Clone BO08474 Report

Search the DGRC for BO08474

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:84
Well:74
Vector:pDNR-Dual
Associated Gene/Transcriptrumi-RA
Protein status:BO08474.pep: validated full length
Sequenced Size:1267

Clone Sequence Records

BO08474.3prime Sequence

922 bp (837 high quality bases) assembled on 2006-01-06

> BO08474.3prime
ATGGTCTAGAAAGCTTGCCAGCTCATCCTTTTTAGGCCCTATGTAAATAA
GTTGATCCTCCGGCTTAACCTCGTATTGCAGCAGCTTCACATATCGCTTG
AGCAGCTTGCGCCAATAGCACTTGATGTCCTTCATGCGCAAATGCTCCCA
GATGAAGTCGTATCCACGCTGAGCGATCTCCTGGGCCAGCGCATCGTTTT
TCTTGAAAAAGGACAAGATGTGCTCGTACTCCTGCTGACTGGGGTAGCTC
TTGAGCGGCACATAGTGCACCCAGGGCTTTAGTTGGTCGTAGAAGAACTC
CTGCCACTCGTCGCCCACATGGAAGACCAGCGACTTGCAGAGGAACAAGT
GCTTCAGACGAAAACTGGCGGCCACACCGCGGAAATTGAACAAGTACTTG
TACTTGCAGTGGTCCTCGAAGGACACCTCATCAGCAGCCGGTGCGTCCAG
TGTATCCTTAGGCGACTTCCAGCCCTGATTTTTGGTGTATTGAGCCTCGA
CTAGCTCCGGATTGCGGCGCGAGAGCAGAATAAGAGAATCACGTTCGTCC
GAGGTGCGTGAACCGCGAAAGAAGCCCAGACTGCGTTTCTGTGACCAGGG
TATAGCTGCCGCTCGCTTCTCCAGCTTCTCGCGCATCTGATCCCAGCGTC
CAATGCCACGAGGATGGAGCTTGGTGGCCGGTCCTCCGGCCCAGAATGTC
CACGCTGGATACATGATGTCGCGGTACTCCTTTGTCTTGGAGAAGGAGAA
GACGGGACCACCAGCCGCGTTACCCCACGCCGCATTCAGCTGCGGATAGT
CCCTGGTATTGATGATCAAGTCCATGTCGGGCAGCGTAGCCACCAGCGGC
AGCAGGAAGTGTTCATGCCCTCACAGCGGGCTGGGAACATGCAGTTGGCA
TCCCGGTACAGGCGATGTCCGT

BO08474.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:25:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG31152-PA 1236 CG31152-RA 387..1233 865..19 4235 100 Minus
CG31152-PA 1236 CG31152-RA 329..386 922..865 290 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 21:43:15
Subject Length Description Subject Range Query Range Score Percent Strand
rumi-RB 1530 CG31152-RB 398..1302 922..19 4500 99.9 Minus
rumi-RA 1534 CG31152-RA 402..1306 922..19 4500 99.9 Minus
CG31139-RC 1308 CG31139-RC 857..990 399..266 325 83.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 21:43:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22749242..22750146 19..922 4475 99.9 Plus
3R 32079331 3R 22748008..22748141 266..399 325 82.8 Plus
Blast to na_te.dros performed on 2015-02-11 21:43:14 has no hits.

BO08474.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:48:11 Download gff for BO08474.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31152-PA 329..1236 18..922 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:43:18 Download gff for BO08474.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31152-PA 329..1236 18..922 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 20:27:25 Download gff for BO08474.3prime
Subject Subject Range Query Range Percent Splice Strand
rumi-RA 402..1310 13..922 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:39:18 Download gff for BO08474.3prime
Subject Subject Range Query Range Percent Splice Strand
rumi-RA 402..1310 13..922 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:39:18 Download gff for BO08474.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 22749238..22750146 13..922 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 20:27:25 Download gff for BO08474.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18574960..18575868 13..922 99   Plus

BO08474.5prime Sequence

932 bp (782 high quality bases) assembled on 2006-01-06

> BO08474.5prime
GAAGTTATCAGTCGACATGCTAATAAATCATTTAATAGTCGTATTATTAA
TTAGTTTGGTAGGAACAGGAGGTGCAGAAGATGACGGACTTTGCAGTGCC
GATCAAAAATCCTGTGCACAAAGTGAACCCGACCAAATAAACGAGGATGA
ATTTAGCTTCAAGATACGTCGCCAGATCGAAAAAGCCAATGCCGACTACA
AGCCGTGCAGCAGTGATCCCCAGGACAGCGACTGCTCCTGCCACGCAAAT
GTTCTGAAACGGGATCTCGCGCCCTACAAGTCAACAGGTGTCACCCGGCA
GATGATCGAGAGTTCAGCGCGTTACGGCACCAAATACAAGATCTACGGAC
ATCGCCTGTACCGGGATGCCAACTGCATGTTCCCAGCCCGCTGTGAGGGC
ATTGAACACTTCCTGCTGCCGCTGGTGGCTACGCTGCCCGACATGGACTT
GATCATCAATACCAGGGACTATCCGCAGCTGAATGCGGCGTGGGGTAACG
CGGCTGGTGGTCCCGTCTTCTCCTTCTCCAAGACAAAGGAGTACCGCGAC
ATCATGTATCCAGCGTGGACATTCTGGGCCGGAGGACCGGCCACCAAGCT
CCATCCTCGTGGCATTGGACGCTGGGATCAGATGCGCGAGAAGCTGGAGA
AGCGAGCGGCAGCTATACCCTGGTCACAGAAACGCAGTCTGGGCTTCTTT
CGCGGTTCACGCACCTCGGACGAACGTGATTCTCTTATTCTGCTCTCGCG
CCGCAATCCGGAGCTAGTCGAGGCTCAATACACCAAAAATCAGGGCTGGA
AGTCGCCTTAAGATACACTGGACGCACCGGCTGCTGATGAGGTGTCCTTC
GAGGACCACTGCAAGTACAAGTACTTGTTCAATTTCCGCGGTGTGGCCCG
CCAGTTTCGTCTGAAGCACTTGTCCTTCTGCA

BO08474.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:25:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG31152-PA 1236 CG31152-RA 1..882 17..898 4360 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:05:07
Subject Length Description Subject Range Query Range Score Percent Strand
rumi-RA 1534 CG31152-RA 74..989 17..932 4475 99.3 Plus
rumi-RB 1530 CG31152-RB 74..985 17..932 4405 98.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:05:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22749559..22750338 932..153 3765 98.8 Minus
3R 32079331 3R 22750389..22750524 152..17 680 100 Minus
Blast to na_te.dros performed on 2015-02-12 12:05:04 has no hits.

BO08474.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:48:12 Download gff for BO08474.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31152-PA 1..915 17..931 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:43:19 Download gff for BO08474.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31152-PA 1..915 17..931 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:56:34 Download gff for BO08474.5prime
Subject Subject Range Query Range Percent Splice Strand
rumi-RA 67..988 9..931 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:57:25 Download gff for BO08474.5prime
Subject Subject Range Query Range Percent Splice Strand
rumi-RA 67..988 9..931 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:57:25 Download gff for BO08474.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 22749560..22750338 153..931 99 <- Minus
3R 22750389..22750531 9..152 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:56:34 Download gff for BO08474.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18575282..18576060 153..931 99 <- Minus
arm_3R 18576111..18576253 9..152 97   Minus

BO08474.complete Sequence

1267 bp (1267 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ631211

> BO08474.complete
GAAGTTATCAGTCGACATGCTAATAAATCATTTAATAGTCGTATTATTAA
TTAGTTTGGTAGGAACAGGAGGTGCAGAAGATGACGGACTTTGCAGTGCC
GATCAAAAATCCTGTGCACAAAGTGAACCCGACCAAATAAACGAGGATGA
ATTTAGCTTCAAGATACGTCGCCAGATCGAAAAAGCCAATGCCGACTACA
AGCCGTGCAGCAGTGATCCCCAGGACAGCGACTGCTCCTGCCACGCAAAT
GTTCTGAAACGGGATCTCGCGCCCTACAAGTCAACAGGTGTCACCCGGCA
GATGATCGAGAGTTCAGCGCGTTACGGCACCAAATACAAGATCTACGGAC
ATCGCCTGTACCGGGATGCCAACTGCATGTTCCCAGCCCGCTGTGAGGGC
ATTGAACACTTCCTGCTGCCGCTGGTGGCTACGCTGCCCGACATGGACTT
GATCATCAATACCAGGGACTATCCGCAGCTGAATGCGGCGTGGGGTAACG
CGGCTGGTGGTCCCGTCTTCTCCTTCTCCAAGACAAAGGAGTACCGCGAC
ATCATGTATCCAGCGTGGACATTCTGGGCCGGAGGACCGGCCACCAAGCT
CCATCCTCGTGGCATTGGACGCTGGGATCAGATGCGCGAGAAGCTGGAGA
AGCGAGCGGCAGCTATACCCTGGTCACAGAAACGCAGTCTGGGCTTCTTT
CGCGGTTCACGCACCTCGGACGAACGTGATTCTCTTATTCTGCTCTCGCG
CCGCAATCCGGAGCTAGTCGAGGCTCAATACACCAAAAATCAGGGCTGGA
AGTCGCCTAAGGATACACTGGACGCACCGGCTGCTGATGAGGTGTCCTTC
GAGGACCACTGCAAGTACAAGTACTTGTTCAATTTCCGCGGTGTGGCCGC
CAGTTTTCGTCTGAAGCACTTGTTCCTCTGCAAGTCGCTGGTCTTCCATG
TGGGCGACGAGTGGCAGGAGTTCTTCTACGACCAACTAAAGCCCTGGGTG
CACTATGTGCCGCTCAAGAGCTACCCCAGTCAGCAGGAGTACGAGCACAT
CTTGTCCTTTTTCAAGAAAAACGATGCGCTGGCCCAGGAGATCGCTCAGC
GTGGATACGACTTCATCTGGGAGCATTTGCGCATGAAGGACATCAAGTGC
TATTGGCGCAAGCTGCTCAAGCGATATGTGAAGCTGCTGCAATACGAGGT
TAAGCCGGAGGATCAACTTATTTACATAGGGCCTAAAAAGGATGAGCTGG
CAAGCTTTCTAGACCAT

BO08474.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:53:41
Subject Length Description Subject Range Query Range Score Percent Strand
rumi-RA 1236 CG31152-PA 1..1233 17..1249 6165 100 Plus
rumi-RB 951 CG31152-PB 1..948 302..1249 4740 100 Plus
CG31139-RC 939 CG31139-PC 541..674 869..1002 325 82.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:53:42
Subject Length Description Subject Range Query Range Score Percent Strand
rumi-RA 1534 CG31152-RA 74..1306 17..1249 6165 100 Plus
rumi-RB 1530 CG31152-RB 74..1302 17..1249 6070 99.7 Plus
CG31139-RC 1308 CG31139-RC 857..990 869..1002 325 82.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:53:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22749242..22750338 1249..153 5485 100 Minus
3R 32079331 3R 22750389..22750524 152..17 680 100 Minus
3R 32079331 3R 22748008..22748141 1002..869 325 82.8 Minus
Blast to na_te.dros performed on 2014-11-27 19:53:39 has no hits.

BO08474.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:12:07 Download gff for BO08474.complete
Subject Subject Range Query Range Percent Splice Strand
rumi-RA 1..1236 17..1250 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:33:01 Download gff for BO08474.complete
Subject Subject Range Query Range Percent Splice Strand
rumi-RA 31..1274 9..1255 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:04:18 Download gff for BO08474.complete
Subject Subject Range Query Range Percent Splice Strand
rumi-RA 74..1306 17..1251 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:12:07 Download gff for BO08474.complete
Subject Subject Range Query Range Percent Splice Strand
rumi-RA 31..1274 9..1255 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:10:16 Download gff for BO08474.complete
Subject Subject Range Query Range Percent Splice Strand
rumi-RA 74..1306 17..1251 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:10:16 Download gff for BO08474.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22750389..22750524 17..152 100   Minus
3R 22749238..22750338 153..1251 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:04:18 Download gff for BO08474.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18576111..18576246 17..152 100   Minus
arm_3R 18574960..18576060 153..1251 99 <- Minus

BO08474.pep Sequence

Translation from 16 to 1267

> BO08474.pep
MLINHLIVVLLISLVGTGGAEDDGLCSADQKSCAQSEPDQINEDEFSFKI
RRQIEKANADYKPCSSDPQDSDCSCHANVLKRDLAPYKSTGVTRQMIESS
ARYGTKYKIYGHRLYRDANCMFPARCEGIEHFLLPLVATLPDMDLIINTR
DYPQLNAAWGNAAGGPVFSFSKTKEYRDIMYPAWTFWAGGPATKLHPRGI
GRWDQMREKLEKRAAAIPWSQKRSLGFFRGSRTSDERDSLILLSRRNPEL
VEAQYTKNQGWKSPKDTLDAPAADEVSFEDHCKYKYLFNFRGVAASFRLK
HLFLCKSLVFHVGDEWQEFFYDQLKPWVHYVPLKSYPSQQEYEHILSFFK
KNDALAQEIAQRGYDFIWEHLRMKDIKCYWRKLLKRYVKLLQYEVKPEDQ
LIYIGPKKDELASFLDH

BO08474.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:55:12
Subject Length Description Subject Range Query Range Score Percent Strand
rumi-PA 411 CG31152-PA 1..411 1..411 2222 100 Plus
rumi-PB 316 CG31152-PB 1..316 96..411 1724 100 Plus
CG31139-PA 397 CG31139-PA 22..389 26..408 952 47.4 Plus
CG31139-PC 312 CG31139-PC 1..304 96..408 870 50.6 Plus