Clone Sequence Records
BO08482.3prime Sequence
818 bp (798 high quality bases) assembled on 2006-01-06
> BO08482.3prime
ATGGTCTAGAAAGCTTGCGCTAACCAGATTTGCGGCTTGAGCTTGCTGCG
TCTGTGCGTTTTTTTTCTTTAGGGGATTAGCGCTGAGGATGCGGGCCGAA
CCCAAACAAGCTGTGTCGTCATAGAATACGGCATATTGTCCTGGTGTAAT
AGCTCTTAAAGGAGCGTCCAACTCGACAAGAAAAGTGTTACTGGGAGAGA
TGCTCAGCTGACAGTCCACCAATGGTTTGGTGTGCTGGAATCGAAAGCGA
CACCTCAAGCTGCCAGTGTCCGAAAGAATCTGTTGGGACTTGGAACACAG
CCAGTTGGGCGGATCGACGGCTATGTGGGTGCTGAGAAGGGCGGGATGGT
TGTGGCCAGATGCCACATAGATGGTATTGCTTGCGGCCTCTTTCCTGGCC
ACAAAATAGGGCTGAAGGAATGAGCTCAGACGGCACCGCTGGCCCACAGT
CCATTGATGGATGCCCTCGTGGTGGCCGACAACGGCTCCACTGTCGATGT
CTAGGAAGGGACCACGTTTGGAAGTGATGTACTCCTGTATGAAGTCCTTG
AAGTTGCGTTTGCCAACGAAACAAATGCCAGTGCTTTCCTTCTTTTTGGC
CAGTCGCTGGAAGCCAATCTTCTTGGCCAAGTCCTTGACCTGGCTCTTCT
GGAAGTCTCCCAAAGGGAACATCGTGCGTTGCAGAGCCTTTCGGGAAATA
CCTGCCAAAAAGAATGTCTGGTCCTTGAACGTATCGGCGGGTATTAGCAA
GCGGGCGTCGTTGTTGGAGGCAATCCCCTCCAGGTAGTTGCCCAGACTAT
TCGGGGCGTAGTGACCCG
BO08482.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:25:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3021-PA | 1170 | CG3021-RA | 368..1167 | 818..19 | 3975 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:43:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3021-RA | 1412 | CG3021-RA | 470..1269 | 818..19 | 3985 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:43:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1027633..1028147 | 533..19 | 2575 | 100 | Minus |
| X | 23542271 | X | 1027260..1027546 | 818..532 | 1420 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:43:45 has no hits.
BO08482.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:48:25 Download gff for
BO08482.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3021-PA | 368..1170 | 15..818 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:43:37 Download gff for
BO08482.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3021-PA | 368..1170 | 15..818 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:55:45 Download gff for
BO08482.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3021-RA | 470..1272 | 15..818 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:52:05 Download gff for
BO08482.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3021-RA | 470..1272 | 15..818 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:52:05 Download gff for
BO08482.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1027260..1027546 | 532..818 | 99 | -> | Minus |
| X | 1027635..1028150 | 15..531 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:55:45 Download gff for
BO08482.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 921293..921579 | 532..818 | 99 | -> | Minus |
| arm_X | 921668..922183 | 15..531 | 99 | | Minus |
BO08482.5prime Sequence
807 bp (788 high quality bases) assembled on 2006-01-06
> BO08482.5prime
AGAGTTATCAGTCGACATGATGTCGCAACGTAGTGGTGGGCGTGTCGGGC
GGCGTGGACAGCGCCGTTTCCGCCCACCTGCTGGCGGAGCAAGGATTCAA
GGTGCTGGGTGTGTTTATGCGCAACTGGGATGAGGCGGACGAAGTGGGTC
GCTGCAGTGGGGAGGCGGATCTGAAGGACGCCGAGTGGGCGTGCCGGCAG
CTCGGCGTGGAGCTGCGTCAGGTGAACTATGTGCGCGAGTACTGGACGGC
GGTGTTCAGCCAGTTTCTGGACGATTACCAAATGGGCTTGACACCAAATC
CGGACATCCTGTGCAATCGCCACATTAAGTTTGACCTCTTTCACAAGCAC
GCCTTGGAAAATCTCGGCTACGATGCCGTGGCCACGGGTCACTACGCCCG
GAATAGTCTGGGCAACTACCTGGAGGGGATTGCCTCCAACAACGACGCCC
GCTTGCTAATACCCGCCGATACGTTCAAGGACCAGACATTCTTTTTGGCA
GGTATTTCCCGAAAGGCTCTGCAACGCACGATGTTCCCTTTGGGAGACTT
CCAGAAGAGCCAGGTCAAGGACTTGGCCAAGAAGATTGGCTTCCAGCGAC
TGGCCAAAAAGAAGGAAAGCACTGGCATTTGTTTCGTTGGCAAACGCAAC
TTCAAGGACTTCATACAGGAGTACATCACTTCCAAACGTGGTCCCTTCCT
AGACATCGACAGTGGAGCCGTTGTCGGCCACCACGAGGGCATCCATCAAT
GGACTGTGGGCCAGCGGTGCCGTCTGAGCTCATTCCTTCAGCCCTATTTT
GTGGCCA
BO08482.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:25:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3021-PA | 1170 | CG3021-RA | 6..790 | 23..807 | 3925 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:11:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3021-RA | 1412 | CG3021-RA | 103..892 | 17..807 | 3930 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:11:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1026898..1027546 | 23..671 | 3245 | 100 | Plus |
| X | 23542271 | X | 1027633..1027770 | 670..807 | 690 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:11:46 has no hits.
BO08482.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:48:26 Download gff for
BO08482.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3021-PA | 1..789 | 17..806 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:43:38 Download gff for
BO08482.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3021-PA | 1..789 | 17..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:21:27 Download gff for
BO08482.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3021-RA | 103..891 | 17..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:54:28 Download gff for
BO08482.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3021-RA | 103..891 | 17..806 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:54:28 Download gff for
BO08482.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1026893..1027546 | 17..671 | 99 | -> | Plus |
| X | 1027635..1027769 | 672..806 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:21:27 Download gff for
BO08482.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 920926..921579 | 17..671 | 99 | -> | Plus |
| arm_X | 921668..921802 | 672..806 | 100 | | Plus |
BO08482.complete Sequence
1201 bp assembled on 2008-11-10
GenBank Submission: KX798635
> BO08482.complete
GAAGTTATCAGTCGACATGATTCGCAACGTAGTGGTGGGCGTGTCGGGCG
GCGTGGACAGCGCCGTTTCCGCCCACCTGCTGGCGGAGCAAGGATTCAAG
GTGCTGGGTGTGTTTATGCGCAACTGGGATGAGGCGGACGAAGTGGGTCG
CTGCAGTGGGGAGGCGGATCTGAAGGACGCCGAGTGGGCGTGCCGGCAGC
TCGGCGTGGAGCTGCGTCAGGTGAACTATGTGCGCGAGTACTGGACGGCG
GTGTTCAGCCAGTTTCTGGACGATTACCAAATGGGCTTGACACCAAATCC
GGACATCCTGTGCAATCGCCACATTAAGTTTGACCTCTTTCACAAGCACG
CCTTGGAAAATCTCGGCTACGATGCCGTGGCCACGGGTCACTACGCCCGG
AATAGTCTGGGCAACTACCTGGAGGGGATTGCCTCCAACAACGACGCCCG
CTTGCTAATACCCGCCGATACGTTCAAGGACCAGACATTCTTTTTGGCAG
GTATTTCCCGAAAGGCTCTGCAACGCACGATGTTCCCTTTGGGAGACTTC
CAGAAGAGCCAGGTCAAGGACTTGGCCAAGAAGATTGGCTTCCAGCGACT
GGCCAAAAAGAAGGAAAGCACTGGCATTTGTTTCGTTGGCAAACGCAACT
TCAAGGACTTCATACAGGAGTACATCACTTCCAAACGTGGTCCCTTCCTA
GACATCGACAGTGGAGCCGTTGTCGGCCACCACGAGGGCATCCATCAATG
GACTGTGGGCCAGCGGTGCCGTCTGAGCTCATTCCTTCAGCCCTATTTTG
TGGCCAGGAAAGAGGCCGCAAGCAATACCATCTATGTGGCATCTGGCCAC
AACCATCCCGCCCTTCTCAGCACCCACATAGCCGTCGATCCGCCCAACTG
GCTGTGTTCCAAGTCCCAACAGATTCTTTCGGACACTGGCAGCTTGAGGT
GTCGCTTTCGATTCCAGCACACCAAACCATTGGTGGACTGTCAGCTGAGC
ATCTCTCCCAGTAACACTTTTCTTGTCGAGTTGGACGCTCCTTTAAGAGC
TATTACACCAGGACAATATGCCGTATTCTATGACGACACAGCTTGTTTGG
GTTCGGCCCGCATCCTCAGCGCTAATCCCCTAAAGAAAAAAAACGCACAG
ACGCAGCAAGCTCAAGCCGCAAATCTGGTTAGCGCAAGCTTTCTAGACCA
T
BO08482.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:05:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3021-RA | 1170 | CG3021-PA | 1..1167 | 17..1183 | 5835 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:05:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3021-RA | 1412 | CG3021-RA | 103..1269 | 17..1183 | 5835 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:05:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1026893..1027546 | 17..670 | 3270 | 100 | Plus |
| X | 23542271 | X | 1027633..1028147 | 669..1183 | 2575 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:05:05 has no hits.
BO08482.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:50:15 Download gff for
BO08482.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3021-RA | 37..1206 | 17..1187 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:33:09 Download gff for
BO08482.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3021-RA | 103..1269 | 17..1185 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:05:21 Download gff for
BO08482.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3021-RA | 37..1203 | 17..1185 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:02:54 Download gff for
BO08482.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3021-RA | 103..1269 | 17..1185 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:02:54 Download gff for
BO08482.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1026893..1027546 | 17..670 | 100 | -> | Plus |
| X | 1027635..1028147 | 671..1185 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:33:09 Download gff for
BO08482.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 920926..921579 | 17..670 | 100 | -> | Plus |
| arm_X | 921668..922180 | 671..1185 | 99 | | Plus |
BO08482.pep Sequence
Translation from 16 to 1201
> BO08482.pep
MIRNVVVGVSGGVDSAVSAHLLAEQGFKVLGVFMRNWDEADEVGRCSGEA
DLKDAEWACRQLGVELRQVNYVREYWTAVFSQFLDDYQMGLTPNPDILCN
RHIKFDLFHKHALENLGYDAVATGHYARNSLGNYLEGIASNNDARLLIPA
DTFKDQTFFLAGISRKALQRTMFPLGDFQKSQVKDLAKKIGFQRLAKKKE
STGICFVGKRNFKDFIQEYITSKRGPFLDIDSGAVVGHHEGIHQWTVGQR
CRLSSFLQPYFVARKEAASNTIYVASGHNHPALLSTHIAVDPPNWLCSKS
QQILSDTGSLRCRFRFQHTKPLVDCQLSISPSNTFLVELDAPLRAITPGQ
YAVFYDDTACLGSARILSANPLKKKNAQTQQAQAANLVSASFLDH
BO08482.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:26:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3021-PA | 389 | CG3021-PA | 1..389 | 1..389 | 2043 | 100 | Plus |
