Clone Sequence Records
BO08473.3prime Sequence
884 bp (796 high quality bases) assembled on 2006-01-06
> BO08473.3prime
ATGGTCTAGAAAGCTTGCCGGACACTTCCGCTCGACTTGGCTCTTGCCGG
CCTCTTCGTACTCCTGCGACGATATCCACATCTGTTGGAAAGTACCTATG
CTGGCTAGAATAGAGCCGCCAATCCAGGCTCCAAATCTTCGCTCCACGCT
GCCATTGGCAGAAATCATTTTTAGGCGCGTATTTGAGGGGGCACGCAGCT
GGAGATCGCGATTTAGGCGCTCCGGAAAGCCTTGCAGAAGGGTATTGCCA
CCAGTAACGACAACTGAGCCGAAAAGTGACAGCCGCACATCCGCATCACA
CATGCCCACACTGGTGGACGCCAATTGGCCAGCTCCCAGCATTGCATTGT
CAAAGAGACTCTCGGCTATCTTGAACCGCTCAGAGCCAAAGTCCTGATGA
TAACCATTAGGAAACTCATAGTGTACCGTCGGGATTTGAGCAGCAACCCG
TTCGTCGAACGGATTTTCTAGGACCTGCAGCACATTCATCTGAAAGTCTT
GCATCATGAGCTGCAACATGTAGTTTTGCCACGACTGAGTTAGGTTCTCT
GGCAGTTTGCGCAGCGTGAAGCGTCCGTTGTCGCGCTCCTTAACAACGTC
TTTGGAGGCAATCTTGTATACCGGCGACAGATCAATGCCGTGCTTCTCCA
GATGCTGGCGGCACTGTCGTGAAAGGAAGTCTCCACCCAGGGGTGACTTA
ACCACCGCCTGGGATAGGACATAGCCCTCATGGACGGGAACGGCCGAGGT
GTGGGTGGCTCCACTATCGACAACCAAAGCGGTGGCCCGCCCGCTGGAGA
AGGCAGCCAGAACGGCGTTCTTTACCAGAAAGAAGGCTGGAACATTGTAC
TTCTCGAAACATAGCTCGGTTAGCTTCTCGCGGT
BO08473.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:25:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6546-PA | 1278 | Bap55-RA | 436..1275 | 858..19 | 4200 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:32:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bap55-RA | 1473 | CG6546-RA | 533..1398 | 884..19 | 4285 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:32:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17429718..17430352 | 250..884 | 3115 | 99.4 | Plus |
| 2R | 25286936 | 2R | 17429428..17429661 | 19..252 | 1170 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:32:33 has no hits.
BO08473.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:48:09 Download gff for
BO08473.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bap55-PA | 410..1278 | 15..884 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:43:15 Download gff for
BO08473.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6546-PA | 410..1278 | 15..884 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:33:48 Download gff for
BO08473.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bap55-RA | 533..1402 | 14..884 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:04:02 Download gff for
BO08473.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bap55-RA | 533..1402 | 14..884 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:04:02 Download gff for
BO08473.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17429424..17429660 | 14..251 | 99 | <- | Plus |
| 2R | 17429720..17430352 | 252..884 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:33:48 Download gff for
BO08473.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13316929..13317165 | 14..251 | 99 | <- | Plus |
| arm_2R | 13317225..13317857 | 252..884 | 99 | | Plus |
BO08473.5prime Sequence
945 bp (831 high quality bases) assembled on 2006-01-06
> BO08473.5prime
GAAGTTATCAGTCGACATGAGTGGCGGCACCATGCTATATGGCGGCGACG
AGATCGGCGCCCTGGTCTTCGATCCTGGACATCATTCCTTGCGAGTGGGC
TACGCACAGGAGGATTCGCCCAAGGCGGAGATACCCTCGGTTGTGGGGAT
TGGAGCAGCTCCAGAGACCAATCTCGATCCGGAAACTAAAACAGACAACA
ATGCCACGCCAAATAATGCTGACCAGCGCAAGTTCTATGTGGACACCAAC
TACGTGACCGTTCCCCGTTCCAATATGGAGGTGCAGACCTATATGAAAGA
CGGCATGATTGACAACTGGGACCTGTTTGAGAAGGTTATTGATTATGCCT
ACGCCAATGTCATTCAGTCGGAGCCGGAATACCATCCCGTGCTCTTTTCC
GAGGCATCGTGGAATGTCCGCAACAACCGCGAGAAGCTAACCGAGCTTAT
GTTCGAGAAGTACAATGTTCCAGCCTTCTTTCTGGTAAAGAACGCCGTTC
TGGCTGCCTTCTCCAGCGGGCGGGCCACCGCTTTGGTTGTCGATAGTGGA
GCCACCCACACCTCGGCCGTTCCCGTCCATGAGGGCTATGTCCTATCCCA
GGCGGTGGTTAAGTCACCCCTGGGTGGAGACTTCCTTTCACGACAGTGCC
GCCAGCATCTGGAGAAGCACGGCATTGATCTGTCGCCGGTATACAAGATT
GCCTCCAAAGACGTTGTTAAGGAGCGCGACAACGGACGCTTCACGCTGCG
CAAACTGCCAGAGAACCTAACTCAGTCGTGGCAAAACTACATGTTGCAGC
TCATGATGCAAGACTTTCAGATGAATGTGCTGCAGGTCCTAGAAAATCCG
TTCGACGAACGGGTTGCTGCTCAAATCCCGACGGTACACTATGAGTTTCC
TAATGGTTATCATCAGGACTTTGGCTCTGAGCGGTTCAAGATAGC
BO08473.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:25:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6546-PA | 1278 | Bap55-RA | 1..929 | 17..945 | 4645 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:56:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bap55-RA | 1473 | CG6546-RA | 124..1052 | 17..945 | 4645 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:56:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17429833..17430562 | 945..216 | 3650 | 100 | Minus |
| 2R | 25286936 | 2R | 17430642..17430840 | 215..17 | 995 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 12:56:36 has no hits.
BO08473.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:48:10 Download gff for
BO08473.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bap55-PA | 1..929 | 17..945 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:43:17 Download gff for
BO08473.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6546-PA | 1..929 | 17..945 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:27:54 Download gff for
BO08473.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bap55-RA | 124..1052 | 17..945 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:04:56 Download gff for
BO08473.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bap55-RA | 124..1052 | 17..945 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:04:56 Download gff for
BO08473.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17429833..17430562 | 216..945 | 100 | <- | Minus |
| 2R | 17430642..17430840 | 17..215 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:27:54 Download gff for
BO08473.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13317338..13318067 | 216..945 | 100 | <- | Minus |
| arm_2R | 13318147..13318345 | 17..215 | 100 | | Minus |
BO08473.complete Sequence
1309 bp (1309 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631210
> BO08473.complete
GAAGTTATCAGTCGACATGAGTGGCGGCACCATGCTATATGGCGGCGACG
AGATCGGCGCCCTGGTCTTCGATCCTGGACATCATTCCTTGCGAGTGGGC
TACGCACAGGAGGATTCGCCCAAGGCGGAGATACCCTCGGTTGTGGGGAT
TGGAGCAGCTCCAGAGACCAATCTCGATCCGGAAACTAAAACAGACAACA
ATGCCACGCCAAATAATGCTGACCAGCGCAAGTTCTATGTGGACACCAAC
TACGTGACCGTTCCCCGTTCCAATATGGAGGTGCAGACCTATATGAAAGA
CGGCATGATTGACAACTGGGACCTGTTTGAGAAGGTTATTGATTATGCCT
ACGCCAATGTCATTCAGTCGGAGCCGGAATACCATCCCGTGCTCTTTTCC
GAGGCATCGTGGAATGTCCGCAACAACCGCGAGAAGCTAACCGAGCTTAT
GTTCGAGAAGTACAATGTTCCAGCCTTCTTTCTGGTAAAGAACGCCGTTC
TGGCTGCCTTCTCCAGCGGGCGGGCCACCGCTTTGGTTGTCGATAGTGGA
GCCACCCACACCTCGGCCGTTCCCGTCCATGAGGGCTATGTCCTATCCCA
GGCGGTGGTTAAGTCACCCCTGGGTGGAGACTTCCTTTCACGACAGTGCC
GCCAGCATCTGGAGAAGCACGGCATTGATCTGTCGCCGGTATACAAGATT
GCCTCCAAAGACGTTGTTAAGGAGCGCGACAACGGACGCTTCACGCTGCG
CAAACTGCCAGAGAACCTAACTCAGTCGTGGCAAAACTACATGTTGCAGC
TCATGATGCAAGACTTTCAGATGAATGTGCTGCAGGTCCTAGAAAATCCG
TTCGACGAACGGGTTGCTGCTCAAATCCCGACGGTACACTATGAGTTTCC
TAATGGTTATCATCAGGACTTTGGCTCTGAGCGGTTCAAGATAGCCGAGA
GTCTCTTTGACAATGCAATGCTGGGAGCTGGCCAATTGGCGTCCACCAGT
GTGGGCATGTGTGATGCGGATGTGCGGCTGTCACTTTTCGGCTCAGTTGT
CGTTACTGGTGGCAATACCCTTCTGCAAGGCTTTCCGGAGCGCCTAAATC
GCGATCTCCAGCTGCGTGCCCCCTCAAATACGCGCCTAAAAATGATTTCT
GCCAATGGCAGCGTGGAGCGAAGATTTGGAGCCTGGATTGGCGGCTCTAT
TCTAGCCAGCATAGGTACTTTCCAACAGATGTGGATATCGTCGCAGGAGT
ACGAAGAGGCCGGCAAGAGCCAAGTCGAGCGGAAGTGTCCGGCAAGCTTT
CTAGACCAT
BO08473.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:44:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bap55-RA | 1278 | CG6546-PA | 1..1275 | 17..1291 | 6375 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:44:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bap55-RA | 1473 | CG6546-RA | 124..1398 | 17..1291 | 6375 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:44:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17429718..17430562 | 1060..216 | 4225 | 100 | Minus |
| 2R | 25286936 | 2R | 17429428..17429661 | 1291..1058 | 1170 | 100 | Minus |
| 2R | 25286936 | 2R | 17430642..17430840 | 215..17 | 995 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:44:46 has no hits.
BO08473.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:12:05 Download gff for
BO08473.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bap55-RA | 1..1278 | 17..1295 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:32:58 Download gff for
BO08473.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bap55-RA | 96..1374 | 17..1296 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:15 Download gff for
BO08473.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bap55-RA | 124..1398 | 17..1293 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:12:06 Download gff for
BO08473.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bap55-RA | 96..1374 | 17..1296 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:25:53 Download gff for
BO08473.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bap55-RA | 124..1398 | 17..1293 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:25:53 Download gff for
BO08473.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17429426..17429660 | 1059..1293 | 99 | <- | Minus |
| 2R | 17429720..17430562 | 216..1058 | 100 | <- | Minus |
| 2R | 17430642..17430840 | 17..215 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:15 Download gff for
BO08473.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13316931..13317165 | 1059..1293 | 99 | <- | Minus |
| arm_2R | 13318147..13318345 | 17..215 | 100 | | Minus |
| arm_2R | 13317225..13318067 | 216..1058 | 100 | <- | Minus |
BO08473.pep Sequence
Translation from 16 to 1309
> BO08473.pep
MSGGTMLYGGDEIGALVFDPGHHSLRVGYAQEDSPKAEIPSVVGIGAAPE
TNLDPETKTDNNATPNNADQRKFYVDTNYVTVPRSNMEVQTYMKDGMIDN
WDLFEKVIDYAYANVIQSEPEYHPVLFSEASWNVRNNREKLTELMFEKYN
VPAFFLVKNAVLAAFSSGRATALVVDSGATHTSAVPVHEGYVLSQAVVKS
PLGGDFLSRQCRQHLEKHGIDLSPVYKIASKDVVKERDNGRFTLRKLPEN
LTQSWQNYMLQLMMQDFQMNVLQVLENPFDERVAAQIPTVHYEFPNGYHQ
DFGSERFKIAESLFDNAMLGAGQLASTSVGMCDADVRLSLFGSVVVTGGN
TLLQGFPERLNRDLQLRAPSNTRLKMISANGSVERRFGAWIGGSILASIG
TFQQMWISSQEYEEAGKSQVERKCPASFLDH
BO08473.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:55:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bap55-PA | 425 | CG6546-PA | 1..425 | 1..425 | 2214 | 100 | Plus |
| Act87E-PC | 376 | CG18290-PC | 4..375 | 11..424 | 581 | 32.9 | Plus |
| Act87E-PB | 376 | CG18290-PB | 4..375 | 11..424 | 581 | 32.9 | Plus |
| Act87E-PA | 376 | CG18290-PA | 4..375 | 11..424 | 581 | 32.9 | Plus |
| Act42A-PA | 376 | CG12051-PA | 4..375 | 11..424 | 577 | 32.2 | Plus |
