Clone Sequence Records
BO08474.3prime Sequence
922 bp (837 high quality bases) assembled on 2006-01-06
> BO08474.3prime
ATGGTCTAGAAAGCTTGCCAGCTCATCCTTTTTAGGCCCTATGTAAATAA
GTTGATCCTCCGGCTTAACCTCGTATTGCAGCAGCTTCACATATCGCTTG
AGCAGCTTGCGCCAATAGCACTTGATGTCCTTCATGCGCAAATGCTCCCA
GATGAAGTCGTATCCACGCTGAGCGATCTCCTGGGCCAGCGCATCGTTTT
TCTTGAAAAAGGACAAGATGTGCTCGTACTCCTGCTGACTGGGGTAGCTC
TTGAGCGGCACATAGTGCACCCAGGGCTTTAGTTGGTCGTAGAAGAACTC
CTGCCACTCGTCGCCCACATGGAAGACCAGCGACTTGCAGAGGAACAAGT
GCTTCAGACGAAAACTGGCGGCCACACCGCGGAAATTGAACAAGTACTTG
TACTTGCAGTGGTCCTCGAAGGACACCTCATCAGCAGCCGGTGCGTCCAG
TGTATCCTTAGGCGACTTCCAGCCCTGATTTTTGGTGTATTGAGCCTCGA
CTAGCTCCGGATTGCGGCGCGAGAGCAGAATAAGAGAATCACGTTCGTCC
GAGGTGCGTGAACCGCGAAAGAAGCCCAGACTGCGTTTCTGTGACCAGGG
TATAGCTGCCGCTCGCTTCTCCAGCTTCTCGCGCATCTGATCCCAGCGTC
CAATGCCACGAGGATGGAGCTTGGTGGCCGGTCCTCCGGCCCAGAATGTC
CACGCTGGATACATGATGTCGCGGTACTCCTTTGTCTTGGAGAAGGAGAA
GACGGGACCACCAGCCGCGTTACCCCACGCCGCATTCAGCTGCGGATAGT
CCCTGGTATTGATGATCAAGTCCATGTCGGGCAGCGTAGCCACCAGCGGC
AGCAGGAAGTGTTCATGCCCTCACAGCGGGCTGGGAACATGCAGTTGGCA
TCCCGGTACAGGCGATGTCCGT
BO08474.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:25:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31152-PA | 1236 | CG31152-RA | 387..1233 | 865..19 | 4235 | 100 | Minus |
CG31152-PA | 1236 | CG31152-RA | 329..386 | 922..865 | 290 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 21:43:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rumi-RB | 1530 | CG31152-RB | 398..1302 | 922..19 | 4500 | 99.9 | Minus |
rumi-RA | 1534 | CG31152-RA | 402..1306 | 922..19 | 4500 | 99.9 | Minus |
CG31139-RC | 1308 | CG31139-RC | 857..990 | 399..266 | 325 | 83.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 21:43:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22749242..22750146 | 19..922 | 4475 | 99.9 | Plus |
3R | 32079331 | 3R | 22748008..22748141 | 266..399 | 325 | 82.8 | Plus |
Blast to na_te.dros performed on 2015-02-11 21:43:14 has no hits.
BO08474.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:48:11 Download gff for
BO08474.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31152-PA | 329..1236 | 18..922 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:43:18 Download gff for
BO08474.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31152-PA | 329..1236 | 18..922 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 20:27:25 Download gff for
BO08474.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rumi-RA | 402..1310 | 13..922 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:39:18 Download gff for
BO08474.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rumi-RA | 402..1310 | 13..922 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:39:18 Download gff for
BO08474.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22749238..22750146 | 13..922 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 20:27:25 Download gff for
BO08474.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18574960..18575868 | 13..922 | 99 | | Plus |
BO08474.5prime Sequence
932 bp (782 high quality bases) assembled on 2006-01-06
> BO08474.5prime
GAAGTTATCAGTCGACATGCTAATAAATCATTTAATAGTCGTATTATTAA
TTAGTTTGGTAGGAACAGGAGGTGCAGAAGATGACGGACTTTGCAGTGCC
GATCAAAAATCCTGTGCACAAAGTGAACCCGACCAAATAAACGAGGATGA
ATTTAGCTTCAAGATACGTCGCCAGATCGAAAAAGCCAATGCCGACTACA
AGCCGTGCAGCAGTGATCCCCAGGACAGCGACTGCTCCTGCCACGCAAAT
GTTCTGAAACGGGATCTCGCGCCCTACAAGTCAACAGGTGTCACCCGGCA
GATGATCGAGAGTTCAGCGCGTTACGGCACCAAATACAAGATCTACGGAC
ATCGCCTGTACCGGGATGCCAACTGCATGTTCCCAGCCCGCTGTGAGGGC
ATTGAACACTTCCTGCTGCCGCTGGTGGCTACGCTGCCCGACATGGACTT
GATCATCAATACCAGGGACTATCCGCAGCTGAATGCGGCGTGGGGTAACG
CGGCTGGTGGTCCCGTCTTCTCCTTCTCCAAGACAAAGGAGTACCGCGAC
ATCATGTATCCAGCGTGGACATTCTGGGCCGGAGGACCGGCCACCAAGCT
CCATCCTCGTGGCATTGGACGCTGGGATCAGATGCGCGAGAAGCTGGAGA
AGCGAGCGGCAGCTATACCCTGGTCACAGAAACGCAGTCTGGGCTTCTTT
CGCGGTTCACGCACCTCGGACGAACGTGATTCTCTTATTCTGCTCTCGCG
CCGCAATCCGGAGCTAGTCGAGGCTCAATACACCAAAAATCAGGGCTGGA
AGTCGCCTTAAGATACACTGGACGCACCGGCTGCTGATGAGGTGTCCTTC
GAGGACCACTGCAAGTACAAGTACTTGTTCAATTTCCGCGGTGTGGCCCG
CCAGTTTCGTCTGAAGCACTTGTCCTTCTGCA
BO08474.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:25:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31152-PA | 1236 | CG31152-RA | 1..882 | 17..898 | 4360 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:05:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rumi-RA | 1534 | CG31152-RA | 74..989 | 17..932 | 4475 | 99.3 | Plus |
rumi-RB | 1530 | CG31152-RB | 74..985 | 17..932 | 4405 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:05:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22749559..22750338 | 932..153 | 3765 | 98.8 | Minus |
3R | 32079331 | 3R | 22750389..22750524 | 152..17 | 680 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 12:05:04 has no hits.
BO08474.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:48:12 Download gff for
BO08474.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31152-PA | 1..915 | 17..931 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:43:19 Download gff for
BO08474.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31152-PA | 1..915 | 17..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:56:34 Download gff for
BO08474.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rumi-RA | 67..988 | 9..931 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:57:25 Download gff for
BO08474.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rumi-RA | 67..988 | 9..931 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:57:25 Download gff for
BO08474.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22749560..22750338 | 153..931 | 99 | <- | Minus |
3R | 22750389..22750531 | 9..152 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:56:34 Download gff for
BO08474.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18575282..18576060 | 153..931 | 99 | <- | Minus |
arm_3R | 18576111..18576253 | 9..152 | 97 | | Minus |
BO08474.complete Sequence
1267 bp (1267 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631211
> BO08474.complete
GAAGTTATCAGTCGACATGCTAATAAATCATTTAATAGTCGTATTATTAA
TTAGTTTGGTAGGAACAGGAGGTGCAGAAGATGACGGACTTTGCAGTGCC
GATCAAAAATCCTGTGCACAAAGTGAACCCGACCAAATAAACGAGGATGA
ATTTAGCTTCAAGATACGTCGCCAGATCGAAAAAGCCAATGCCGACTACA
AGCCGTGCAGCAGTGATCCCCAGGACAGCGACTGCTCCTGCCACGCAAAT
GTTCTGAAACGGGATCTCGCGCCCTACAAGTCAACAGGTGTCACCCGGCA
GATGATCGAGAGTTCAGCGCGTTACGGCACCAAATACAAGATCTACGGAC
ATCGCCTGTACCGGGATGCCAACTGCATGTTCCCAGCCCGCTGTGAGGGC
ATTGAACACTTCCTGCTGCCGCTGGTGGCTACGCTGCCCGACATGGACTT
GATCATCAATACCAGGGACTATCCGCAGCTGAATGCGGCGTGGGGTAACG
CGGCTGGTGGTCCCGTCTTCTCCTTCTCCAAGACAAAGGAGTACCGCGAC
ATCATGTATCCAGCGTGGACATTCTGGGCCGGAGGACCGGCCACCAAGCT
CCATCCTCGTGGCATTGGACGCTGGGATCAGATGCGCGAGAAGCTGGAGA
AGCGAGCGGCAGCTATACCCTGGTCACAGAAACGCAGTCTGGGCTTCTTT
CGCGGTTCACGCACCTCGGACGAACGTGATTCTCTTATTCTGCTCTCGCG
CCGCAATCCGGAGCTAGTCGAGGCTCAATACACCAAAAATCAGGGCTGGA
AGTCGCCTAAGGATACACTGGACGCACCGGCTGCTGATGAGGTGTCCTTC
GAGGACCACTGCAAGTACAAGTACTTGTTCAATTTCCGCGGTGTGGCCGC
CAGTTTTCGTCTGAAGCACTTGTTCCTCTGCAAGTCGCTGGTCTTCCATG
TGGGCGACGAGTGGCAGGAGTTCTTCTACGACCAACTAAAGCCCTGGGTG
CACTATGTGCCGCTCAAGAGCTACCCCAGTCAGCAGGAGTACGAGCACAT
CTTGTCCTTTTTCAAGAAAAACGATGCGCTGGCCCAGGAGATCGCTCAGC
GTGGATACGACTTCATCTGGGAGCATTTGCGCATGAAGGACATCAAGTGC
TATTGGCGCAAGCTGCTCAAGCGATATGTGAAGCTGCTGCAATACGAGGT
TAAGCCGGAGGATCAACTTATTTACATAGGGCCTAAAAAGGATGAGCTGG
CAAGCTTTCTAGACCAT
BO08474.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:53:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rumi-RA | 1236 | CG31152-PA | 1..1233 | 17..1249 | 6165 | 100 | Plus |
rumi-RB | 951 | CG31152-PB | 1..948 | 302..1249 | 4740 | 100 | Plus |
CG31139-RC | 939 | CG31139-PC | 541..674 | 869..1002 | 325 | 82.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:53:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rumi-RA | 1534 | CG31152-RA | 74..1306 | 17..1249 | 6165 | 100 | Plus |
rumi-RB | 1530 | CG31152-RB | 74..1302 | 17..1249 | 6070 | 99.7 | Plus |
CG31139-RC | 1308 | CG31139-RC | 857..990 | 869..1002 | 325 | 82.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:53:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22749242..22750338 | 1249..153 | 5485 | 100 | Minus |
3R | 32079331 | 3R | 22750389..22750524 | 152..17 | 680 | 100 | Minus |
3R | 32079331 | 3R | 22748008..22748141 | 1002..869 | 325 | 82.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 19:53:39 has no hits.
BO08474.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:12:07 Download gff for
BO08474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rumi-RA | 1..1236 | 17..1250 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:33:01 Download gff for
BO08474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rumi-RA | 31..1274 | 9..1255 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:04:18 Download gff for
BO08474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rumi-RA | 74..1306 | 17..1251 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:12:07 Download gff for
BO08474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rumi-RA | 31..1274 | 9..1255 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:10:16 Download gff for
BO08474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rumi-RA | 74..1306 | 17..1251 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:10:16 Download gff for
BO08474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22750389..22750524 | 17..152 | 100 | | Minus |
3R | 22749238..22750338 | 153..1251 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:04:18 Download gff for
BO08474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18576111..18576246 | 17..152 | 100 | | Minus |
arm_3R | 18574960..18576060 | 153..1251 | 99 | <- | Minus |
BO08474.pep Sequence
Translation from 16 to 1267
> BO08474.pep
MLINHLIVVLLISLVGTGGAEDDGLCSADQKSCAQSEPDQINEDEFSFKI
RRQIEKANADYKPCSSDPQDSDCSCHANVLKRDLAPYKSTGVTRQMIESS
ARYGTKYKIYGHRLYRDANCMFPARCEGIEHFLLPLVATLPDMDLIINTR
DYPQLNAAWGNAAGGPVFSFSKTKEYRDIMYPAWTFWAGGPATKLHPRGI
GRWDQMREKLEKRAAAIPWSQKRSLGFFRGSRTSDERDSLILLSRRNPEL
VEAQYTKNQGWKSPKDTLDAPAADEVSFEDHCKYKYLFNFRGVAASFRLK
HLFLCKSLVFHVGDEWQEFFYDQLKPWVHYVPLKSYPSQQEYEHILSFFK
KNDALAQEIAQRGYDFIWEHLRMKDIKCYWRKLLKRYVKLLQYEVKPEDQ
LIYIGPKKDELASFLDH
BO08474.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:55:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rumi-PA | 411 | CG31152-PA | 1..411 | 1..411 | 2222 | 100 | Plus |
rumi-PB | 316 | CG31152-PB | 1..316 | 96..411 | 1724 | 100 | Plus |
CG31139-PA | 397 | CG31139-PA | 22..389 | 26..408 | 952 | 47.4 | Plus |
CG31139-PC | 312 | CG31139-PC | 1..304 | 96..408 | 870 | 50.6 | Plus |