Clone Sequence Records
BO08467.3prime Sequence
939 bp (862 high quality bases) assembled on 2006-01-06
> BO08467.3prime
ATGGTCTAGAAAGCTTGCGGACTCGAACTGGCCCGTCTCCAGCCCCGCCC
CCTGATCCGCCTCCATGGTTGTTGTGCCCGTGGGTGGAGCATAGTAGACC
GTTGGTCCTGTAGCCACTATCTTTCCCTCTCGCGGAAAACTTCTCGTCTC
CAGATCGGTGCGTGCCAGGGCATCTTTAAGGTCCACATCTGCCGGTATGG
AGATCACCTTGGCCCCGGGACCGGCGATGGTGAGACTCCGTGGATGGGTG
AGAGCATAGCCACCGGGACCAACAATCGCCGTTCCTCCGCTGCCCGCCGT
GGCCACGCCCCCGGGTCCTGCGATAGCGATGCCGCCCCTGCGAACCTTTA
GCCGCTGAATGATGATTCCTCCTTCGCGCAATGCCTGCTTTTGGGTGCTT
TCCTGAGCGGTGGCCACCTGGCTCACAGTGTGCATCAGGTGATGGCCCTT
GTGAGCAAACAAGTGCTTCTCTGAGGAGGCACTGTTGTCCAGTTCCGCGG
CTGTGTTCTCAATGGTATCCACATCATCGGCCATCCCATCGCCGGCGCCC
TCGTTTTCATCCTCCCATTTATAATCCATCGAATCGATTGAGTGATTCTT
CACAGGAACATTGCCAACAACCACAGGACCTTCTCCAGCTGTGGCCGCCA
TTGGAGGTCGGAAGGGGAGCTTGAAAATGTTTTGAAAGGCATTCTTGATG
GCAGTCGAGGTCTGATTCTGCATCTCAGCTATATTCATTCCGGGCATGCG
GAATGGACTTAAGCGATTCCGATTGGGCAGCAAGCCACCAGATGGTGGTA
AAGTAGAACTCAACAGGACAGGCGCAGATGTAGCCTTGATATTAAGGGAT
GTGGATCCCTGGTAGATTTGCTGTTCAGCATCCTTTCCACTCAAGCGAAC
GGGTTTCGCTGTGGAACAACCTTCTTTCTGTTCAAAGAA
BO08467.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:24:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11905-PA | 1824 | CG11905-RA | 923..1821 | 917..19 | 4495 | 100 | Minus |
| CG11905-PG | 1824 | CG11905-RG | 923..1821 | 917..19 | 4495 | 100 | Minus |
| CG11905-PD | 1824 | CG11905-RD | 923..1821 | 917..19 | 4495 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:18:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11905-RD | 2251 | CG11905-RD | 1228..2149 | 939..19 | 4585 | 99.9 | Minus |
| CG11905-RG | 2069 | CG11905-RG | 1046..1967 | 939..19 | 4585 | 99.9 | Minus |
| CG11905-RA | 2192 | CG11905-RA | 1169..2090 | 939..19 | 4585 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 11:18:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16931274..16932195 | 19..939 | 4560 | 99.9 | Plus |
Blast to na_te.dros performed 2015-02-06 11:18:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 3248..3285 | 884..847 | 109 | 76.3 | Minus |
BO08467.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:47:57 Download gff for
BO08467.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11905-PA | 902..1824 | 15..937 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:42:59 Download gff for
BO08467.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11905-PD | 902..1824 | 15..937 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:34:43 Download gff for
BO08467.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11905-RG | 1046..1970 | 15..939 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:44:07 Download gff for
BO08467.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11905-RA | 1169..2093 | 15..939 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:44:07 Download gff for
BO08467.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16931271..16932195 | 15..939 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:34:43 Download gff for
BO08467.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16924371..16925295 | 15..939 | 99 | | Plus |
BO08467.5prime Sequence
920 bp (735 high quality bases) assembled on 2006-01-06
> BO08467.5prime
GAAGTTATCAGTCGACATGCGCTTTCTTGTTCTCTCAACACTGCTTCTGG
CCTCTTTGGCACTTGGCCAGGCTCAACAGCACGGTGGACTGGCCGTCGAA
ATTCACAAGCAGCGGCTGGTCAAATTTCCCGAGGACTTTGAGCCCAATGC
GGCCACTCCGTCCTCGGAAAAGGCGGACGAGGCCAAGCGCATCCTCGAGC
AGATAGCCAAGGTTAACGAGGCCTTTGGCTACGTGAAGAAGCAGCCGGAG
CAGCCCAAGCTGCCACCGATCCTTGATTCCAGTCAATACCTGTTCCCCAA
GCCCGCCCATCAGCCATTTCACGCCCATCAGCACCACTTCTCGGGAAGTA
ATGGTCAGACCTTGTTAGAACCCTCAATTAGGGCGGTGAAACTCACAAGA
AATGTGGCGGGCAGTTACAATGTGCCTCCCAGGTTGCGCCAGGCAATTGA
GAGCACCTCCAAGGAGGAGAAGAAAGCGCAACTCTACTTCCGACCCAAAC
AGGTGGAGGTACCGAAGCCGAGTTCCGAACAAGAAGCACAGCAGCTGCCC
GCCCACTTTGTGGTGCCCGTGCACCTGTACAAACTCAATAAAGAGGAGTA
TCTCAAGGAGCACGCCTCGCAGGAATACAAGATAAAGGGATACAAAATCA
TTGGCGATGTGGACAGCTTCTATGGCAAGGCGAATGCTGGAAGAAAACAG
GGCAAGACGACGCCCAAGTATCACCTGTTCTTCCTGCCACGAGAACTGGC
TCTCAATGAAGATGGCACCCCAAAAAGGGGTAATTCCACCACCATTGGTA
CGACCACCATCAAGGCTCCAGTGCCTGTGAACTTCAAGGAATATCGTTTG
GACTCCCGCGAGAAGCCCGTGCATAAGCCACAGAAGATTCAGTCCACTTC
GTCACCGGAATTAAATTCTT
BO08467.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:25:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11905-PA | 1824 | CG11905-RA | 1..904 | 17..920 | 4345 | 99.2 | Plus |
| CG11905-PG | 1824 | CG11905-RG | 1..904 | 17..920 | 4345 | 99.2 | Plus |
| CG11905-PD | 1824 | CG11905-RD | 1..904 | 17..920 | 4345 | 99.2 | Plus |
| CG11905-PB | 1212 | CG11905-RB | 1..84 | 17..100 | 420 | 100 | Plus |
| CG11905-PF | 1212 | CG11905-RF | 1..84 | 17..100 | 420 | 100 | Plus |
| CG11905-PC | 948 | CG11905-RC | 1..83 | 17..99 | 415 | 100 | Plus |
| CG11905-PE | 948 | CG11905-RE | 1..83 | 17..99 | 415 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 10:20:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11905-RD | 2251 | CG11905-RD | 329..1232 | 17..920 | 4415 | 99.2 | Plus |
| CG11905-RG | 2069 | CG11905-RG | 147..1050 | 17..920 | 4415 | 99.2 | Plus |
| CG11905-RA | 2192 | CG11905-RA | 270..1173 | 17..920 | 4415 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 10:20:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16932191..16933011 | 920..100 | 4000 | 99.1 | Minus |
| 3L | 28110227 | 3L | 16933293..16933360 | 99..32 | 340 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 10:20:29 has no hits.
BO08467.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:47:59 Download gff for
BO08467.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11905-PA | 1..904 | 17..920 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:43:00 Download gff for
BO08467.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11905-PA | 1..904 | 17..920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:28:20 Download gff for
BO08467.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11905-RA | 264..1173 | 11..920 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:38:24 Download gff for
BO08467.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11905-RA | 264..1173 | 11..920 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:38:24 Download gff for
BO08467.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16932191..16933011 | 100..920 | 99 | <- | Minus |
| 3L | 16933293..16933360 | 32..99 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:28:20 Download gff for
BO08467.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16926393..16926460 | 32..99 | 100 | <- | Minus |
| arm_3L | 16925291..16926111 | 100..920 | 99 | <- | Minus |
BO08467.complete Sequence
1855 bp assembled on 2008-11-10
GenBank Submission: KX797732
> BO08467.complete
GAAGTTATCAGTCGACATGCGCTTTCTTGTTCTCTCAACACTGCTTCTGG
CCTCTTTGGCACTTGGCCAGGCTCAACAGCACGGTGGACTGGCCGTCGAA
ATTCAGAAGCAGCGGCTGGTCAAATTTCCCGAGGACTTTGAGCCCAATGC
GGCCACTCCGTCCTCGGAAAAGGCGGACGAGGCCAAGCGCATCCTCGAGC
AGATAGCCAAGGTTAACGAGGCCTTTGGCTACGTGAAGAAGCAGCCGGAG
CAGCCCAAGCTGCCACCGATCCTTGATTCCAGTCAATACCTGTTCCCCAA
GCCCGCCCATCAGCCATTTCACGCCCATCAGCACCACTTCTCGGGAAGTA
ATGGTCAGACCTTGTTAGAACCCTCAATTAGGGCGGTGAAACTCACAAGA
AATGTGGCGGGCAGTTACAATGTGCCTCCCAGGTTGCGCCAGGCAATTGA
GAGCACCTCCAAGGAGGAGAAGAAAGCGCAACTCTACTTCCGACCCAAAC
AGGTGGAGGTACCGAAGCCGAGTTCCGAACAAGAAGCACAGCAGCTGCCC
GCCCACTTTGTGGTGCCCGTGCACCTGTACAAACTCAATAAGGAGGAGTA
TCTCAAGGAGCACGCCTCGCAGGAATACAAGATAAAGGGATACAAAATCA
TTGGCGATGTGGACAGCTTCTATGGCAAGGCGAAGGCTGGAAGAAAACAG
GGCAAGACGACGCCCAAGTATCACCTGTTCTTCCTGCCCCGAGAACTGGC
TCTCAATGAAGATGGCACCCCAAAAAGGGGTAATTCCACCACCATTGGTA
CGACCACCACAAAGGCTCCAGTGCCTGTGAACTTCAAGGAATATCGTTTG
GACTCCCGCGAGAAGCCCGTGCATAAGCCACAGAAGATTCAGCCCACTTC
GTCACCGGAATTAAATTCTTTGAACAGAAAGAAGGTTGGTTCCACAGCGA
AACCCGTTCGCTTGAGTGGAAAGGATGCTGAACAGCAAATCTACCAGGGA
TCCACATCCCTTAATATCAAGGCTACATCTGCGCCTGTCCTGTTGAGTTC
TACTTTACCACCATCTGGTGGCTTGCTGCCCAATCGGAATCGCTTAAGTC
CATTCCGCATGCCCGGAATGAATATAGCTGAGATGCAGAATCAGACCTCG
ACTGCCATCAAGAATGCCTTTCAAAACATTTTCAAGCTCCCCTTCCGACC
TCCAATGGCGGCCACAGCTGGAGAAGGTCCTGTGGTTGTTGGCAATGTTC
CTGTGAAGAATCACTCAATCGATTCGATGGATTATAAATGGGAGGATGAA
AACGAGGGCGCCGGCGATGGGATGGCCGATGATGTGGATACCATTGAGAA
CACAGCCGCGGAACTGGACAACAGTGCCTCCTCAGAGAAGCACTTGTTTG
CTCACAAGGGCCATCACCTGATGCACACTGTGAGCCAGGTGGCCACCGCT
CAGGAAAGCACCCAAAAGCAGGCATTGCGCGAAGGAGGAATCATCATTCA
GCGGCTAAAGGTTCGCAGGGGCGGCATCGCTATCGCAGGACCCGGGGGCG
TGGCCACGGCGGGCAGCGGAGGAACGGCGATTGTTGGTCCCGGTGGCTAT
GCTCTCACCCATCCACGGAGTCTCACCATCGCCGGTCCCGGGGCCAAGGT
GATCTCCATACCGGCAGATGTGGACCTTAAAGATGCCCTGGCACGCACCG
ATCTGGAGACGAGAAGTTTTCCGCGAGAGGGAAAGATAGTGGCTACAGGA
CCAACGGTCTACTATGCTCCACCCACGGGCACAACAACCATGGAGGCGGA
TCAGGGGGCGGGGCTGGAGACGGGCCAGTTCGAGTCCGCAAGCTTTCTAG
ACCAT
BO08467.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:59:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11905-RD | 1824 | CG11905-PD | 1..1821 | 17..1837 | 9105 | 100 | Plus |
| CG11905-RG | 1824 | CG11905-PG | 1..1821 | 17..1837 | 9105 | 100 | Plus |
| CG11905-RA | 1824 | CG11905-PA | 1..1821 | 17..1837 | 9105 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:59:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11905-RD | 2251 | CG11905-RD | 329..2149 | 17..1837 | 9105 | 100 | Plus |
| CG11905-RG | 2069 | CG11905-RG | 147..1967 | 17..1837 | 9105 | 100 | Plus |
| CG11905-RA | 2192 | CG11905-RA | 270..2090 | 17..1837 | 9105 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:59:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16931274..16933011 | 1837..100 | 8690 | 100 | Minus |
| 3L | 28110227 | 3L | 16933293..16933360 | 99..32 | 340 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:59:12 has no hits.
BO08467.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:50:19 Download gff for
BO08467.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11905-RD | 300..2129 | 11..1841 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:09 Download gff for
BO08467.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11905-RA | 270..2090 | 17..1839 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:59:40 Download gff for
BO08467.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11905-RD | 306..2126 | 17..1839 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:07:33 Download gff for
BO08467.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11905-RA | 270..2090 | 17..1839 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:07:33 Download gff for
BO08467.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16931272..16933011 | 100..1839 | 99 | <- | Minus |
| 3L | 16933293..16933360 | 32..99 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:09 Download gff for
BO08467.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16924372..16926111 | 100..1839 | 99 | <- | Minus |
| arm_3L | 16926393..16926460 | 32..99 | 100 | <- | Minus |
BO08467.pep Sequence
Translation from 16 to 1855
> BO08467.pep
MRFLVLSTLLLASLALGQAQQHGGLAVEIQKQRLVKFPEDFEPNAATPSS
EKADEAKRILEQIAKVNEAFGYVKKQPEQPKLPPILDSSQYLFPKPAHQP
FHAHQHHFSGSNGQTLLEPSIRAVKLTRNVAGSYNVPPRLRQAIESTSKE
EKKAQLYFRPKQVEVPKPSSEQEAQQLPAHFVVPVHLYKLNKEEYLKEHA
SQEYKIKGYKIIGDVDSFYGKAKAGRKQGKTTPKYHLFFLPRELALNEDG
TPKRGNSTTIGTTTTKAPVPVNFKEYRLDSREKPVHKPQKIQPTSSPELN
SLNRKKVGSTAKPVRLSGKDAEQQIYQGSTSLNIKATSAPVLLSSTLPPS
GGLLPNRNRLSPFRMPGMNIAEMQNQTSTAIKNAFQNIFKLPFRPPMAAT
AGEGPVVVGNVPVKNHSIDSMDYKWEDENEGAGDGMADDVDTIENTAAEL
DNSASSEKHLFAHKGHHLMHTVSQVATAQESTQKQALREGGIIIQRLKVR
RGGIAIAGPGGVATAGSGGTAIVGPGGYALTHPRSLTIAGPGAKVISIPA
DVDLKDALARTDLETRSFPREGKIVATGPTVYYAPPTGTTTMEADQGAGL
ETGQFESASFLDH
BO08467.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:16:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11905-PD | 607 | CG11905-PD | 1..607 | 1..607 | 3124 | 100 | Plus |
| CG11905-PG | 607 | CG11905-PG | 1..607 | 1..607 | 3124 | 100 | Plus |
| CG11905-PA | 607 | CG11905-PA | 1..607 | 1..607 | 3124 | 100 | Plus |
