Clone Sequence Records
BO08501.3prime Sequence
918 bp (829 high quality bases) assembled on 2006-01-06
> BO08501.3prime
ATGGTCTAGAAAGCTTGCGAGGAAGAAGCGACGTCGCGACTCCATGGCGT
GCCGTTTGTTGCTGATTATCCAGGCATAGTCACCGGTCTTGCTGTCGAAT
GTGCCCTCCTGCAGGGAACGTAGTTTCAGGGTGAACCGCGGCCCCAGTTC
GCGCAGCTTTACGCGTTTTCCCTCTTTGGTGAACTCGTAGCGGTGGTGAC
GGAAGAATATGTAATCTCGCTGATTGTGGAACGTCACCGCTCGGCGGCCG
CGGAACTCGGGATCGTGATGGAAGAGGGCACCCAGCATGCGGCCCACGGT
CAGACCCAAACGTGTGGTAAAATTGTTCAGGATCACTTCGGGCCTGTGCT
TGGTTATCTCCTTGTGATCGCGCTTTATGTCCGAGGTGAGCTTCACGTTG
GACAGCTTGAAGTGGGCAGTGGGACCATTGGGCAGATGAATGACCAGCAG
CCCATTGGGCTTTCTGCGATCTTCGTTAACGATCACGACGTCTGTGAACT
CCTCGCGCTCGGCGCTTTTGCATATCTTCTTCACCGACGACTTGTTGCGA
ATCTTAACCAGGGCGTTGGGGAATATGCGCGAAAGCTCCAGTCCAAACTT
ACGCGTCTTGGTCACCGGATTGTCAGCAAAAGTGATCAGCACCTTTGGCT
CGTACGAACGTTCGAAGTACGAGCTGAAATCGTCCAGTTGGAGTTCCTTT
TGCAACTCCTCGTTGTCGGAATCGTTCAGATTGGCCACCTCTGTTTGGTC
CTTCTCTCGCAGGCTCTCTATGGTGTGACCAGGATTGGCGGGTACACCAG
CCTTCCGTCGGGCACGGCGCTCCTGCATTTTTTTCTTGTGCTTCTCCTTC
TTCATTTTTTTGTACAACGCCAAACGCTGCTCCTTGTTGCCCATCCAGCT
GAGGGGATTCAAACAGGA
BO08501.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:25:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6712-PA | 1185 | CG6712-RA | 288..1182 | 913..19 | 4450 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 07:30:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6712-RA | 1336 | CG6712-RA | 373..1273 | 918..19 | 4465 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 07:30:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12095239..12096133 | 19..913 | 4460 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-01 07:30:30 has no hits.
BO08501.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:48:44 Download gff for
BO08501.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6712-PA | 283..1185 | 18..917 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:44:06 Download gff for
BO08501.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6712-PA | 283..1185 | 18..917 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:15:12 Download gff for
BO08501.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6712-RA | 374..1273 | 19..917 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:44:33 Download gff for
BO08501.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6712-RA | 374..1273 | 19..917 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:44:33 Download gff for
BO08501.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12095239..12096138 | 19..917 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:15:12 Download gff for
BO08501.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12095239..12096138 | 19..917 | 99 | | Plus |
BO08501.5prime Sequence
859 bp (856 high quality bases) assembled on 2006-01-06
> BO08501.5prime
GAAGTTATCAGTCGACATGATAAAAATTAAGCGAAAAACAGCCCCTCCGC
CCGTGGAACAGGACTCGGACAGCGATTCCAGCTTTGACGAGGAGGAGCCA
CAGGATTTGGAAGTCCAGGAGGGGCCAGTCACTGATAGCAGCGATGAAGA
AGCCGCCTCCAGCAGCAAAAAAACGGCCAAACAAGGGGAAGCCAGTGAGG
ATTTAAAGGAAGAGGATGATGACGACGATGAGGAGGAGAATGACGACGAC
GACGAAGAAGAGGATGATGACGACGACGACGACAAGAAGACACGAATTCC
TGTTTTGAATCCCCTCAGCTGGATGCGCAACAAGGAGCAGCGTTTGGCGT
TGTACAAAAAAATGAAGAAGGAGAAGCACAAGAAAAAAATGCAGGAGCGC
CGTGCCCGACGGAAGGCTGGTGTACCCGCCAATCCTGGTCACACCATAGA
GAGCCTGCGAGAGAAGGACCAAACAGAGGTGGCCAATCTGAACGATTCCG
ACAACGAGGAGTTGCAAAAGGAACTCCAACTGGACGATTTCAGCTCGTAC
TTCGAACGTTCGTACGAGCCAAAGGTGCTGATCACTTTTGCTGACAATCC
GGTGACCAAGACGCGTAAGTTTGGACTGGAGCTTTCGCGCATATTCCCCA
ACGCCCTGGTTAAGATTCGCAACAAGTCGTCGGTGAAGAAGATATGCAAA
AGCGCCGAGCGCGAGGAGTTCACAGACGTCGTGATCGTTAACGAAGATCG
CAGAAAGCCCAATGGGCTGCTGGTCATTCATCTGCCCAATGGTCCCACTG
CCCACTTCAAGCTGTCCAACGTGAAGCTCACCTCGGACATAAAGCGCGAT
CACAAGGAG
BO08501.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:25:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6712-PA | 1185 | CG6712-RA | 1..843 | 17..859 | 4215 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 10:21:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6712-RA | 1336 | CG6712-RA | 92..934 | 17..859 | 4215 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 10:21:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12095578..12096420 | 859..17 | 4215 | 100 | Minus |
Blast to na_te.dros performed 2015-02-02 10:21:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tom1 | 410 | Tom1 DMTOM1_LTR 410bp | 54..132 | 379..302 | 109 | 60.8 | Minus |
BO08501.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:48:45 Download gff for
BO08501.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6712-PA | 1..843 | 17..859 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:44:07 Download gff for
BO08501.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6712-PA | 1..843 | 17..859 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:28:33 Download gff for
BO08501.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6712-RA | 92..934 | 17..859 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:38:36 Download gff for
BO08501.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6712-RA | 92..934 | 17..859 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:38:36 Download gff for
BO08501.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12095578..12096420 | 17..859 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:28:33 Download gff for
BO08501.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12095578..12096420 | 17..859 | 100 | | Minus |
BO08501.complete Sequence
1216 bp (1216 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631217
> BO08501.complete
GAAGTTATCAGTCGACATGATAAAAATTAAGCGAAAAACAGCCCCTCCGC
CCGTGGAACAGGACTCGGACAGCGATTCCAGCTTTGACGAGGAGGAGCCA
CAGGATTTGGAAGTCCAGGAGGGGCCAGTCACTGATAGCAGCGATGAAGA
AGCCGCCTCCAGCAGCAAAAAAACGGCCAAACAAGGGGAAGCCAGTGAGG
ATTTAAAGGAAGAGGATGATGACGACGATGAGGAGGAGAATGACGACGAC
GACGAAGAAGAGGATGATGACGACGACGACGACAAGAAGACACGAATTCC
TGTTTTGAATCCCCTCAGCTGGATGCGCAACAAGGAGCAGCGTTTGGCGT
TGTACAAAAAAATGAAGAAGGAGAAGCACAAGAAAAAAATGCAGGAGCGC
CGTGCCCGACGGAAGGCTGGTGTACCCGCCAATCCTGGTCACACCATAGA
GAGCCTGCGAGAGAAGGACCAAACAGAGGTGGCCAATCTGAACGATTCCG
ACAACGAGGAGTTGCAAAAGGAACTCCAACTGGACGATTTCAGCTCGTAC
TTCGAACGTTCGTACGAGCCAAAGGTGCTGATCACTTTTGCTGACAATCC
GGTGACCAAGACGCGTAAGTTTGGACTGGAGCTTTCGCGCATATTCCCCA
ACGCCCTGGTTAAGATTCGCAACAAGTCGTCGGTGAAGAAGATATGCAAA
AGCGCCGAGCGCGAGGAGTTCACAGACGTCGTGATCGTTAACGAAGATCG
CAGAAAGCCCAATGGGCTGCTGGTCATTCATCTGCCCAATGGTCCCACTG
CCCACTTCAAGCTGTCCAACGTGAAGCTCACCTCGGACATAAAGCGCGAT
CACAAGGAGATAACCAAGCACAGGCCCGAAGTGATCCTGAACAATTTTAC
CACACGTTTGGGTCTGACCGTGGGCCGCATGCTGGGTGCCCTCTTCCATC
ACGATCCCGAGTTCCGCGGCCGCCGAGCGGTGACGTTCCACAATCAGCGA
GATTACATATTCTTCCGTCACCACCGCTACGAGTTCACCAAAGAGGGAAA
ACGCGTAAAGCTGCGCGAACTGGGGCCGCGGTTCACCCTGAAACTACGTT
CCCTGCAGGAGGGCACATTCGACAGCAAGACCGGTGACTATGCCTGGATA
ATCAGCAACAAACGGCACGCCATGGAGTCGCGACGTCGCTTCTTCCTCGC
AAGCTTTCTAGACCAT
BO08501.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:55:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6712-RA | 1185 | CG6712-PA | 1..1182 | 17..1198 | 5910 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:55:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6712-RA | 1336 | CG6712-RA | 92..1273 | 17..1198 | 5910 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:55:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12095239..12096420 | 1198..17 | 5910 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:55:29 has no hits.
BO08501.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:11:52 Download gff for
BO08501.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6712-RA | 1..1185 | 17..1199 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:32:43 Download gff for
BO08501.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6712-RA | 91..1272 | 17..1198 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:14:13 Download gff for
BO08501.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6712-RA | 92..1273 | 17..1200 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:11:52 Download gff for
BO08501.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6712-RA | 91..1272 | 17..1198 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:28:47 Download gff for
BO08501.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6712-RA | 92..1273 | 17..1200 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:28:47 Download gff for
BO08501.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12095237..12096420 | 17..1200 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:14:13 Download gff for
BO08501.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12095237..12096420 | 17..1200 | 99 | | Minus |
BO08501.pep Sequence
Translation from 16 to 1216
> BO08501.pep
MIKIKRKTAPPPVEQDSDSDSSFDEEEPQDLEVQEGPVTDSSDEEAASSS
KKTAKQGEASEDLKEEDDDDDEEENDDDDEEEDDDDDDDKKTRIPVLNPL
SWMRNKEQRLALYKKMKKEKHKKKMQERRARRKAGVPANPGHTIESLREK
DQTEVANLNDSDNEELQKELQLDDFSSYFERSYEPKVLITFADNPVTKTR
KFGLELSRIFPNALVKIRNKSSVKKICKSAEREEFTDVVIVNEDRRKPNG
LLVIHLPNGPTAHFKLSNVKLTSDIKRDHKEITKHRPEVILNNFTTRLGL
TVGRMLGALFHHDPEFRGRRAVTFHNQRDYIFFRHHRYEFTKEGKRVKLR
ELGPRFTLKLRSLQEGTFDSKTGDYAWIISNKRHAMESRRRFFLASFLDH
BO08501.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:13:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6712-PA | 394 | CG6712-PA | 1..394 | 1..394 | 2050 | 100 | Plus |
| CG11920-PA | 298 | CG11920-PA | 7..287 | 106..396 | 337 | 31.7 | Plus |
