Clone BO08477 Report

Search the DGRC for BO08477

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:84
Well:77
Vector:pDNR-Dual
Associated Gene/TranscriptCG10428-RA
Protein status:BO08477.pep: validated full length
Sequenced Size:1789

Clone Sequence Records

BO08477.3prime Sequence

942 bp (768 high quality bases) assembled on 2006-01-06

> BO08477.3prime
ATGGTCTAGAAAGCTTGCGTTCTGTTTAACAAAACGTCCGACTAGCAGGT
GATTCTTTGGCGTACACTGTTCGGGCTTTAAGCGTGTGAGAATGACCTGG
TAGCCCGCCTCCTCCGCCTGCAGCAGGCGATCGGTGTCCACCACGGACAT
GCAGTGGAGTCCTTGAAGCGTGGTTTCTGGCTTGCAGTTGGTTGTCCCCA
TCTCGTGTGCCTGATCTGCCGAGTGGGCAATGTACAAGTAGTCCTTTGTG
TCTAACACCTTTTGGAACGCTTTGCTCAATGGGTACGAAATGTGAGGCAT
GGGCTGCAGAGAACCGTAGCAGCAAGGACAGCAAACAAAATGTGCCTTGG
CTCTCCGGCACTGCTGCAAAACGATATCTGTCGCCGTTCCACACGCGTGC
AAAGAGGCCCCGATCTTGAATCCTCCGACAAAGTAATCTATGTTGCATTG
GTAAAAAACGCAGTTGGTCAAACCCAATTCGTTTGATCTTTTCTGAGCTT
GAAGCAGGGAGAAAGCTTTGTTTTCCATCACAATAATGGTACAATTTGGC
AGCTTGAGGGCCAGCAGTATGGCCAAATGCCCTGTGCCGCTGCAGAAGTC
CACAATGCGGTCGCCCGGTTGAGCCAGGGAAACCACCGCATTGGCCAAGT
TCTCTAGCTGCTGCCTCTTGCGCTCGAGTCTCTCCTTGGGCAGCGCTGAA
CTCTTAGCATGAGTGGGCTCAATCTGCTCCCAGTCGATCAGCTGCTGGCC
ATAGGTGTGCTCCGAATCGGAATTAAATTGCAGTTGCAGCGAGGAAAGCT
TACTTAGAGCCGCTTCCAACTCCAACTGACTAGTGTAAATCCGATTTCTT
GGCTTGTATCGCTTGGGATCGGGCTTGTACAGACTGGTGGCCTCGCAGTC
GGGGATTCCAGTTCTCCGGGAGGGGTCTTAATTGCTTGCNGC

BO08477.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:25:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG10428-PA 1758 CG10428-RA 865..1755 909..19 4380 99.6 Minus
CG10428-PA 1758 CG10428-RA 834..865 939..908 160 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 07:31:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG10428-RA 1921 CG10428-RA 948..1869 939..19 4540 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 07:31:13
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18950000..18950921 939..19 4515 99.6 Minus
Blast to na_te.dros performed on 2015-02-01 07:31:16 has no hits.

BO08477.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:48:17 Download gff for BO08477.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10428-PA 831..1758 16..942 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:43:26 Download gff for BO08477.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10428-PA 831..1758 16..942 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:15:18 Download gff for BO08477.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10428-RA 945..1876 11..942 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:44:38 Download gff for BO08477.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10428-RA 945..1876 11..942 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:44:38 Download gff for BO08477.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 18949997..18950928 11..942 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:15:18 Download gff for BO08477.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18949997..18950928 11..942 99   Minus

BO08477.5prime Sequence

895 bp (823 high quality bases) assembled on 2006-01-06

> BO08477.5prime
GAAGTTATCAGTCGACATGGATCAGTTGTACCTGGAGATCGAGATCAGCA
CTCAAAAAGAGACCACCATTTATACTGGTGTGTCCTCGTTCTTGGCTTTG
TTTACTTACAAATTTTTGAAAGATCCCAAAAATGTGCGAGTAAACTTCGT
TTCCACAAAGATCGAAGGCGGTAAAATAGCTTTACGGAGTTCCCAACTCA
AAAAGGAACTGACCGACCGGCACATCACATGCAGGGATGCCGCATCCTTG
CCTGCCATCCAGGATCTAAAACTTCCAATCTACGAGAAGGACGGAAATAC
ATTCATAGCAGGAACGTGTGCCGTTTGCCGAGAGCTTATTGCAAGACAAC
CAAATGAGGAACTCAAGAAACTTTTAGGCTTTAAGGGAAGCTGCCTCTTG
GCTCCGTCAGAAGCATCGATTTGGACTAAGTTCTGTGAGGTGGATTTAGT
GGCTGTTGTCAGTAAACTTCATAGTGGGCAAGTTTTGGAATTCGTCCCCC
AAGAAGTAGTGAGGTTCGAGCAGCACATGAACGAACCGGTGAGGATGCAT
AACATCTATAAACAGGCCAGAGAGCAGGCCAATCAGACTGAGAATGGCGG
CAAGGTCAAGAGGAGAGAACGAGTGCAAATCAAGTGCACTACACCTAAGG
AAGAGCTGCTTATTGAGCACCGCTTCGCCGAGGGCATCAGTTTCACAATT
GCGGATATAATTTTGTACCCCCTTTTGAGAATTGTCTTCCAACATTGCGG
GCAGATGCTGCCCCATTTTCCACTCACTAGTACCTGGTTCAGCGAGATCG
ACTCTTTCGGCGATAAATGCGCCAGGGTTCTAAGAGATCTTTATGTGCCG
CAAGCAATTAGAACCCCTCCGGAGAACTGGAAATCCCGACTGCGA

BO08477.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:25:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG10428-PA 1758 CG10428-RA 1..844 17..860 4220 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:31:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG10428-RA 1921 CG10428-RA 115..995 17..895 4310 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:31:00
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18949428..18949894 330..796 2335 100 Plus
2L 23513712 2L 18949200..18949372 158..330 865 100 Plus
2L 23513712 2L 18948998..18949141 17..160 720 100 Plus
2L 23513712 2L 18949945..18950038 795..887 375 95.7 Plus
Blast to na_te.dros performed on 2015-02-10 03:31:03 has no hits.

BO08477.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:48:18 Download gff for BO08477.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10428-PA 1..880 17..894 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:43:28 Download gff for BO08477.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10428-PA 1..880 17..894 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:44:30 Download gff for BO08477.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10428-RA 115..994 17..894 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:16:55 Download gff for BO08477.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10428-RA 115..994 17..894 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:16:55 Download gff for BO08477.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 18948998..18949141 17..160 100 -> Plus
2L 18949203..18949372 161..330 100 -> Plus
2L 18949429..18949894 331..796 100 -> Plus
2L 18949947..18950046 797..894 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:44:30 Download gff for BO08477.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18948998..18949141 17..160 100 -> Plus
arm_2L 18949203..18949372 161..330 100 -> Plus
arm_2L 18949429..18949894 331..796 100 -> Plus
arm_2L 18949947..18950046 797..894 95   Plus

BO08477.complete Sequence

1789 bp (1789 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631214

> BO08477.complete
GAAGTTATCAGTCGACATGGATCAGTTGTACCTGGAGATCGAGATCAGCA
CTCAAAAAGAGACCACCATTTATACTGGTGTGTCCTCGTTCTTGGCTTTG
TTTACTTACAAATTTTTGAAAGATCCCAAAAATGTGCGAGTAAACTTCGT
TTCCACAAAGATCGAAGGCGGTAAAATAGCTTTACGGAGTTCCCAACTCA
AAAAGGAACTGACCGACCGGCACATCACATGCAGGGATGCCGCATCCTTG
CCTGCCATCCAGGATCTAAAACTTCCAATCTACGAGAAGGACGGAAATAC
ATTCATAGCAGGAACGTGTGCCGTTTGCCGAGAGCTTATTGCAAGACAAC
CAAATGAGGAACTCAAGAAACTTTTAGGCTTTAAGGGAAGCTGCCTCTTG
GCTCCGTCAGAAGCATCGATTTGGACTAAGTTCTGTGAGGTGGATTTAGT
GGCTGTTGTCAGTAAACTTCATAGTGGGCAAGTTTTGGAATTCGTCCCCC
AAGAAGTAGTGAGGTTCGAGCAGCACATGAACGAACCGGTGAGGATGCAT
AACATCTATAAACAGGCCAGAGAGCAGGCCAATCAGACTGAGAATGGCGG
CAAGGTCAAGAGGAGAGAACGAGTGCAAATCAAGTGCACTACACCTAAGG
AAGAGCTGCTTATTGAGCACCGCTTCGCCGAGGGCATCAGTTTCACAATT
GCGGATATAATTTTGTACCCCCTTTTGAGAATTGTCTTCCAACATTGCGG
GCAGATGCTGCCCCATTTTCCACTCACTAGTACCTGGTTCAGCGAGATCG
ACTCTTTCGGCGATAAATGCGCCAGGGTTCTAAGAGATCTTTATGTGCCG
CAAGCAATTAAGACCCCTCCCGGAGAACTGGGAATCCCCGACTGCGAGGC
CACCAGTCTGTACAAAGCCGATCCCAAGCGATACAAGCCAAGAAATCGGA
TTTACACTAGTCAGTTGGAGTTGGAAGCGGCTCTAAGTAAGCTTTCCTCG
CTGCAACTGCAATTTAATTCCGATTCGGAGCACACCTATGGCCAGCAGCT
GATCGACTGGGAGCAGATTGAGCCCACTCATGCTAAGAGTTCAGCGCTGC
CCAAGGAGAGACTCGAGCGCAAGAGGCAGCAGCTAGAGAACTTGGCCAAT
GCGGTGGTTTCCCTGGCTCAACCGGGCGACCGCATTGTGGACTTCTGCAG
CGGCACAGGGCATTTGGCCATACTGCTGGCCCTCAAGCTGCCAAATTGTA
CCATTATTGTGATGGAAAACAAAGCTTTCTCCCTGCTTCAAGCTCAGAAA
AGATCAAACGAATTGGGTTTGACCAACTGCGTTTTTTACCAATGCAACAT
AGATTACTTTGTCGGAGGATTCAAGATCGGGGCCTCTTTGCACGCGTGTG
GAACGGCGACAGATATCGTTTTGCAGCAGTGCCGGAGAGCCAAGGCACAT
TTTGTTTGCTGTCCTTGCTGCTACGGTTCTCTGCAGCCCATGCCTCACAT
TTCGTACCCATTGAGCAAAGCGTTCCAAAAGGTGTTAGACACAAAGGACT
ACTTGTACATTGCCCACTCGGCAGATCAGGCACACGAGATGGGGACAACC
AACTGCAAGCCAGAAACCACGCTTCAAGGACTCCACTGCATGTCCGTGGT
GGACACCGATCGCCTGCTGCAGGCGGAGGAGGCGGGCTACCAGGTCATTC
TCACACGCTTAAAGCCCGAACAGTGTACGCCAAAGAATCACCTGCTAGTC
GGACGTTTTGTTAAACAGAACGCAAGCTTTCTAGACCAT

BO08477.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:02:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG10428-RA 1758 CG10428-PA 1..1755 17..1771 8760 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:02:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG10428-RA 1921 CG10428-RA 115..1869 17..1771 8760 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:02:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18949945..18950921 795..1771 4870 99.9 Plus
2L 23513712 2L 18949428..18949894 330..796 2335 100 Plus
2L 23513712 2L 18949200..18949372 158..330 865 100 Plus
2L 23513712 2L 18948998..18949141 17..160 720 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:02:13 has no hits.

BO08477.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:00:19 Download gff for BO08477.complete
Subject Subject Range Query Range Percent Splice Strand
CG10428-RA 1..1758 17..1774 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:18:36 Download gff for BO08477.complete
Subject Subject Range Query Range Percent Splice Strand
CG10428-RA 102..1863 17..1779 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:44:10 Download gff for BO08477.complete
Subject Subject Range Query Range Percent Splice Strand
CG10428-RA 115..1869 17..1773 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:00:19 Download gff for BO08477.complete
Subject Subject Range Query Range Percent Splice Strand
CG10428-RA 102..1863 17..1779 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:13:15 Download gff for BO08477.complete
Subject Subject Range Query Range Percent Splice Strand
CG10428-RA 115..1869 17..1773 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:13:15 Download gff for BO08477.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18949203..18949372 161..330 100 -> Plus
2L 18948998..18949141 17..160 100 -> Plus
2L 18949429..18949894 331..796 100 -> Plus
2L 18949947..18950921 797..1773 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:44:10 Download gff for BO08477.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18948998..18949141 17..160 100 -> Plus
arm_2L 18949203..18949372 161..330 100 -> Plus
arm_2L 18949429..18949894 331..796 100 -> Plus
arm_2L 18949947..18950921 797..1773 99   Plus

BO08477.pep Sequence

Translation from 16 to 1789

> BO08477.pep
MDQLYLEIEISTQKETTIYTGVSSFLALFTYKFLKDPKNVRVNFVSTKIE
GGKIALRSSQLKKELTDRHITCRDAASLPAIQDLKLPIYEKDGNTFIAGT
CAVCRELIARQPNEELKKLLGFKGSCLLAPSEASIWTKFCEVDLVAVVSK
LHSGQVLEFVPQEVVRFEQHMNEPVRMHNIYKQAREQANQTENGGKVKRR
ERVQIKCTTPKEELLIEHRFAEGISFTIADIILYPLLRIVFQHCGQMLPH
FPLTSTWFSEIDSFGDKCARVLRDLYVPQAIKTPPGELGIPDCEATSLYK
ADPKRYKPRNRIYTSQLELEAALSKLSSLQLQFNSDSEHTYGQQLIDWEQ
IEPTHAKSSALPKERLERKRQQLENLANAVVSLAQPGDRIVDFCSGTGHL
AILLALKLPNCTIIVMENKAFSLLQAQKRSNELGLTNCVFYQCNIDYFVG
GFKIGASLHACGTATDIVLQQCRRAKAHFVCCPCCYGSLQPMPHISYPLS
KAFQKVLDTKDYLYIAHSADQAHEMGTTNCKPETTLQGLHCMSVVDTDRL
LQAEEAGYQVILTRLKPEQCTPKNHLLVGRFVKQNASFLDH

BO08477.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:58:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG10428-PA 585 CG10428-PA 1..585 1..585 3061 100 Plus