Clone BO08475 Report

Search the DGRC for BO08475

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:84
Well:75
Vector:pDNR-Dual
Associated Gene/TranscriptCG2316-RA
Protein status:BO08475.pep: validated full length
Sequenced Size:2224

Clone Sequence Records

BO08475.3prime Sequence

952 bp (805 high quality bases) assembled on 2006-01-06

> BO08475.3prime
ATGGTCTAGAAAGCTTGCCGATAGAAATTGTCCTTTTTGTTCTTCATCTG
AATTCATTTTTCTAAACTGCCAGTTTCCAAGACCGTCAAACTCCAAAATA
TGTGTGTGATATTTCCACAAAGTAGGCCTGTGTGTTATGGTTAACAAAGT
AATTCCCATTCCTTTAGCAATTTCATAAATCGAGCTTTCAACATCTATAG
ATACTGCACTGGTGCATTCATCAAGAAGGGCATAGCGCGGTCTATGATAA
AACAAACGGGCTATCGCCATACGTTGTTTTTCACCTCCGGATAATATATC
CTTCCAATCACGAACAACGTCAAAGCTATCCCGTTGAGCGATGTGCTCAA
GGCTGACCATTTTCAAAATGGATCTTAGCTCGTTTTCAGTTATATGCTTG
CGTTTCATATCTTCCCTCGTGTCAGGGTATATAATTTGATCACACAGGCT
GCCGATTGACATATATGGACGTTGGGGAATGTAAAACATACATGGAACGT
CTTTCACAGGCCTTGGTATGTGCAACTCCCCTGCGTATATAGGCCAAAGT
CCACTTAGTATTCTAAACAAGCTCGATTTTCCACATCCATTTGGCCCAGT
TATTAACAAGTGCACACCAGGCTCTATGCACAATGTAAGTTTTGGTACAA
CTATATCACAGTTAGGTGTGACCACTGGCACTGCACGAAGGCTAATTGAC
ATATTTTTCGGATCATCTGAATAGATTATGCGACCCTTTGCTATTGGTTT
TCCATTACGAAACTCAATAATACCGTTCGACTGATTGGATTCCATTACAC
TTGTCTTGNCATAAACTCCCAAAGCAGTTTCCTCAAAGACATCCATCATA
CCAGCCACTCTAAATGTGTAGCCAGCAAGCGACACGATTTCCTTGTAAGA
AGACATTAATCGCTCAATCGCGTCTGCTGCGGAAATAGTAAATTTCTAGC
AG

BO08475.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:25:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG2316-PB 2193 CG2316-RB 1273..2190 936..19 4546 99.7 Minus
CG2316-PG 2193 CG2316-RG 1273..2190 936..19 4546 99.7 Minus
CG2316-PA 2193 CG2316-RA 1273..2190 936..19 4546 99.7 Minus
CG2316-PE 2193 CG2316-RE 1273..2190 936..19 4546 99.7 Minus
CG2316-PF 1632 CG2316-RF 712..1629 936..19 4546 99.7 Minus
CG2316-PD 2193 CG2316-RD 1273..2190 936..19 4546 99.7 Minus
CG2316-PC 2193 CG2316-RC 1273..2190 936..19 4546 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:13:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG2316-RH 2614 CG2316-RH 1387..2321 952..19 4624 99.7 Minus
CG2316-RC 2773 CG2316-RC 1546..2480 952..19 4624 99.7 Minus
CG2316-RD 2709 CG2316-RD 1482..2416 952..19 4624 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:13:04
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 185977..186599 331..952 3039 99.5 Plus
4 1348131 4 184669..184798 115..244 650 100 Plus
4 1348131 4 184518..184615 19..116 490 100 Plus
4 1348131 4 185827..185917 242..332 455 100 Plus
Blast to na_te.dros performed on 2015-02-11 18:13:06 has no hits.

BO08475.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:48:13 Download gff for BO08475.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2316-PD 1256..2193 18..952 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:43:20 Download gff for BO08475.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2316-PC 1256..2193 18..952 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:34:48 Download gff for BO08475.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2316-RD 1482..2416 19..952 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:46:57 Download gff for BO08475.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2316-RD 1482..2416 19..952 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:46:57 Download gff for BO08475.3prime
Subject Subject Range Query Range Percent Splice Strand
4 184516..184614 18..115 97 <- Plus
4 184670..184795 116..241 100 <- Plus
4 185827..185916 242..331 100 <- Plus
4 185978..186599 332..952 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:34:48 Download gff for BO08475.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_4 205142..205240 18..115 97 <- Plus
arm_4 205296..205421 116..241 100 <- Plus
arm_4 206453..206542 242..331 100 <- Plus
arm_4 206604..207225 332..952 99   Plus

BO08475.5prime Sequence

914 bp (900 high quality bases) assembled on 2006-01-06

> BO08475.5prime
GAAGTTATCAGTCGACATGAGTGTTTTATCAAAATATGTTGACCGGATTG
CAGAAAAGTGTGAACATAATGGGTTTACAAAACACGCTTTTAGCTATGCT
CTAGTAACTAGTGCTATCCTAGCACTTACCATTAAAGTTACTATCCCTTA
CGTAAAAAACGTAAATACTACGTCTAGTGTAAGGACCCAAAAAGGAAAAA
CCAATGGCCAACTTTCACCATCGACAAGAGATAGCTCAGAAGAGGATTTC
AAGCTTGCAGAGGCCGAAAAGTTATTGGTTGCACAGCAGCTTAAAAAAAA
AGCTACAAATAATTTAGTTGAGCCTGGTCTAAATAAGGAGTTTTTAAAAC
ATTTGCAAATGTTGGCCAAAATAATGATTCCTCAGGCCTTCTGCTATGAA
ACAGGATTACTAAGCGTTCATACTTTTTGCTTGATTTCTCGAACATTTCT
TAGTATTTATGTTGCCGCATTGGAGGGAGCTCTTGTTAAATTTATAGTTC
GAAAGGATATTAAGCAATTTGCCCTTGTATTGCTTAAATGGTTTGGAATT
GCTATCCCTGCTACTTTCGTTAATTCTATGATACGGTTTCTCGAAAGTAA
ACTGTCTCTGGCGTTTCGAACTCGGCTTGTGCGTCACTCATATCGGCTCT
ATTTTAAAAACCAAAATTACTACAGAGTATCAAATTTGGACGGACGCATT
GAAAACGCGGATCATAGACTTACGGAAGATATTTCTGTGTTCGCAAATTC
TGTAGCTCATTTGTATAGTAGCCTGACTAAACCATGCTTCGATCTGATGC
TTATTGGCTTGGCACTAATGAGATCGTCTAAAAAAATGAAAGCTAACATT
ATAACTGGACCAGCATTATCAATCGGGGGTATTGCCCTTACAGCCCATAT
ATTAGGAATTGTTT

BO08475.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:25:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG2316-PB 2193 CG2316-RB 1..898 17..914 4440 99.7 Plus
CG2316-PG 2193 CG2316-RG 1..898 17..914 4440 99.7 Plus
CG2316-PA 2193 CG2316-RA 1..898 17..914 4440 99.7 Plus
CG2316-PE 2193 CG2316-RE 1..898 17..914 4440 99.7 Plus
CG2316-PD 2193 CG2316-RD 1..898 17..914 4440 99.7 Plus
CG2316-PC 2193 CG2316-RC 1..898 17..914 4440 99.7 Plus
CG2316-PF 1632 CG2316-RF 1..337 578..914 1635 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:09:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG2316-RH 2614 CG2316-RH 132..1029 17..914 4460 99.8 Plus
CG2316-RC 2773 CG2316-RC 291..1188 17..914 4460 99.8 Plus
CG2316-RD 2709 CG2316-RD 227..1124 17..914 4460 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:09:27
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 188578..189179 618..17 3010 100 Minus
4 1348131 4 188229..188372 858..715 720 100 Minus
4 1348131 4 188425..188528 717..614 505 99 Minus
4 1348131 4 188113..188170 914..857 260 96.6 Minus
Blast to na_te.dros performed on 2015-02-10 23:09:30 has no hits.

BO08475.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:48:14 Download gff for BO08475.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2316-PC 1..898 17..914 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:43:22 Download gff for BO08475.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2316-PB 1..898 17..914 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:28:21 Download gff for BO08475.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2316-RD 213..1124 5..914 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:27:32 Download gff for BO08475.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2316-RD 213..1124 5..914 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:27:32 Download gff for BO08475.5prime
Subject Subject Range Query Range Percent Splice Strand
4 188113..188169 858..914 96 <- Minus
4 188230..188369 718..857 100 <- Minus
4 188425..188523 619..717 100 <- Minus
4 188578..189193 5..618 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:28:21 Download gff for BO08475.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_4 208739..208795 858..914 96 <- Minus
arm_4 208856..208995 718..857 100 <- Minus
arm_4 209051..209149 619..717 100 <- Minus
arm_4 209204..209819 5..618 99   Minus

BO08475.complete Sequence

2224 bp (2224 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631212

> BO08475.complete
GAAGTTATCAGTCGACATGAGTGTTTTATCAAAATATGTTGACCGGATTG
CAGAAAAGTGTGAACATAATGGGTTTACAAAACACGCTTTTAGCTATGCT
CTAGTAACTAGTGCTATCCTAGCACTTACCATTAAAGTTACTATCCCTTA
CGTAAAAAACGTAAATACTACGTCTAGTGTAAGGACCCAAAAAGGAAAAA
CCAATGGCCAACTTTCACCATCGACAAGAGATAGCTCAGAAGAGGATTTC
AAGCTTGCAGAGGCCGAAAAGTTATTGGTTGCACAGCAGCTTAAAAAAAA
AGCTACAAATAATTTAGTTGAGCCTGGTCTAAATAAGGAGTTTTTAAAAC
ATTTGCAAATGTTGGCCAAAATAATGATTCCTCAGGCCTTCTGCTATGAA
ACAGGATTACTAAGCGTTCATACTTTTTGCTTGATTTCTCGAACATTTCT
TAGTATTTATGTTGCCGCATTGGAGGGAGCTCTTGTTAAATTTATAGTTC
GAAAGGATATTAAGCAATTTGCCCTTGTATTGCTTAAATGGTTTGGAATT
GCTATCCCTGCTACTTTCGTTAATTCTATGATACGGTTTCTCGAAAGTAA
ACTGTCTCTGGCGTTTCGAACTCGGCTTGTGCGTCACTCATATCGGCTCT
ATTTTAAAAACCAAAATTACTACAGAGTATCAAATTTGGACGGACGCATT
GAAAACGCGGATCATAGACTTACGGAAGATATTTCTGTGTTCGCAAATTC
TGTAGCTCATTTGTATAGTAGCCTGACTAAACCATGCTTCGATCTGATGC
TTATTGGCTTGGCACTAATGAGATCGTCTAAAAAAATGAAAGCTAACATT
ATAACTGGACCAGCATTATCAATCGGGGTTATTGCCCTTACAGCCCATAT
ATTAAGAATTGTTTCACCGAAGTTCGGACAGCTGGTATCGGAAGAAGCAA
ATAGATATGGGTATTTAAGACATATACACTCCCGCATAATAACAAATGCG
GAAGAAATTGCTTTTTACGGAGGTCATAAGGTGGAAATGCAGCAGCTAAG
GCAGGCATACAACCGCCTGGTAAATCAAATGACTACAATTTTTAACCAAA
AGCTTTGGTTTATAATGCTTGAACAATTTTTTATGAAATACGTTTGGTCG
GGTACTGGAATGATTATGGTATCACTTCCAATTTTGACCGGCAGTGACGT
AGGACTTGGAACCGTTCCCAACACGGCCATATCGGAATCCCGAGTTAGCG
AACGCACTCAATATCTAACTACTGCTAGAAATTTACTAATTTCCGCAGCA
GACGCGATTGAGCGATTAATGTCTTCTTACAAGGAAATCGTGTCGCTTGC
TGGCTACACATTTAGAGTGGCTGGTATGATGGATGTCTTTGAGGAAACTG
CTTTGGGAGTTTATTGCAAGACAAGTGTAATGGAATCCAATCAGTCGAAC
GGTATTATTGAGTTTCGTAATGGAAAACCAATAGCAAAGGGTCGCATAAT
CTATTCAGATGATCCGAAAAATATGTCAATTAGCCTTCGTGCAGTGCCAG
TGGTCACACCTAACTGTGATATAGTTGTACCAAAACTTACATTGTGCATA
GAGCCTGGTGTGCACTTGTTAATAACTGGGCCAAATGGATGTGGAAAATC
GAGCTTGTTTAGAATACTAAGTGGACTTTGGCCTATATACGCAGGGGAGT
TGCACATACCAAGGCCTGTGAAAGACGTTCCATGTATGTTTTACATTCCC
CAACGTCCATATATGTCAATCGGCAGCCTGTGTGATCAAATTATATACCC
TGACACGAGGGAAGATATGAAACGCAAGCATATAACTGAAAACGAGCTAA
GATCCATTTTGAAAATGGTCAGCCTTGAGCACATCGCTCAACGGGATAGC
TTTGACGTTGTTCGTGATTGGAAGGATATATTATCCGGAGGTGAAAAACA
ACGTATGGCGATAGCCCGTTTGTTTTATCATAGACCGCGCTATGCCCTTC
TTGATGAATGCACCAGTGCAGTATCTATAGATGTTGAAAGCTCGATTTAT
GAAATTGCTAAAGGAATGGGAATTACTTTGTTAACCATAACACACAGGCC
TACTTTGTGGAAATATCACACACATATTTTGGAGTTTGACGGTCTTGGAA
ACTGGCAGTTTAGAAAAATGAATTCAGATGAAGAACAAAAAGGACAATTT
CTATCGGCAAGCTTTCTAGACCAT

BO08475.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:01:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG2316-RH 2193 CG2316-PH 1..2190 17..2206 10950 100 Plus
CG2316-RC 2193 CG2316-PC 1..2190 17..2206 10950 100 Plus
CG2316-RD 2193 CG2316-PD 1..2190 17..2206 10950 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:01:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG2316-RH 2614 CG2316-RH 132..2321 17..2206 10950 100 Plus
CG2316-RC 2773 CG2316-RC 291..2480 17..2206 10950 100 Plus
CG2316-RD 2709 CG2316-RD 227..2416 17..2206 10950 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:01:27
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 185977..186842 1894..1029 4330 100 Minus
4 1348131 4 188578..189179 618..17 3010 100 Minus
4 1348131 4 187994..188170 1033..857 885 100 Minus
4 1348131 4 188229..188372 858..715 720 100 Minus
4 1348131 4 184669..184798 2110..1981 650 100 Minus
4 1348131 4 188425..188528 717..614 505 99 Minus
4 1348131 4 184518..184615 2206..2109 490 100 Minus
4 1348131 4 185827..185917 1983..1893 455 100 Minus
Blast to na_te.dros performed on 2014-11-26 16:01:28 has no hits.

BO08475.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:00:33 Download gff for BO08475.complete
Subject Subject Range Query Range Percent Splice Strand
CG2316-RA 1..2193 17..2207 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:18:54 Download gff for BO08475.complete
Subject Subject Range Query Range Percent Splice Strand
CG2316-RA 160..2363 5..2206 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:50:25 Download gff for BO08475.complete
Subject Subject Range Query Range Percent Splice Strand
CG2316-RD 227..2416 17..2208 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:00:35 Download gff for BO08475.complete
Subject Subject Range Query Range Percent Splice Strand
CG2316-RA 160..2363 5..2206 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:09:28 Download gff for BO08475.complete
Subject Subject Range Query Range Percent Splice Strand
CG2316-RD 227..2416 17..2208 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:09:28 Download gff for BO08475.complete
Subject Subject Range Query Range Percent Splice Strand
4 184516..184614 2110..2208 97 <- Minus
4 184670..184795 1984..2109 100 <- Minus
4 185827..185916 1894..1983 100 <- Minus
4 185978..186840 1031..1893 100 <- Minus
4 187997..188169 858..1030 100 <- Minus
4 188230..188369 718..857 100 <- Minus
4 188425..188523 619..717 100 <- Minus
4 188578..189179 17..618 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:50:25 Download gff for BO08475.complete
Subject Subject Range Query Range Percent Splice Strand
arm_4 205142..205240 2110..2208 97 <- Minus
arm_4 205296..205421 1984..2109 100 <- Minus
arm_4 206453..206542 1894..1983 100 <- Minus
arm_4 206604..207466 1031..1893 100 <- Minus
arm_4 208623..208795 858..1030 100 <- Minus
arm_4 208856..208995 718..857 100 <- Minus
arm_4 209051..209149 619..717 100 <- Minus
arm_4 209204..209805 17..618 100   Minus

BO08475.pep Sequence

Translation from 16 to 2224

> BO08475.pep
MSVLSKYVDRIAEKCEHNGFTKHAFSYALVTSAILALTIKVTIPYVKNVN
TTSSVRTQKGKTNGQLSPSTRDSSEEDFKLAEAEKLLVAQQLKKKATNNL
VEPGLNKEFLKHLQMLAKIMIPQAFCYETGLLSVHTFCLISRTFLSIYVA
ALEGALVKFIVRKDIKQFALVLLKWFGIAIPATFVNSMIRFLESKLSLAF
RTRLVRHSYRLYFKNQNYYRVSNLDGRIENADHRLTEDISVFANSVAHLY
SSLTKPCFDLMLIGLALMRSSKKMKANIITGPALSIGVIALTAHILRIVS
PKFGQLVSEEANRYGYLRHIHSRIITNAEEIAFYGGHKVEMQQLRQAYNR
LVNQMTTIFNQKLWFIMLEQFFMKYVWSGTGMIMVSLPILTGSDVGLGTV
PNTAISESRVSERTQYLTTARNLLISAADAIERLMSSYKEIVSLAGYTFR
VAGMMDVFEETALGVYCKTSVMESNQSNGIIEFRNGKPIAKGRIIYSDDP
KNMSISLRAVPVVTPNCDIVVPKLTLCIEPGVHLLITGPNGCGKSSLFRI
LSGLWPIYAGELHIPRPVKDVPCMFYIPQRPYMSIGSLCDQIIYPDTRED
MKRKHITENELRSILKMVSLEHIAQRDSFDVVRDWKDILSGGEKQRMAIA
RLFYHRPRYALLDECTSAVSIDVESSIYEIAKGMGITLLTITHRPTLWKY
HTHILEFDGLGNWQFRKMNSDEEQKGQFLSASFLDH

BO08475.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:58:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG2316-PH 730 CG2316-PH 1..730 1..730 3738 100 Plus
CG2316-PC 730 CG2316-PC 1..730 1..730 3738 100 Plus
CG2316-PD 730 CG2316-PD 1..730 1..730 3738 100 Plus
CG2316-PA 730 CG2316-PA 1..730 1..730 3738 100 Plus
CG2316-PG 730 CG2316-PG 1..730 1..730 3738 100 Plus