Clone Sequence Records
BO08479.3prime Sequence
964 bp (854 high quality bases) assembled on 2006-01-06
> BO08479.3prime
ATGGTCTAGAAAGCTTGCTGTGTCGGATTCATTGGAATCATCACTACCGG
GCGGTATGGTCGGTGTCTCATAATCGTAATAGACCGGATAACGCGGCTTA
AAGGGCTCACTTGTGGTAACATCAGCCTGAGCGGACAAAATGCTGCTCAT
GCTAACGTTGGTCAAGAACTCAGTGTCATCGCTGAACTTCTCACTTAGAG
CCATGGCGTCTTCATATGATGGCGGCATCATGGGTATATAGTCCGGCGGA
TTATCGCTATCACTGGTCACCAAAATCGCTGGCATGGCCGTTGGCCTGAG
GGCGGCAGTTGTTGGCGTTGATGAGGGCGTGGAGCTTGTGGGCGTGGGAC
TGACATTCGTTATCATATTCATATTGCTATTGGTCGGCAGTAGTCCGCCC
ACAAGGCGTCCATGATTGTTGTTGTTGTTGTTGATGCTGCTGATACGTCG
CTGCTGAACTGAGGCACTTATCCGGTCCCGATCTCGATCTCGATCTCTTT
CGCGATCCACATTCATATCACGATCACGATCCCGATCCCTTTGACGCTGC
TGCGTCGACATTTGTAAATTTTGACTAACTACTTGGTGCTGTTGCTGCTG
GCGATTGAAACGCAACAGGGCCTCCGGACCATCCATGATCGGTATACTGC
CGATGGTCAGCGGAATCTTCAGCTTAAGTTTCCAGTGAAACTCCGTGGGG
TTCACGATGATCTTAATCGAATAGTTAACGCTAATGGGGCACGTGGGCTT
CACCGAAGTGGGCGGTATCGACGGCAGGTCGAGATACCCACGGTACACCT
TTCTCGACCATCTCAGCACGTTTCCGAACTGCTTCCCGCGCATCAGGTGC
TTGTCGTAGCGGTACTCATGCTGCGGATCGTGCGACTCGTAGCTCACCTC
CTGCTTCAGCTTGACCTCGCATTCGATTATGTCGATCGAGGACTCGTTGT
TGATGTACAGCACG
BO08479.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:25:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2993-PA | 1536 | CG2993-RA | 716..1533 | 836..19 | 4090 | 100 | Minus |
CG2993-PA | 1536 | CG2993-RA | 588..710 | 964..842 | 615 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:18:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2993-RA | 2961 | CG2993-RA | 1449..2394 | 964..19 | 4685 | 99.8 | Minus |
CG2993-RC | 3339 | CG2993-RC | 1449..2365 | 964..48 | 4540 | 99.8 | Minus |
CG2993-RB | 3276 | CG2993-RB | 1449..2302 | 964..111 | 4225 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 11:18:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7806912..7807648 | 228..964 | 3610 | 99.3 | Plus |
3R | 32079331 | 3R | 7806562..7806770 | 19..227 | 1045 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 11:18:18 has no hits.
BO08479.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:48:20 Download gff for
BO08479.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2993-PA | 588..1536 | 15..964 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:43:32 Download gff for
BO08479.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2993-PA | 588..1536 | 15..964 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:34:36 Download gff for
BO08479.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2993-RA | 1449..2397 | 15..964 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:44:02 Download gff for
BO08479.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2993-RA | 1449..2397 | 15..964 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:44:02 Download gff for
BO08479.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7806558..7806770 | 15..227 | 99 | <- | Plus |
3R | 7806912..7807648 | 228..964 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:34:36 Download gff for
BO08479.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3632280..3632492 | 15..227 | 99 | <- | Plus |
arm_3R | 3632634..3633370 | 228..964 | 99 | | Plus |
BO08479.5prime Sequence
899 bp (741 high quality bases) assembled on 2006-01-06
> BO08479.5prime
GAGGGTATCAGGCGACATGCGCATTGGGTGCCTTATATCATTTGATAATA
ATCCACAAGGTGTCTACTATGCCGGACAGGAGCTATCCGGCGTTGTTGAT
CTCAGCGTCGACGCCGCGAAGCGCATTAAAGGCATCCACGTCACCGTCAG
CGGCTATGCCAAGATACGCTGGATAAAAAAGGGATATCCGCGCGACAGCG
AGCGCGCCATGTGCCGTGCCTACCGATCGTATCTGTCCTCGCGGTCCTAC
GTCCTCGGATCCTGCGCGAACAACTCGAGCATCGACTGGCCGGCCGGCGA
GTACTCGTACACCTTCCACGTGATTCTGCCCGACAATCTGCCTACGTCCT
TCGACGGCAAGTATGGCCAGATCCACTACGAGATCATAACAACGATCGAA
AGGGCCGCTCGCCACCCGAAGGTCTTTAAGCTGCCATTTACCGTAATACA
ACCGCTGGACCTGAACGCAGATGCAATTTACAGGGTTCCTCTGGAGATCC
TCGATCGGAAACGGTTCTGGAGCTTCTGCTGCCCCACAGGCCCGCTGACG
GTGAAGTTCTCGACGCCTTACTGCGGATATGCGCCCGGCCAGAAGATCCA
CTTCGTGCTGTACATCAACAACGAGTCCTCGATCGACATAATCGAATGCG
AGGTCAAGCTGAAGCAGGAGGTGAGCTACGAGTCGCACGATCCGCAGCAT
GAGTACCGCTACGACAAGCACCTGATTGCGCGGAAGCAGTTCGGAAACGT
GCTGAGATGGTCGAGAAAGGTGTACCGTGGGTATCTCGACCTGCCGTCGA
TACCGCCCACTTCGGTGAAGCCCACGTGCCCCATTAGCGTTAACTATTCG
ATTAAGATCATCGTGAACCCCACGGAGTTTCACTGGAAACTTAAGCTGA
BO08479.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:25:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2993-PA | 1536 | CG2993-RA | 6..883 | 22..899 | 4340 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:10:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2993-RC | 3339 | CG2993-RC | 862..1744 | 17..899 | 4370 | 99.7 | Plus |
CG2993-RB | 3276 | CG2993-RB | 862..1744 | 17..899 | 4370 | 99.7 | Plus |
CG2993-RA | 2961 | CG2993-RA | 862..1744 | 17..899 | 4370 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:10:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7807353..7807768 | 899..484 | 2080 | 100 | Minus |
3R | 32079331 | 3R | 7807972..7808328 | 486..130 | 1785 | 100 | Minus |
3R | 32079331 | 3R | 7809038..7809153 | 132..17 | 535 | 97.4 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:10:22 has no hits.
BO08479.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:48:21 Download gff for
BO08479.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2993-PA | 1..882 | 17..898 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:43:33 Download gff for
BO08479.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2993-PA | 1..882 | 17..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:21:03 Download gff for
BO08479.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2993-RA | 862..1743 | 17..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:54:13 Download gff for
BO08479.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2993-RA | 862..1743 | 17..898 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:54:13 Download gff for
BO08479.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7807354..7807767 | 485..898 | 100 | <- | Minus |
3R | 7807974..7808326 | 132..484 | 100 | <- | Minus |
3R | 7809039..7809153 | 17..131 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:21:03 Download gff for
BO08479.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3633076..3633489 | 485..898 | 100 | <- | Minus |
arm_3R | 3633696..3634048 | 132..484 | 100 | <- | Minus |
arm_3R | 3634761..3634875 | 17..131 | 97 | | Minus |
BO08479.complete Sequence
1567 bp assembled on 2008-11-10
GenBank Submission: KX794555
> BO08479.complete
GAAGTTATCAGTCGACATGCCCATTGAGTGCCTTATATCATTTGATAATA
ATCCACAAGGTGTCTACTATGCCGGACAGGAGCTATCCGGCGTTGTTGAT
CTCAGCGTCGACGCCACGAAGCGCATTAAAGGCATCCACGTCACCGTCAG
CGGCTATGCCAAGATACGCTGGATAAAAAAGGGATATCCGCGCGACAGCG
AGCGCGCCATGTGCCGTGCCTACCGATCGTATCTGTCCTCGCGGTCCTAC
GTCCTCGGATCCTGCGCGAACAACTCGAGCATCGACTGGCCGGCCGGCGA
GTACTCGTACACCTTCCACGTGATTCTGCCCGACAATCTGCCTACGTCCT
TCGACGGCAAGTATGGCCAGATCCACTACGAGATCATAACAACGATCGAA
AGGGCCGCTCGCCACCCGAAGGTCTTTAAGCTGCCATTTACCGTAATACA
ACCGCTGGACCTGAACGCAGATGCAATTTACAGGGTTCCTCTGGAGATCC
TCGATCGGAAACGGTTCTGGAGCTTCTGCTGCCCCACAGGCCCGCTGACG
GTGAAGTTCTCGACGCCTTACTGCGGATATGCGCCCGGCCAGAAGATCCA
CTTCGTGCTGTACATCAACAACGAGTCCTCGATCGACATAATCGAATGCG
AGGTCAAGCTGAAGCAGGAGGTGAGCTACGAGTCGCACGATCCGCAGCAT
GAGTACCGCTACGACAAGCACCTGATTGCGCGGAAGCAGTTCGGAAACGT
GCTGAGATGGTCGAGAAAGGTGTACCGTGGGTATCTCGACCTGCCGTCGA
TACCGCCCACTTCGGTGAAGCCCACGTGCCCCATTAGCGTTAACTATTCG
ATTAAGATCATCGTGAACCCCACGGAGTTTCACTGGAAACTTAAGCTGAA
GATTCCGCTGACCATCGGCAGTATACCGATCATGGATGGTCCGGAGGCCC
TGTTGCGTTTCAATCGCCAGCAGCAACAGCACCAAGTAGTTAGTCAAAAT
TTACAAATGTCGACGCAGCAGCGTCAAAGGGATCGGGATCGTGATCGTGA
TATGAATGTGGATCGCGAAAGAGATCGAGATCGAGATCGGGACCGGATAA
GTGCCTCAGTTCAGCAGCGACGTATCAGCAGCATCAACAACAACAACAAC
AATCATGGACGCCTTGTGGGCGGACTACTGCCGACCAATAGCAATATGAA
TATGATAACGAATGTCAGTCCCACGCCCACAAGCTCCACGCCCTCATCAA
CGCCAACAACTGCCGCCCTCAGGCCAACGGCCATGCCAGCGATTTTGGTG
ACCAGTGATAGCGATAATCCGCCGGACTATATACCCATGATGCCGCCATC
ATATGAAGACGCCATGGCTCTAAGTGAGAAGTTCAGCGATGACACTGAGT
TCTTGACCAACGTTAGCATGAGCAGCATTTTGTCCGCTCAGGCTGATGTT
ACCACAAGTGAGCCCTTTAAGCCGCGTTATCCGGTCTATTACGATTATGA
GACACCGACCATACCGCCCGGTAGTGATGATTCCAATGAATCCGACACAG
CAAGCTTTCTAGACCAT
BO08479.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:54:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2993-RA | 1536 | CG2993-PA | 1..1533 | 17..1549 | 7665 | 100 | Plus |
CG2993-RC | 1638 | CG2993-PC | 1..1504 | 17..1520 | 7520 | 100 | Plus |
CG2993-RB | 1575 | CG2993-PB | 1..1441 | 17..1457 | 7205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:54:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2993-RA | 2961 | CG2993-RA | 862..2394 | 17..1549 | 7665 | 100 | Plus |
CG2993-RC | 3339 | CG2993-RC | 862..2365 | 17..1520 | 7520 | 100 | Plus |
CG2993-RB | 3276 | CG2993-RB | 862..2302 | 17..1457 | 7205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:54:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7806912..7807768 | 1340..484 | 4285 | 100 | Minus |
3R | 32079331 | 3R | 7807972..7808328 | 486..130 | 1785 | 100 | Minus |
3R | 32079331 | 3R | 7806562..7806770 | 1549..1341 | 1045 | 100 | Minus |
3R | 32079331 | 3R | 7809038..7809153 | 132..17 | 580 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:54:08 has no hits.
BO08479.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:50:17 Download gff for
BO08479.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2993-RA | 830..2371 | 9..1553 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:34:33 Download gff for
BO08479.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2993-RA | 862..2394 | 17..1551 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:55:12 Download gff for
BO08479.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2993-RA | 836..2368 | 17..1551 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:55:18 Download gff for
BO08479.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2993-RA | 862..2394 | 17..1551 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:55:18 Download gff for
BO08479.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7806560..7806770 | 1341..1551 | 99 | <- | Minus |
3R | 7806912..7807767 | 485..1340 | 100 | <- | Minus |
3R | 7807974..7808326 | 132..484 | 100 | <- | Minus |
3R | 7809039..7809153 | 17..131 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:34:33 Download gff for
BO08479.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3632282..3632492 | 1341..1551 | 99 | <- | Minus |
arm_3R | 3632634..3633489 | 485..1340 | 100 | <- | Minus |
arm_3R | 3633696..3634048 | 132..484 | 100 | <- | Minus |
arm_3R | 3634761..3634875 | 17..131 | 100 | | Minus |
BO08479.pep Sequence
Translation from 16 to 1567
> BO08479.pep
MPIECLISFDNNPQGVYYAGQELSGVVDLSVDATKRIKGIHVTVSGYAKI
RWIKKGYPRDSERAMCRAYRSYLSSRSYVLGSCANNSSIDWPAGEYSYTF
HVILPDNLPTSFDGKYGQIHYEIITTIERAARHPKVFKLPFTVIQPLDLN
ADAIYRVPLEILDRKRFWSFCCPTGPLTVKFSTPYCGYAPGQKIHFVLYI
NNESSIDIIECEVKLKQEVSYESHDPQHEYRYDKHLIARKQFGNVLRWSR
KVYRGYLDLPSIPPTSVKPTCPISVNYSIKIIVNPTEFHWKLKLKIPLTI
GSIPIMDGPEALLRFNRQQQQHQVVSQNLQMSTQQRQRDRDRDRDMNVDR
ERDRDRDRDRISASVQQRRISSINNNNNNHGRLVGGLLPTNSNMNMITNV
SPTPTSSTPSSTPTTAALRPTAMPAILVTSDSDNPPDYIPMMPPSYEDAM
ALSEKFSDDTEFLTNVSMSSILSAQADVTTSEPFKPRYPVYYDYETPTIP
PGSDDSNESDTASFLDH
BO08479.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:16:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2993-PA | 511 | CG2993-PA | 1..511 | 1..511 | 2711 | 100 | Plus |
CG2993-PC | 545 | CG2993-PC | 1..501 | 1..501 | 2659 | 100 | Plus |
CG2993-PB | 524 | CG2993-PB | 1..480 | 1..480 | 2535 | 100 | Plus |
CG14696-PA | 457 | CG14696-PA | 9..317 | 9..306 | 475 | 33.5 | Plus |
CG1105-PA | 422 | CG1105-PA | 6..310 | 5..305 | 439 | 30 | Plus |