Clone BO08479 Report

Search the DGRC for BO08479

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:84
Well:79
Vector:pDNR-Dual
Associated Gene/TranscriptCG2993-RA
Protein status:BO08479.pep: Imported from assembly
Sequenced Size:1567

Clone Sequence Records

BO08479.3prime Sequence

964 bp (854 high quality bases) assembled on 2006-01-06

> BO08479.3prime
ATGGTCTAGAAAGCTTGCTGTGTCGGATTCATTGGAATCATCACTACCGG
GCGGTATGGTCGGTGTCTCATAATCGTAATAGACCGGATAACGCGGCTTA
AAGGGCTCACTTGTGGTAACATCAGCCTGAGCGGACAAAATGCTGCTCAT
GCTAACGTTGGTCAAGAACTCAGTGTCATCGCTGAACTTCTCACTTAGAG
CCATGGCGTCTTCATATGATGGCGGCATCATGGGTATATAGTCCGGCGGA
TTATCGCTATCACTGGTCACCAAAATCGCTGGCATGGCCGTTGGCCTGAG
GGCGGCAGTTGTTGGCGTTGATGAGGGCGTGGAGCTTGTGGGCGTGGGAC
TGACATTCGTTATCATATTCATATTGCTATTGGTCGGCAGTAGTCCGCCC
ACAAGGCGTCCATGATTGTTGTTGTTGTTGTTGATGCTGCTGATACGTCG
CTGCTGAACTGAGGCACTTATCCGGTCCCGATCTCGATCTCGATCTCTTT
CGCGATCCACATTCATATCACGATCACGATCCCGATCCCTTTGACGCTGC
TGCGTCGACATTTGTAAATTTTGACTAACTACTTGGTGCTGTTGCTGCTG
GCGATTGAAACGCAACAGGGCCTCCGGACCATCCATGATCGGTATACTGC
CGATGGTCAGCGGAATCTTCAGCTTAAGTTTCCAGTGAAACTCCGTGGGG
TTCACGATGATCTTAATCGAATAGTTAACGCTAATGGGGCACGTGGGCTT
CACCGAAGTGGGCGGTATCGACGGCAGGTCGAGATACCCACGGTACACCT
TTCTCGACCATCTCAGCACGTTTCCGAACTGCTTCCCGCGCATCAGGTGC
TTGTCGTAGCGGTACTCATGCTGCGGATCGTGCGACTCGTAGCTCACCTC
CTGCTTCAGCTTGACCTCGCATTCGATTATGTCGATCGAGGACTCGTTGT
TGATGTACAGCACG

BO08479.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:25:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG2993-PA 1536 CG2993-RA 716..1533 836..19 4090 100 Minus
CG2993-PA 1536 CG2993-RA 588..710 964..842 615 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:18:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG2993-RA 2961 CG2993-RA 1449..2394 964..19 4685 99.8 Minus
CG2993-RC 3339 CG2993-RC 1449..2365 964..48 4540 99.8 Minus
CG2993-RB 3276 CG2993-RB 1449..2302 964..111 4225 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 11:18:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7806912..7807648 228..964 3610 99.3 Plus
3R 32079331 3R 7806562..7806770 19..227 1045 100 Plus
Blast to na_te.dros performed on 2015-02-06 11:18:18 has no hits.

BO08479.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:48:20 Download gff for BO08479.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2993-PA 588..1536 15..964 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:43:32 Download gff for BO08479.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2993-PA 588..1536 15..964 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:34:36 Download gff for BO08479.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2993-RA 1449..2397 15..964 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:44:02 Download gff for BO08479.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2993-RA 1449..2397 15..964 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:44:02 Download gff for BO08479.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 7806558..7806770 15..227 99 <- Plus
3R 7806912..7807648 228..964 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:34:36 Download gff for BO08479.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3632280..3632492 15..227 99 <- Plus
arm_3R 3632634..3633370 228..964 99   Plus

BO08479.5prime Sequence

899 bp (741 high quality bases) assembled on 2006-01-06

> BO08479.5prime
GAGGGTATCAGGCGACATGCGCATTGGGTGCCTTATATCATTTGATAATA
ATCCACAAGGTGTCTACTATGCCGGACAGGAGCTATCCGGCGTTGTTGAT
CTCAGCGTCGACGCCGCGAAGCGCATTAAAGGCATCCACGTCACCGTCAG
CGGCTATGCCAAGATACGCTGGATAAAAAAGGGATATCCGCGCGACAGCG
AGCGCGCCATGTGCCGTGCCTACCGATCGTATCTGTCCTCGCGGTCCTAC
GTCCTCGGATCCTGCGCGAACAACTCGAGCATCGACTGGCCGGCCGGCGA
GTACTCGTACACCTTCCACGTGATTCTGCCCGACAATCTGCCTACGTCCT
TCGACGGCAAGTATGGCCAGATCCACTACGAGATCATAACAACGATCGAA
AGGGCCGCTCGCCACCCGAAGGTCTTTAAGCTGCCATTTACCGTAATACA
ACCGCTGGACCTGAACGCAGATGCAATTTACAGGGTTCCTCTGGAGATCC
TCGATCGGAAACGGTTCTGGAGCTTCTGCTGCCCCACAGGCCCGCTGACG
GTGAAGTTCTCGACGCCTTACTGCGGATATGCGCCCGGCCAGAAGATCCA
CTTCGTGCTGTACATCAACAACGAGTCCTCGATCGACATAATCGAATGCG
AGGTCAAGCTGAAGCAGGAGGTGAGCTACGAGTCGCACGATCCGCAGCAT
GAGTACCGCTACGACAAGCACCTGATTGCGCGGAAGCAGTTCGGAAACGT
GCTGAGATGGTCGAGAAAGGTGTACCGTGGGTATCTCGACCTGCCGTCGA
TACCGCCCACTTCGGTGAAGCCCACGTGCCCCATTAGCGTTAACTATTCG
ATTAAGATCATCGTGAACCCCACGGAGTTTCACTGGAAACTTAAGCTGA

BO08479.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:25:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG2993-PA 1536 CG2993-RA 6..883 22..899 4340 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:10:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG2993-RC 3339 CG2993-RC 862..1744 17..899 4370 99.7 Plus
CG2993-RB 3276 CG2993-RB 862..1744 17..899 4370 99.7 Plus
CG2993-RA 2961 CG2993-RA 862..1744 17..899 4370 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:10:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7807353..7807768 899..484 2080 100 Minus
3R 32079331 3R 7807972..7808328 486..130 1785 100 Minus
3R 32079331 3R 7809038..7809153 132..17 535 97.4 Minus
Blast to na_te.dros performed on 2015-02-13 00:10:22 has no hits.

BO08479.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:48:21 Download gff for BO08479.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2993-PA 1..882 17..898 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:43:33 Download gff for BO08479.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2993-PA 1..882 17..898 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:21:03 Download gff for BO08479.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2993-RA 862..1743 17..898 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:54:13 Download gff for BO08479.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2993-RA 862..1743 17..898 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:54:13 Download gff for BO08479.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 7807354..7807767 485..898 100 <- Minus
3R 7807974..7808326 132..484 100 <- Minus
3R 7809039..7809153 17..131 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:21:03 Download gff for BO08479.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3633076..3633489 485..898 100 <- Minus
arm_3R 3633696..3634048 132..484 100 <- Minus
arm_3R 3634761..3634875 17..131 97   Minus

BO08479.complete Sequence

1567 bp assembled on 2008-11-10

GenBank Submission: KX794555

> BO08479.complete
GAAGTTATCAGTCGACATGCCCATTGAGTGCCTTATATCATTTGATAATA
ATCCACAAGGTGTCTACTATGCCGGACAGGAGCTATCCGGCGTTGTTGAT
CTCAGCGTCGACGCCACGAAGCGCATTAAAGGCATCCACGTCACCGTCAG
CGGCTATGCCAAGATACGCTGGATAAAAAAGGGATATCCGCGCGACAGCG
AGCGCGCCATGTGCCGTGCCTACCGATCGTATCTGTCCTCGCGGTCCTAC
GTCCTCGGATCCTGCGCGAACAACTCGAGCATCGACTGGCCGGCCGGCGA
GTACTCGTACACCTTCCACGTGATTCTGCCCGACAATCTGCCTACGTCCT
TCGACGGCAAGTATGGCCAGATCCACTACGAGATCATAACAACGATCGAA
AGGGCCGCTCGCCACCCGAAGGTCTTTAAGCTGCCATTTACCGTAATACA
ACCGCTGGACCTGAACGCAGATGCAATTTACAGGGTTCCTCTGGAGATCC
TCGATCGGAAACGGTTCTGGAGCTTCTGCTGCCCCACAGGCCCGCTGACG
GTGAAGTTCTCGACGCCTTACTGCGGATATGCGCCCGGCCAGAAGATCCA
CTTCGTGCTGTACATCAACAACGAGTCCTCGATCGACATAATCGAATGCG
AGGTCAAGCTGAAGCAGGAGGTGAGCTACGAGTCGCACGATCCGCAGCAT
GAGTACCGCTACGACAAGCACCTGATTGCGCGGAAGCAGTTCGGAAACGT
GCTGAGATGGTCGAGAAAGGTGTACCGTGGGTATCTCGACCTGCCGTCGA
TACCGCCCACTTCGGTGAAGCCCACGTGCCCCATTAGCGTTAACTATTCG
ATTAAGATCATCGTGAACCCCACGGAGTTTCACTGGAAACTTAAGCTGAA
GATTCCGCTGACCATCGGCAGTATACCGATCATGGATGGTCCGGAGGCCC
TGTTGCGTTTCAATCGCCAGCAGCAACAGCACCAAGTAGTTAGTCAAAAT
TTACAAATGTCGACGCAGCAGCGTCAAAGGGATCGGGATCGTGATCGTGA
TATGAATGTGGATCGCGAAAGAGATCGAGATCGAGATCGGGACCGGATAA
GTGCCTCAGTTCAGCAGCGACGTATCAGCAGCATCAACAACAACAACAAC
AATCATGGACGCCTTGTGGGCGGACTACTGCCGACCAATAGCAATATGAA
TATGATAACGAATGTCAGTCCCACGCCCACAAGCTCCACGCCCTCATCAA
CGCCAACAACTGCCGCCCTCAGGCCAACGGCCATGCCAGCGATTTTGGTG
ACCAGTGATAGCGATAATCCGCCGGACTATATACCCATGATGCCGCCATC
ATATGAAGACGCCATGGCTCTAAGTGAGAAGTTCAGCGATGACACTGAGT
TCTTGACCAACGTTAGCATGAGCAGCATTTTGTCCGCTCAGGCTGATGTT
ACCACAAGTGAGCCCTTTAAGCCGCGTTATCCGGTCTATTACGATTATGA
GACACCGACCATACCGCCCGGTAGTGATGATTCCAATGAATCCGACACAG
CAAGCTTTCTAGACCAT

BO08479.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:54:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG2993-RA 1536 CG2993-PA 1..1533 17..1549 7665 100 Plus
CG2993-RC 1638 CG2993-PC 1..1504 17..1520 7520 100 Plus
CG2993-RB 1575 CG2993-PB 1..1441 17..1457 7205 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:54:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG2993-RA 2961 CG2993-RA 862..2394 17..1549 7665 100 Plus
CG2993-RC 3339 CG2993-RC 862..2365 17..1520 7520 100 Plus
CG2993-RB 3276 CG2993-RB 862..2302 17..1457 7205 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:54:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7806912..7807768 1340..484 4285 100 Minus
3R 32079331 3R 7807972..7808328 486..130 1785 100 Minus
3R 32079331 3R 7806562..7806770 1549..1341 1045 100 Minus
3R 32079331 3R 7809038..7809153 132..17 580 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:54:08 has no hits.

BO08479.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:50:17 Download gff for BO08479.complete
Subject Subject Range Query Range Percent Splice Strand
CG2993-RA 830..2371 9..1553 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:34:33 Download gff for BO08479.complete
Subject Subject Range Query Range Percent Splice Strand
CG2993-RA 862..2394 17..1551 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:55:12 Download gff for BO08479.complete
Subject Subject Range Query Range Percent Splice Strand
CG2993-RA 836..2368 17..1551 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:55:18 Download gff for BO08479.complete
Subject Subject Range Query Range Percent Splice Strand
CG2993-RA 862..2394 17..1551 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:55:18 Download gff for BO08479.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7806560..7806770 1341..1551 99 <- Minus
3R 7806912..7807767 485..1340 100 <- Minus
3R 7807974..7808326 132..484 100 <- Minus
3R 7809039..7809153 17..131 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:34:33 Download gff for BO08479.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3632282..3632492 1341..1551 99 <- Minus
arm_3R 3632634..3633489 485..1340 100 <- Minus
arm_3R 3633696..3634048 132..484 100 <- Minus
arm_3R 3634761..3634875 17..131 100   Minus

BO08479.pep Sequence

Translation from 16 to 1567

> BO08479.pep
MPIECLISFDNNPQGVYYAGQELSGVVDLSVDATKRIKGIHVTVSGYAKI
RWIKKGYPRDSERAMCRAYRSYLSSRSYVLGSCANNSSIDWPAGEYSYTF
HVILPDNLPTSFDGKYGQIHYEIITTIERAARHPKVFKLPFTVIQPLDLN
ADAIYRVPLEILDRKRFWSFCCPTGPLTVKFSTPYCGYAPGQKIHFVLYI
NNESSIDIIECEVKLKQEVSYESHDPQHEYRYDKHLIARKQFGNVLRWSR
KVYRGYLDLPSIPPTSVKPTCPISVNYSIKIIVNPTEFHWKLKLKIPLTI
GSIPIMDGPEALLRFNRQQQQHQVVSQNLQMSTQQRQRDRDRDRDMNVDR
ERDRDRDRDRISASVQQRRISSINNNNNNHGRLVGGLLPTNSNMNMITNV
SPTPTSSTPSSTPTTAALRPTAMPAILVTSDSDNPPDYIPMMPPSYEDAM
ALSEKFSDDTEFLTNVSMSSILSAQADVTTSEPFKPRYPVYYDYETPTIP
PGSDDSNESDTASFLDH

BO08479.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:16:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG2993-PA 511 CG2993-PA 1..511 1..511 2711 100 Plus
CG2993-PC 545 CG2993-PC 1..501 1..501 2659 100 Plus
CG2993-PB 524 CG2993-PB 1..480 1..480 2535 100 Plus
CG14696-PA 457 CG14696-PA 9..317 9..306 475 33.5 Plus
CG1105-PA 422 CG1105-PA 6..310 5..305 439 30 Plus