATCGCCGTAACCTGCTCCTGCCCACCGTCAACATCCGCTTCA
ACCACAAGTCGGCGAACCCGGCGGCGGCTGCACCAGCGCCCGCCATTAAC
AACTCGTCAGCCGGCGGCAAGGATTTGAAGGCCACCAACAGCACCACCTC
CAGCGAACTCTTTGGCGAGGCGGCAAACATGGGTTTGTTCGCCAAGTTCA
AGCACATGTACAAACAGTACTGGTACGTGCTCATCCCGGTGCACGTGCTC
ACGTCAGTGGGCTGGTTTGGAGGCTTCTACTACCTGTCAAAGAGTGGCGT
CGATGTGCCCGCTTTGCTGCAGTACATCCACTTGAGCGAGAACATCATTG
AGAAGGTGCAGGGCTCGGATATGGGGCACTACGCCATCGCCTATCTGTGC
TATAAAGTGGCCACGCCCCTGCGCTACGCCCTTACTTTGGGGTGTACAAC
CGTATCCATTAAGTACCTGGTGCAACACGGCTACATTAAGCCCATGCCCA
CAAAAAGCGAGCTAATAAAGATGTACGAGGACAAGAAGGCCACCCGGGCA
AGCGCTAAGGCGGACAAGGCAGAGAAGGACGAGAGAGAAGCAAGCTTTCT
AGACCAT
BO08465.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:46:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14613-RB | 726 | CG14613-PB | 1..723 | 17..739 | 3615 | 100 | Plus |
CG14613-RA | 726 | CG14613-PA | 1..723 | 17..739 | 3615 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:46:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14613-RB | 1755 | CG14613-RB | 246..968 | 17..739 | 3615 | 100 | Plus |
CG14613-RA | 1539 | CG14613-RA | 246..968 | 17..739 | 3615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:46:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 22471349..22471776 | 444..17 | 2140 | 100 | Minus |
X | 23542271 | X | 22470830..22470979 | 739..590 | 750 | 100 | Minus |
X | 23542271 | X | 22471141..22471289 | 591..443 | 745 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:46:43 has no hits.
BO08465.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:12:03 Download gff for
BO08465.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14613-RA | 1..726 | 17..742 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:04:35 Download gff for
BO08465.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14613-RA | 194..922 | 12..739 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:13 Download gff for
BO08465.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14613-RA | 246..968 | 17..741 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:12:03 Download gff for
BO08465.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14613-RA | 194..922 | 12..739 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:52:36 Download gff for
BO08465.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14613-RA | 246..968 | 17..741 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:52:36 Download gff for
BO08465.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 22471349..22471776 | 17..444 | 100 | | Minus |
X | 22470827..22470978 | 591..741 | 98 | <- | Minus |
X | 22471142..22471287 | 445..590 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:13 Download gff for
BO08465.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 21872978..21873123 | 445..590 | 100 | <- | Minus |
arm_X | 21872663..21872814 | 591..741 | 98 | <- | Minus |
arm_X | 21873185..21873612 | 17..444 | 100 | | Minus |
BO08465.pep Sequence
Translation from 16 to 757
> BO08465.pep
MATVVFLSRQRLLACSLRLFGGAHSRCLSTMSETSPTSLASDSWPLANRR
NLLLPTVNIRFNHKSANPAAAAPAPAINNSSAGGKDLKATNSTTSSELFG
EAANMGLFAKFKHMYKQYWYVLIPVHVLTSVGWFGGFYYLSKSGVDVPAL
LQYIHLSENIIEKVQGSDMGHYAIAYLCYKVATPLRYALTLGCTTVSIKY
LVQHGYIKPMPTKSELIKMYEDKKATRASAKADKAEKDEREASFLDH
BO08465.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:13:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14613-PB | 241 | CG14613-PB | 1..241 | 1..241 | 1248 | 100 | Plus |
CG14613-PA | 241 | CG14613-PA | 1..241 | 1..241 | 1248 | 100 | Plus |
CG15403-PA | 200 | CG15403-PA | 78..200 | 91..212 | 161 | 31.2 | Plus |