Clone Sequence Records
BO08505.3prime Sequence
896 bp (785 high quality bases) assembled on 2006-01-06
> BO08505.3prime
ATGGTCTAGAAAGCTTGCTTGCGATACAATGGGGCTCTTTTTATCTATGT
CAGATATATTCGCGTTGTTCTGCGGGGCAGCTCCGTTCCCAGGGCTGGCC
GGGATGGCTCCCGCCCGGTCGATGCTCCACGGATTCGAGCCGGATATGGG
CGAGTCGGCGTGTCCAAAGCCGGTGTGATTATCGTGCTCCACGGCATTGG
TTCCGTCGTATTGCGTGTTCTCTAGCCGGGTGATCAGCCGCTCGTCCTCC
TCACCAAACTCGCCGCCCATCAGCGTCGGCTCGCCCACCACCATCACGTC
CTGGGAGGAGAGGGAGAAACTGGGACCGGAGGGGGAACGCTTCTGGTTCG
TCACAGGCGGAGTGTTCGAGTTGTTGCCACCACCCGAGTTGGAGCCCTTC
CGTTTGCGCCTCTTGTTGGGTGGTCGTTGCGGATCCTTCTTGCCGGGCGG
AGCCACCATGCGCTGCCACTTCTGGAACAACGTTGTCTTCAGGCAGTCGC
GCGGACTCAGTGCGTACGCCTTGTGCCGCGACATCAGCTCCTGCATCGGT
TCGAGGATGACGCAGAGGCGCAGATAGTTGAGGGTGGAGTTGGTGATGCC
AGCGCGCGTGATGTTCTTGGTTATTTGATCTAGCAGCATCGGGTCAGGCG
GCAGACTGGTGCCGATCACGGACCTTGGAATGAGCTCGCGGTGTCCCTTG
ATGGTCATGTGCCATGACTTGATGCGCATGTAGTCGTCGTACATGAACTC
CAAGATCAGTCTTGCGTCGGCGCAGACCTTCGTGAAGAAGGGCTTGCCGT
GCTGCGTGATCACCGTGCACTGGTCGCAGTCCAACGTGATGGACGTGTTG
TGGAACGACTCCTTGGCATGCTTCAGCTGAAAGTACAGGTCCGAAA
BO08505.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:25:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3924-PA | 1734 | Chi-RA | 854..1731 | 896..19 | 4390 | 100 | Minus |
| CG3924-PB | 1791 | Chi-RB | 911..1788 | 896..19 | 4390 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:46:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Chi-RB | 2125 | CG3924-RB | 979..1856 | 896..19 | 4390 | 100 | Minus |
| Chi-RA | 2156 | CG3924-RA | 1010..1887 | 896..19 | 4390 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:46:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24031807..24032684 | 19..896 | 4390 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:46:08 has no hits.
BO08505.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:48:52 Download gff for
BO08505.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3924-PB | 914..1791 | 18..893 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:44:16 Download gff for
BO08505.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3924-PB | 914..1791 | 18..893 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:56:19 Download gff for
BO08505.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Chi-RA | 1013..1895 | 11..893 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:00:17 Download gff for
BO08505.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Chi-RA | 1013..1895 | 11..893 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:00:17 Download gff for
BO08505.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24031799..24032681 | 11..893 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:56:19 Download gff for
BO08505.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19919322..19920204 | 11..893 | 99 | | Plus |
BO08505.5prime Sequence
942 bp (891 high quality bases) assembled on 2006-01-06
> BO08505.5prime
GAAGTTATCAGTCGACATGAATCGTAGGGGTTTGAACGCTGGCAATACGA
TGACTTCTCAAGCGAACATTGACGACGGCAGCTGGAAGGCGGTCTCCGAG
GGCGGATCAATGCTGCCCGCGTCCAATTCGGCGGTCCTCAATCCGGACGG
GAGCAACCAGAGCGGCTTCGCGCAGGGCGGCCTGCCGTACAACTCGGCCG
GGAATCCGTACCCGCCCGCCGGCCAATCCTCGCCAGCCGGCAACCAGTCC
ATCGTGTTCCAGAACTCCAACCAGCCTGGCTCGAACACACCTCAGTATAC
CTCCTCACCTGCTCCCTCGGGCTCATCGACACCCGGACCTGTTGGTGCGC
AGAACATTCCCGGCAACTACCCGCAGTCGGCGACGGCGGGCAATTTCAAT
GGTCCAGTTGGCGGGCCCTTCGGCTCGCCATCCTCGGGACTCGGCCAGTT
CAGCCGGCCGGCCAGCTCGGGCACTCCGTTTAACAGTGGCCAGGCCGGGC
ACTTCTCATCGCCCACGGTATTCAGCGTTGGCGGGCAATTCAATCCGATG
CCGCCGGCGTCGCCATTCGGCCACGGAGGCAACCACCCGATGATGGGCGG
GCCGCAGCAGATGGAACGCATCGACCAGGGCTTCAGGCGGCACAATTCCT
ACTTTAGCCACACGGAACACCGCGTCTTTGAGCTAAACAAGCGGCTGCAG
CAGCGCAACGAGGAGAGCGACAACTGCTGGTGGGACTCGTTTACCACGGA
GTTCTTCGAGGATGATGCCCGGCTGACCATTCTGTTCTGCCTGGAGGACG
GACCGAAGCGGTACACCATCGGGCGCACGCTCATCCCGCGCTTCTTCCGC
AGCATATACGAGGGCGGCGTTTCGGACCTGTACTTTCAGCTGAAGCATGC
CAGGGAGTCGTTCCACAACACGTCCATCACGTTGGACTGCGA
BO08505.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:25:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3924-PB | 1791 | Chi-RB | 57..983 | 16..942 | 4610 | 99.8 | Plus |
| CG3924-PA | 1734 | Chi-RA | 1..926 | 17..942 | 4605 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:37:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Chi-RB | 2125 | CG3924-RB | 125..1051 | 16..942 | 4620 | 99.9 | Plus |
| Chi-RA | 2156 | CG3924-RA | 156..1082 | 16..942 | 4620 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:37:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24032612..24033538 | 942..16 | 4620 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 03:37:53 has no hits.
BO08505.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:48:53 Download gff for
BO08505.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3924-PB | 53..982 | 9..941 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:44:17 Download gff for
BO08505.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3924-PB | 53..982 | 9..941 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:45:05 Download gff for
BO08505.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Chi-RA | 152..1081 | 9..941 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:17:55 Download gff for
BO08505.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Chi-RA | 152..1081 | 9..941 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:17:55 Download gff for
BO08505.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24032613..24033542 | 9..941 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:45:05 Download gff for
BO08505.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19920136..19921065 | 9..941 | 99 | | Minus |
BO08505.complete Sequence
1765 bp assembled on 2007-06-21
GenBank Submission: FJ631219
> BO08505.complete
GAAGTTATCAGTCGACATGAATCGTAGGGGTTTGAACGCTGGCAATACGA
TGACTTCTCAAGCGAACATTGACGACGGCAGCTGGAAGGCGGTCTCCGAG
GGCGGATCAATGCTGCCCGCGTCCAATTCGGCGGTCCTCAATCCGGACGG
GAGCAACCAGAGCGGCTTCGCGCAGGGCGGCCTGCCGTACAACTCGGCCG
GGAATCCGTACCCGCCCGCCGGCCAATCCTCGCCAGCCGGCAACCAGTCC
ATCGTGTTCCAGAACTCCAACCAGCCTGGCTCGAACACACCTCAGTATAC
CTCCTCACCTGCTCCCTCGGGCTCATCGACACCCGGACCTGTTGGTGCGC
AGAACATTCCCGGCAACTACCCGCAGTCGGCGACGGCGGGCAATTTCAAT
GGTCCAGTTGGCGGGCCCTTCGGCTCGCCATCCTCGGGACTCGGCCAGTT
CAGCCGGCCGGCCAGCTCGGGCACTCCGTTTAACAGTGGCCAGGCCGGGC
ACTTCTCATCGCCCACGGTATTCAGCGTTGGCGGGCAATTCAATCCGATG
CCGCCGGCGTCGCCATTCGGCCACGGAGGCAACCACCCGATGATGGGCGG
GCCGCAGCAGATGGAACGCATCGACCAGGGCTTCAGGCGGCACAATTCCT
ACTTTAGCCACACGGAACACCGCGTCTTTGAGCTAAACAAGCGGCTGCAG
CAGCGCAACGAGGAGAGCGACAACTGCTGGTGGGACTCGTTTACCACGGA
GTTCTTCGAGGATGATGCCCGGCTGACCATTCTGTTCTGCCTGGAGGACG
GACCGAAGCGGTACACCATCGGGCGCACGCTCATCCCGCGCTTCTTCCGC
AGCATATACGAGGGCGGCGTTTCGGACCTGTACTTTCAGCTGAAGCATGC
CAAGGAGTCGTTCCACAACACGTCCATCACGTTGGACTGCGACCAGTGCA
CGGTGATCACGCAGCACGGCAAGCCCTTCTTCACGAAGGTCTGCGCCGAC
GCAAGACTGATCTTGGAGTTCATGTACGACGACTACATGCGCATCAAGTC
ATGGCACATGACCATCAAGGGACACCGCGAGCTCATTCCAAGGTCCGTGA
TCGGCACCAGTCTGCCGCCTGACCCGATGCTGCTAGATCAAATAACCAAG
AACATCACGCGCGCTGGCATCACCAACTCCACCCTCAACTATCTGCGCCT
CTGCGTCATCCTCGAACCGATGCAGGAGCTGATGTCGCGGCACAAGGCGT
ACGCACTGAGTCCGCGCGACTGCCTGAAGACAACGTTGTTCCAGAAGTGG
CAGCGCATGGTGGCTCCGCCCGGCAAGAAGGATCCGCAACGACCACCCAA
CAAGAGGCGCAAACGGAAGGGCTCCAACTCGGGTGGTGGCAACAACTCGA
ACACTCCGCCTGTGACGAACCAGAAGCGTTCCCCCTCCGGTCCCAGTTTC
TCCCTCTCCTCCCAGGACGTGATGGTGGTGGGCGAGCCGACGCTGATGGG
CGGCGAGTTTGGTGAGGAGGACGAGCGGCTGATCACCCGGCTAGAGAACA
CGCAATACGACGGAACCAATGCCGTGGAGCACGATAATCACACCGGCTTT
GGACACGCCGACTCGCCCATATCCGGCTCGAATCCGTGGAGCATCGACCG
GGCGGGAGCCATCCCGGCCAGCCCTGGGAACGGAGCTGCCCCGCAGAACA
ACGCGAATATATCTGACATAGATAAAAAGAGCCCCATTGTATCGCAAGCA
AGCTTTCTAGACCAT
BO08505.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:57:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Chi-RB | 1791 | CG3924-PB | 57..1788 | 16..1747 | 8660 | 100 | Plus |
| Chi-RA | 1734 | CG3924-PA | 1..1731 | 17..1747 | 8655 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:57:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Chi-RB | 2125 | CG3924-RB | 125..1856 | 16..1747 | 8660 | 100 | Plus |
| Chi-RA | 2156 | CG3924-RA | 156..1887 | 16..1747 | 8660 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:57:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24031807..24033538 | 1747..16 | 8660 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:57:09 has no hits.
BO08505.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:08:46 Download gff for
BO08505.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Chi-RB | 53..1791 | 9..1748 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:25:36 Download gff for
BO08505.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Chi-RB | 121..1864 | 9..1755 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:54:33 Download gff for
BO08505.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Chi-RA | 157..1887 | 17..1749 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:08:46 Download gff for
BO08505.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Chi-RB | 121..1864 | 9..1755 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:07:58 Download gff for
BO08505.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Chi-RA | 157..1887 | 17..1749 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:07:58 Download gff for
BO08505.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24031805..24033537 | 17..1749 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:54:33 Download gff for
BO08505.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19919328..19921060 | 17..1749 | 99 | | Minus |
BO08505.pep Sequence
Translation from 16 to 1765
> BO08505.pep
MNRRGLNAGNTMTSQANIDDGSWKAVSEGGSMLPASNSAVLNPDGSNQSG
FAQGGLPYNSAGNPYPPAGQSSPAGNQSIVFQNSNQPGSNTPQYTSSPAP
SGSSTPGPVGAQNIPGNYPQSATAGNFNGPVGGPFGSPSSGLGQFSRPAS
SGTPFNSGQAGHFSSPTVFSVGGQFNPMPPASPFGHGGNHPMMGGPQQME
RIDQGFRRHNSYFSHTEHRVFELNKRLQQRNEESDNCWWDSFTTEFFEDD
ARLTILFCLEDGPKRYTIGRTLIPRFFRSIYEGGVSDLYFQLKHAKESFH
NTSITLDCDQCTVITQHGKPFFTKVCADARLILEFMYDDYMRIKSWHMTI
KGHRELIPRSVIGTSLPPDPMLLDQITKNITRAGITNSTLNYLRLCVILE
PMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKKDPQRPPNKRRKR
KGSNSGGGNNSNTPPVTNQKRSPSGPSFSLSSQDVMVVGEPTLMGGEFGE
EDERLITRLENTQYDGTNAVEHDNHTGFGHADSPISGSNPWSIDRAGAIP
ASPGNGAAPQNNANISDIDKKSPIVSQASFLDH
BO08505.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:40:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Chi-PB | 596 | CG3924-PB | 20..596 | 1..577 | 3109 | 100 | Plus |
| Chi-PA | 577 | CG3924-PA | 1..577 | 1..577 | 3109 | 100 | Plus |
