Clone Sequence Records
BO08477.3prime Sequence
942 bp (768 high quality bases) assembled on 2006-01-06
> BO08477.3prime
ATGGTCTAGAAAGCTTGCGTTCTGTTTAACAAAACGTCCGACTAGCAGGT
GATTCTTTGGCGTACACTGTTCGGGCTTTAAGCGTGTGAGAATGACCTGG
TAGCCCGCCTCCTCCGCCTGCAGCAGGCGATCGGTGTCCACCACGGACAT
GCAGTGGAGTCCTTGAAGCGTGGTTTCTGGCTTGCAGTTGGTTGTCCCCA
TCTCGTGTGCCTGATCTGCCGAGTGGGCAATGTACAAGTAGTCCTTTGTG
TCTAACACCTTTTGGAACGCTTTGCTCAATGGGTACGAAATGTGAGGCAT
GGGCTGCAGAGAACCGTAGCAGCAAGGACAGCAAACAAAATGTGCCTTGG
CTCTCCGGCACTGCTGCAAAACGATATCTGTCGCCGTTCCACACGCGTGC
AAAGAGGCCCCGATCTTGAATCCTCCGACAAAGTAATCTATGTTGCATTG
GTAAAAAACGCAGTTGGTCAAACCCAATTCGTTTGATCTTTTCTGAGCTT
GAAGCAGGGAGAAAGCTTTGTTTTCCATCACAATAATGGTACAATTTGGC
AGCTTGAGGGCCAGCAGTATGGCCAAATGCCCTGTGCCGCTGCAGAAGTC
CACAATGCGGTCGCCCGGTTGAGCCAGGGAAACCACCGCATTGGCCAAGT
TCTCTAGCTGCTGCCTCTTGCGCTCGAGTCTCTCCTTGGGCAGCGCTGAA
CTCTTAGCATGAGTGGGCTCAATCTGCTCCCAGTCGATCAGCTGCTGGCC
ATAGGTGTGCTCCGAATCGGAATTAAATTGCAGTTGCAGCGAGGAAAGCT
TACTTAGAGCCGCTTCCAACTCCAACTGACTAGTGTAAATCCGATTTCTT
GGCTTGTATCGCTTGGGATCGGGCTTGTACAGACTGGTGGCCTCGCAGTC
GGGGATTCCAGTTCTCCGGGAGGGGTCTTAATTGCTTGCNGC
BO08477.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:25:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10428-PA | 1758 | CG10428-RA | 865..1755 | 909..19 | 4380 | 99.6 | Minus |
CG10428-PA | 1758 | CG10428-RA | 834..865 | 939..908 | 160 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 07:31:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10428-RA | 1921 | CG10428-RA | 948..1869 | 939..19 | 4540 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 07:31:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18950000..18950921 | 939..19 | 4515 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-01 07:31:16 has no hits.
BO08477.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:48:17 Download gff for
BO08477.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10428-PA | 831..1758 | 16..942 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:43:26 Download gff for
BO08477.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10428-PA | 831..1758 | 16..942 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:15:18 Download gff for
BO08477.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10428-RA | 945..1876 | 11..942 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:44:38 Download gff for
BO08477.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10428-RA | 945..1876 | 11..942 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:44:38 Download gff for
BO08477.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18949997..18950928 | 11..942 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:15:18 Download gff for
BO08477.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18949997..18950928 | 11..942 | 99 | | Minus |
BO08477.5prime Sequence
895 bp (823 high quality bases) assembled on 2006-01-06
> BO08477.5prime
GAAGTTATCAGTCGACATGGATCAGTTGTACCTGGAGATCGAGATCAGCA
CTCAAAAAGAGACCACCATTTATACTGGTGTGTCCTCGTTCTTGGCTTTG
TTTACTTACAAATTTTTGAAAGATCCCAAAAATGTGCGAGTAAACTTCGT
TTCCACAAAGATCGAAGGCGGTAAAATAGCTTTACGGAGTTCCCAACTCA
AAAAGGAACTGACCGACCGGCACATCACATGCAGGGATGCCGCATCCTTG
CCTGCCATCCAGGATCTAAAACTTCCAATCTACGAGAAGGACGGAAATAC
ATTCATAGCAGGAACGTGTGCCGTTTGCCGAGAGCTTATTGCAAGACAAC
CAAATGAGGAACTCAAGAAACTTTTAGGCTTTAAGGGAAGCTGCCTCTTG
GCTCCGTCAGAAGCATCGATTTGGACTAAGTTCTGTGAGGTGGATTTAGT
GGCTGTTGTCAGTAAACTTCATAGTGGGCAAGTTTTGGAATTCGTCCCCC
AAGAAGTAGTGAGGTTCGAGCAGCACATGAACGAACCGGTGAGGATGCAT
AACATCTATAAACAGGCCAGAGAGCAGGCCAATCAGACTGAGAATGGCGG
CAAGGTCAAGAGGAGAGAACGAGTGCAAATCAAGTGCACTACACCTAAGG
AAGAGCTGCTTATTGAGCACCGCTTCGCCGAGGGCATCAGTTTCACAATT
GCGGATATAATTTTGTACCCCCTTTTGAGAATTGTCTTCCAACATTGCGG
GCAGATGCTGCCCCATTTTCCACTCACTAGTACCTGGTTCAGCGAGATCG
ACTCTTTCGGCGATAAATGCGCCAGGGTTCTAAGAGATCTTTATGTGCCG
CAAGCAATTAGAACCCCTCCGGAGAACTGGAAATCCCGACTGCGA
BO08477.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:25:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10428-PA | 1758 | CG10428-RA | 1..844 | 17..860 | 4220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:31:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10428-RA | 1921 | CG10428-RA | 115..995 | 17..895 | 4310 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:31:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18949428..18949894 | 330..796 | 2335 | 100 | Plus |
2L | 23513712 | 2L | 18949200..18949372 | 158..330 | 865 | 100 | Plus |
2L | 23513712 | 2L | 18948998..18949141 | 17..160 | 720 | 100 | Plus |
2L | 23513712 | 2L | 18949945..18950038 | 795..887 | 375 | 95.7 | Plus |
Blast to na_te.dros performed on 2015-02-10 03:31:03 has no hits.
BO08477.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:48:18 Download gff for
BO08477.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10428-PA | 1..880 | 17..894 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:43:28 Download gff for
BO08477.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10428-PA | 1..880 | 17..894 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:44:30 Download gff for
BO08477.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10428-RA | 115..994 | 17..894 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:16:55 Download gff for
BO08477.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10428-RA | 115..994 | 17..894 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:16:55 Download gff for
BO08477.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18948998..18949141 | 17..160 | 100 | -> | Plus |
2L | 18949203..18949372 | 161..330 | 100 | -> | Plus |
2L | 18949429..18949894 | 331..796 | 100 | -> | Plus |
2L | 18949947..18950046 | 797..894 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:44:30 Download gff for
BO08477.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18948998..18949141 | 17..160 | 100 | -> | Plus |
arm_2L | 18949203..18949372 | 161..330 | 100 | -> | Plus |
arm_2L | 18949429..18949894 | 331..796 | 100 | -> | Plus |
arm_2L | 18949947..18950046 | 797..894 | 95 | | Plus |
BO08477.complete Sequence
1789 bp (1789 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631214
> BO08477.complete
GAAGTTATCAGTCGACATGGATCAGTTGTACCTGGAGATCGAGATCAGCA
CTCAAAAAGAGACCACCATTTATACTGGTGTGTCCTCGTTCTTGGCTTTG
TTTACTTACAAATTTTTGAAAGATCCCAAAAATGTGCGAGTAAACTTCGT
TTCCACAAAGATCGAAGGCGGTAAAATAGCTTTACGGAGTTCCCAACTCA
AAAAGGAACTGACCGACCGGCACATCACATGCAGGGATGCCGCATCCTTG
CCTGCCATCCAGGATCTAAAACTTCCAATCTACGAGAAGGACGGAAATAC
ATTCATAGCAGGAACGTGTGCCGTTTGCCGAGAGCTTATTGCAAGACAAC
CAAATGAGGAACTCAAGAAACTTTTAGGCTTTAAGGGAAGCTGCCTCTTG
GCTCCGTCAGAAGCATCGATTTGGACTAAGTTCTGTGAGGTGGATTTAGT
GGCTGTTGTCAGTAAACTTCATAGTGGGCAAGTTTTGGAATTCGTCCCCC
AAGAAGTAGTGAGGTTCGAGCAGCACATGAACGAACCGGTGAGGATGCAT
AACATCTATAAACAGGCCAGAGAGCAGGCCAATCAGACTGAGAATGGCGG
CAAGGTCAAGAGGAGAGAACGAGTGCAAATCAAGTGCACTACACCTAAGG
AAGAGCTGCTTATTGAGCACCGCTTCGCCGAGGGCATCAGTTTCACAATT
GCGGATATAATTTTGTACCCCCTTTTGAGAATTGTCTTCCAACATTGCGG
GCAGATGCTGCCCCATTTTCCACTCACTAGTACCTGGTTCAGCGAGATCG
ACTCTTTCGGCGATAAATGCGCCAGGGTTCTAAGAGATCTTTATGTGCCG
CAAGCAATTAAGACCCCTCCCGGAGAACTGGGAATCCCCGACTGCGAGGC
CACCAGTCTGTACAAAGCCGATCCCAAGCGATACAAGCCAAGAAATCGGA
TTTACACTAGTCAGTTGGAGTTGGAAGCGGCTCTAAGTAAGCTTTCCTCG
CTGCAACTGCAATTTAATTCCGATTCGGAGCACACCTATGGCCAGCAGCT
GATCGACTGGGAGCAGATTGAGCCCACTCATGCTAAGAGTTCAGCGCTGC
CCAAGGAGAGACTCGAGCGCAAGAGGCAGCAGCTAGAGAACTTGGCCAAT
GCGGTGGTTTCCCTGGCTCAACCGGGCGACCGCATTGTGGACTTCTGCAG
CGGCACAGGGCATTTGGCCATACTGCTGGCCCTCAAGCTGCCAAATTGTA
CCATTATTGTGATGGAAAACAAAGCTTTCTCCCTGCTTCAAGCTCAGAAA
AGATCAAACGAATTGGGTTTGACCAACTGCGTTTTTTACCAATGCAACAT
AGATTACTTTGTCGGAGGATTCAAGATCGGGGCCTCTTTGCACGCGTGTG
GAACGGCGACAGATATCGTTTTGCAGCAGTGCCGGAGAGCCAAGGCACAT
TTTGTTTGCTGTCCTTGCTGCTACGGTTCTCTGCAGCCCATGCCTCACAT
TTCGTACCCATTGAGCAAAGCGTTCCAAAAGGTGTTAGACACAAAGGACT
ACTTGTACATTGCCCACTCGGCAGATCAGGCACACGAGATGGGGACAACC
AACTGCAAGCCAGAAACCACGCTTCAAGGACTCCACTGCATGTCCGTGGT
GGACACCGATCGCCTGCTGCAGGCGGAGGAGGCGGGCTACCAGGTCATTC
TCACACGCTTAAAGCCCGAACAGTGTACGCCAAAGAATCACCTGCTAGTC
GGACGTTTTGTTAAACAGAACGCAAGCTTTCTAGACCAT
BO08477.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:02:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10428-RA | 1758 | CG10428-PA | 1..1755 | 17..1771 | 8760 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:02:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10428-RA | 1921 | CG10428-RA | 115..1869 | 17..1771 | 8760 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:02:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18949945..18950921 | 795..1771 | 4870 | 99.9 | Plus |
2L | 23513712 | 2L | 18949428..18949894 | 330..796 | 2335 | 100 | Plus |
2L | 23513712 | 2L | 18949200..18949372 | 158..330 | 865 | 100 | Plus |
2L | 23513712 | 2L | 18948998..18949141 | 17..160 | 720 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:02:13 has no hits.
BO08477.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:00:19 Download gff for
BO08477.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10428-RA | 1..1758 | 17..1774 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:18:36 Download gff for
BO08477.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10428-RA | 102..1863 | 17..1779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:44:10 Download gff for
BO08477.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10428-RA | 115..1869 | 17..1773 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:00:19 Download gff for
BO08477.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10428-RA | 102..1863 | 17..1779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:13:15 Download gff for
BO08477.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10428-RA | 115..1869 | 17..1773 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:13:15 Download gff for
BO08477.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18949203..18949372 | 161..330 | 100 | -> | Plus |
2L | 18948998..18949141 | 17..160 | 100 | -> | Plus |
2L | 18949429..18949894 | 331..796 | 100 | -> | Plus |
2L | 18949947..18950921 | 797..1773 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:44:10 Download gff for
BO08477.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18948998..18949141 | 17..160 | 100 | -> | Plus |
arm_2L | 18949203..18949372 | 161..330 | 100 | -> | Plus |
arm_2L | 18949429..18949894 | 331..796 | 100 | -> | Plus |
arm_2L | 18949947..18950921 | 797..1773 | 99 | | Plus |
BO08477.pep Sequence
Translation from 16 to 1789
> BO08477.pep
MDQLYLEIEISTQKETTIYTGVSSFLALFTYKFLKDPKNVRVNFVSTKIE
GGKIALRSSQLKKELTDRHITCRDAASLPAIQDLKLPIYEKDGNTFIAGT
CAVCRELIARQPNEELKKLLGFKGSCLLAPSEASIWTKFCEVDLVAVVSK
LHSGQVLEFVPQEVVRFEQHMNEPVRMHNIYKQAREQANQTENGGKVKRR
ERVQIKCTTPKEELLIEHRFAEGISFTIADIILYPLLRIVFQHCGQMLPH
FPLTSTWFSEIDSFGDKCARVLRDLYVPQAIKTPPGELGIPDCEATSLYK
ADPKRYKPRNRIYTSQLELEAALSKLSSLQLQFNSDSEHTYGQQLIDWEQ
IEPTHAKSSALPKERLERKRQQLENLANAVVSLAQPGDRIVDFCSGTGHL
AILLALKLPNCTIIVMENKAFSLLQAQKRSNELGLTNCVFYQCNIDYFVG
GFKIGASLHACGTATDIVLQQCRRAKAHFVCCPCCYGSLQPMPHISYPLS
KAFQKVLDTKDYLYIAHSADQAHEMGTTNCKPETTLQGLHCMSVVDTDRL
LQAEEAGYQVILTRLKPEQCTPKNHLLVGRFVKQNASFLDH
BO08477.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:58:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10428-PA | 585 | CG10428-PA | 1..585 | 1..585 | 3061 | 100 | Plus |