Clone Sequence Records
BO08480.3prime Sequence
958 bp (823 high quality bases) assembled on 2006-01-06
> BO08480.3prime
ATGGTCTAGAAAGCTTGCGAACAGCAGCGTGCCCATGCCGCCCATTTCGG
ACTGCTCCTTAACGAAAATCTCAAAGTATTGGTAGATGATGGTCACAGCC
AACAGGATACCCGTACCGGAGCCGATGGCCCCCAGGAAGTCGGCCATCAC
AGACAGAGCTCCGATGCAGAGACCACCGAAAGCAGCCGCCGTTGGGATGT
AGCGGTTGAGCTCGTGGATCATCGAGTTCTCGCGATGGCCACGCATCACC
ATGTGCTGCTCCTTCAGCTGCTTGGCAACATCCTTGGCTGAGCTGCCGGA
CACATCGATCCAGGTCTTGGAGAAGAAGGCGCACGAGCCCAACATGAAGA
CAATGTAGAGCAACGCGTGAATGGGGTCGGTCAGGATGTGGCCCACGCTC
TCTGGGGGCGAAAGATAGTAGCACAGACCACCGATGGGATAGGAGCGAGC
CGGGCCGCCGCCTCCAACATCAGCCCACACACCCAGAAGGTTAATGAAGA
AGTTGCCCTGGAACTTGACAGCCAGCATCTGGGAGATGACGTACAAGTTG
GACACGAGCGCAGACTGCAGGATGATGGGAATGTTGGAGGTGTAGAACAG
CTTGATGGGATAGCTGCTGTACTGGCCGCGGTAACGGGCGCTCTTGATGG
GTAGGTCCACGCGGAAGCCTTGGAAGTATATGACCACGGCGAACACCAGC
ACGGTGGCCAGCAGGTTCATCAGATTGGGCAGGTTCTGGCGATAGAAGGC
CTCGCGCAGAGCGCGCACCTTATCGTTCCTGGTGGCCATCAGATGGAACA
GGGCAATCACAGCGCCCTCGAACTCGGTACCGCGTCCCGTCGTCACGGTG
GTGGGGCTGAATGCCTTCCACACAATCGTCTCGCAAATGTTGGTGGCAAT
GAACAGGGAAATTCCCGATCCCAGTCCATAGCCCTTCTGCAGGAGCTCGT
CCAGCAGC
BO08480.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:25:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9539-PA | 1431 | Sec61alpha-RA | 489..1428 | 958..19 | 4700 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 07:38:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sec61alpha-RB | 2128 | CG9539-RB | 734..1673 | 958..19 | 4700 | 100 | Minus |
| Sec61alpha-RA | 2019 | CG9539-RA | 625..1564 | 958..19 | 4700 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 07:38:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6477969..6478649 | 278..958 | 3405 | 100 | Plus |
| 2L | 23513712 | 2L | 6477637..6477897 | 19..279 | 1305 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-01 07:38:38 has no hits.
BO08480.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:48:22 Download gff for
BO08480.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9539-PA | 489..1431 | 15..958 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:43:34 Download gff for
BO08480.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9539-PA | 489..1431 | 15..958 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:16:30 Download gff for
BO08480.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sec61alpha-RA | 625..1577 | 5..958 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:45:31 Download gff for
BO08480.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sec61alpha-RA | 625..1577 | 5..958 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:45:31 Download gff for
BO08480.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6477624..6477897 | 5..279 | 98 | <- | Plus |
| 2L | 6477971..6478649 | 280..958 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:16:30 Download gff for
BO08480.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6477624..6477897 | 5..279 | 98 | <- | Plus |
| arm_2L | 6477971..6478649 | 280..958 | 100 | | Plus |
BO08480.5prime Sequence
927 bp (786 high quality bases) assembled on 2006-01-06
> BO08480.5prime
GAAGTTATCAGTCGACATGGGAATCAAGTTCCTGGAAGTTATCAAACCGT
TCTGCAGTATACTGCCGGAAATCGCAAAACCGGAGCGCAAGATCCAATTC
AGGGAGAAAGTGCTATGGACTGCGATCACCCTGTTCATCTTCCTGGTGTG
CTGCCAGATCCCGCTTTTCGGTATCATGAGCTCAGACTCGGCGGATCCCT
TCTACTGGATCCGTGTGATCCTGGCCTCCAACCGTGGTACGCTCATGGAG
CTGGGTATCTCGCCCATCGTGACCTCTGGCCTCATTATGCAGCTGCTGGC
CGGAGCAAAGATCATTGAGGTCGGTGATACGCCCAAGGATCGTGCTCTGT
TCAACGGTGCTCAGAAGCTCTTCGGCATGGTGATCACCATTGGTCAGGCC
ATCGTCTATGTGATGACTGGCATGTACGGCGATCCGTCGGAGATCGGCGC
CGGTGTCTGCCTGCTGATCATCATCCAGCTGTTCGCCGCTGGTTTGATTG
TGCTGCTGCTGGACGAGCTCCTGCAGAAGGGCTATGGACTGGGATCGGGA
ATTTCCCTGTTCATTGCCACCAACATTTGCGAGACGATTGTGTGGAAGGC
ATTCAGCCCCACCACCGTGACGACGGGACGCGGTACCGAGTTCGAGGGCG
CTGTGATTGCCCTGTTCCATCTGATGGCCACCAGGAACGATAAGGTGCGC
GCTCTGCGCGAGGCCTTCTATCGCCAGAACCTGCCCAATCTGATGAACCT
GCTGGCCACCGTGCTGGTGTTCGCCGTGGTCATATACTTCCAAGGCTTCC
GCGTGGACCTACCATCAAGAGCGCCCGTTACCGCGGCCAGTACAGCAGCT
ATCCCATCAAGCTGTTCTACACCTCCACATTCCCATCATCCTGCAGTCTG
CGCTCGTGTCCAACTGTACGTCATCTC
BO08480.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:25:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9539-PA | 1431 | Sec61alpha-RA | 1..797 | 17..813 | 3985 | 100 | Plus |
| CG9539-PA | 1431 | Sec61alpha-RA | 797..862 | 812..877 | 330 | 100 | Plus |
| CG9539-PA | 1431 | Sec61alpha-RA | 863..901 | 877..915 | 195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:29:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sec61alpha-RB | 2128 | CG9539-RB | 246..1159 | 17..927 | 4495 | 99.7 | Plus |
| Sec61alpha-RA | 2019 | CG9539-RA | 137..1050 | 17..927 | 4495 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:29:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6478224..6479064 | 927..90 | 4055 | 99.6 | Minus |
| 2L | 23513712 | 2L | 6480034..6480101 | 91..24 | 340 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:29:05 has no hits.
BO08480.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:48:23 Download gff for
BO08480.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9539-PA | 1..914 | 17..927 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:43:36 Download gff for
BO08480.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9539-PA | 1..914 | 17..927 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:54:20 Download gff for
BO08480.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sec61alpha-RA | 128..1050 | 8..927 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:51:04 Download gff for
BO08480.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sec61alpha-RA | 128..1050 | 8..927 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:51:04 Download gff for
BO08480.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6480034..6480101 | 24..91 | 100 | <- | Minus |
| 2L | 6478224..6479062 | 92..927 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:54:20 Download gff for
BO08480.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6478224..6479062 | 92..927 | 99 | <- | Minus |
| arm_2L | 6480034..6480101 | 24..91 | 100 | <- | Minus |
BO08480.complete Sequence
1462 bp (1462 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631215
> BO08480.complete
GAAGTTATCAGTCGACATGGGAATCAAGTTCCTGGAAGTTATCAAACCGT
TCTGCAGTATACTGCCGGAAATCGCAAAACCGGAGCGCAAGATCCAATTC
AGGGAGAAAGTGCTATGGACTGCGATCACCCTGTTCATCTTCCTGGTGTG
CTGCCAGATCCCGCTTTTCGGTATCATGAGCTCAGACTCGGCGGATCCCT
TCTACTGGATCCGTGTGATCCTGGCCTCCAACCGTGGTACGCTCATGGAG
CTGGGTATCTCGCCCATCGTGACCTCTGGCCTCATTATGCAGCTGCTGGC
CGGAGCAAAGATCATTGAGGTCGGTGATACGCCCAAGGATCGTGCTCTGT
TCAACGGTGCTCAGAAGCTCTTCGGCATGGTGATCACCATTGGTCAGGCC
ATCGTCTATGTGATGACTGGCATGTACGGCGATCCGTCGGAGATCGGCGC
CGGTGTCTGCCTGCTGATCATCATCCAGCTGTTCGCCGCTGGTTTGATTG
TGCTGCTGCTGGACGAGCTCCTGCAGAAGGGCTATGGACTGGGATCGGGA
ATTTCCCTGTTCATTGCCACCAACATTTGCGAGACGATTGTGTGGAAGGC
ATTCAGCCCCACCACCGTGACGACGGGACGCGGTACCGAGTTCGAGGGCG
CTGTGATTGCCCTGTTCCATCTGATGGCCACCAGGAACGATAAGGTGCGC
GCTCTGCGCGAGGCCTTCTATCGCCAGAACCTGCCCAATCTGATGAACCT
GCTGGCCACCGTGCTGGTGTTCGCCGTGGTCATATACTTCCAAGGCTTCC
GCGTGGACCTACCCATCAAGAGCGCCCGTTACCGCGGCCAGTACAGCAGC
TATCCCATCAAGCTGTTCTACACCTCCAACATTCCCATCATCCTGCAGTC
TGCGCTCGTGTCCAACTTGTACGTCATCTCCCAGATGCTGGCTGTCAAGT
TCCAGGGCAACTTCTTCATTAACCTTCTGGGTGTGTGGGCTGATGTTGGA
GGCGGCGGCCCGGCTCGCTCCTATCCCATCGGTGGTCTGTGCTACTATCT
TTCGCCCCCAGAGAGCGTGGGCCACATCCTGACCGACCCCATTCACGCGT
TGCTCTACATTGTCTTCATGTTGGGCTCGTGCGCCTTCTTCTCCAAGACC
TGGATCGATGTGTCCGGCAGCTCAGCCAAGGATGTTGCCAAGCAGCTGAA
GGAGCAGCACATGGTGATGCGTGGCCATCGCGAGAACTCGATGATCCACG
AGCTCAACCGCTACATCCCAACGGCGGCTGCTTTCGGTGGTCTCTGCATC
GGAGCTCTGTCTGTGATGGCCGACTTCCTGGGGGCCATCGGCTCCGGTAC
GGGTATCCTGTTGGCTGTGACCATCATCTACCAATACTTTGAGATTTTCG
TTAAGGAGCAGTCCGAAATGGGCGGCATGGGCACGCTGCTGTTCGCAAGC
TTTCTAGACCAT
BO08480.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:00:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sec61alpha-RB | 1431 | CG9539-PB | 1..1428 | 17..1444 | 7140 | 100 | Plus |
| Sec61alpha-RA | 1431 | CG9539-PA | 1..1428 | 17..1444 | 7140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:00:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sec61alpha-RB | 2128 | CG9539-RB | 246..1673 | 17..1444 | 7140 | 100 | Plus |
| Sec61alpha-RA | 2019 | CG9539-RA | 137..1564 | 17..1444 | 7140 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:00:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6477969..6479064 | 1185..90 | 5480 | 100 | Minus |
| 2L | 23513712 | 2L | 6477637..6477897 | 1444..1184 | 1305 | 100 | Minus |
| 2L | 23513712 | 2L | 6480034..6480101 | 91..24 | 340 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:00:01 has no hits.
BO08480.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:11:51 Download gff for
BO08480.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sec61alpha-RA | 1..1431 | 17..1448 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:32:41 Download gff for
BO08480.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sec61alpha-RA | 151..1600 | 8..1458 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:23 Download gff for
BO08480.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sec61alpha-RA | 137..1564 | 17..1446 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:11:51 Download gff for
BO08480.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sec61alpha-RA | 151..1600 | 8..1458 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:07:54 Download gff for
BO08480.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sec61alpha-RA | 137..1564 | 17..1446 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:07:54 Download gff for
BO08480.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6477635..6477897 | 1184..1446 | 99 | <- | Minus |
| 2L | 6477971..6479062 | 92..1183 | 100 | <- | Minus |
| 2L | 6480034..6480106 | 17..91 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:23 Download gff for
BO08480.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6477635..6477897 | 1184..1446 | 99 | <- | Minus |
| arm_2L | 6477971..6479062 | 92..1183 | 100 | <- | Minus |
| arm_2L | 6480034..6480106 | 17..91 | 94 | | Minus |
BO08480.pep Sequence
Translation from 16 to 1462
> BO08480.pep
MGIKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPL
FGIMSSDSADPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKII
EVGDTPKDRALFNGAQKLFGMVITIGQAIVYVMTGMYGDPSEIGAGVCLL
IIIQLFAAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTT
VTTGRGTEFEGAVIALFHLMATRNDKVRALREAFYRQNLPNLMNLLATVL
VFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSN
LYVISQMLAVKFQGNFFINLLGVWADVGGGGPARSYPIGGLCYYLSPPES
VGHILTDPIHALLYIVFMLGSCAFFSKTWIDVSGSSAKDVAKQLKEQHMV
MRGHRENSMIHELNRYIPTAAAFGGLCIGALSVMADFLGAIGSGTGILLA
VTIIYQYFEIFVKEQSEMGGMGTLLFASFLDH
BO08480.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:13:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sec61alpha-PB | 476 | CG9539-PB | 1..476 | 1..476 | 2430 | 100 | Plus |
| Sec61alpha-PA | 476 | CG9539-PA | 1..476 | 1..476 | 2430 | 100 | Plus |
