Clone Sequence Records
BO08509.3prime Sequence
951 bp (822 high quality bases) assembled on 2006-01-06
> BO08509.3prime
ATGGTCTAGAAAGCTTGCATGCCGGGAACGGTGCTCCTCACGCCTGTCGC
GATCACGCTCCCGCTCGCGGTCGCGGTCTCGATCGCGGTCGCGTCGCTCA
CGGTCCGAGGAGCGGTACCTTTCCCGATCCTCGTAGTAGCGCTTCGATGA
TGGCGCCTCCGCTGCTTCGGCGACTACGGGTTCCGGCGACTTTCGTGGAC
GCACCGATCGGCTGTCATCCCTGTAGTGATCTGGAGCCTGGCGTTCACGT
TCTCTACTGCGAGACCTCTCTCTGTAGCTTCCGCCATCCCGTTCACGCTC
ACGATCCCGATCGCGTTCCCGCTCCCGAGATCGCTCGCGGTACCTGGACG
TGGAACGCTCACGTCGCTGTCGGCTGCGATGAGATCGCTCCCTCGACCGC
GACCTTTCGCGCCTATTGTAGCTCTTGGCCTCGATGCCATGCAACGTGTC
CTGCAGCGAGCTAATCAGAATTTTGCATCGCTCATCGTGCGCTACCTTGG
ACTGTTTGATCAGTGAAATGGCTGTGACCAGTGTCTCGATGGCGCTCGAG
TATTCACCAGCGGCTGCATCAGAAACAGCTCTGGCGATCGCCGAACTGCT
GACTGTGCGATTTCTGCTCATCACCTCCTCGAACTCCACCTCCGTCAGTT
GCGGACCCATCTGCTGCGGATCGGGGAAGGGACCTGGTGGCTTACCCTGC
GGTGGCGGCCACGGACCACGTGGTCCATGCTGGGCGAACTGGGGTGGCGG
TCCATGCTGTGGCGTCATGTTCATGCCCTGTTGCGGTGGCATATTCATGC
CTGGCTGTGGACCTGGTGCTCCGTGGGGCGGGCCACCCATGCCCGGATGC
TGGGCAGGACCACCAGGCTGGTTAAAGAATGCTGGGGTCACGTGGGGTGC
GGGTGCGCCGTGTGGTCCGCCCGGAACTGGTGCTGGGGGAAGGCCACGTG
G
BO08509.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:25:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7185-PA | 1959 | CG7185-RA | 1024..1956 | 951..19 | 4615 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:40:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7185-RB | 2721 | CG7185-RB | 1248..2180 | 951..19 | 4635 | 99.8 | Minus |
CG7185-RA | 2862 | CG7185-RA | 1389..2321 | 951..19 | 4635 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:40:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8312284..8312654 | 581..951 | 1825 | 99.5 | Plus |
3L | 28110227 | 3L | 8311774..8312076 | 281..583 | 1515 | 100 | Plus |
3L | 28110227 | 3L | 8311034..8311230 | 19..215 | 985 | 100 | Plus |
3L | 28110227 | 3L | 8311647..8311716 | 212..281 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 17:40:36 has no hits.
BO08509.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:48:58 Download gff for
BO08509.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7185-PA | 1024..1959 | 16..951 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:44:24 Download gff for
BO08509.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7185-PA | 1024..1959 | 16..951 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:43:38 Download gff for
BO08509.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7185-RA | 1389..2326 | 12..951 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:55:07 Download gff for
BO08509.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7185-RA | 1389..2326 | 12..951 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:55:07 Download gff for
BO08509.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8311029..8311226 | 12..211 | 98 | <- | Plus |
3L | 8311647..8311715 | 212..280 | 100 | <- | Plus |
3L | 8311774..8312073 | 281..580 | 100 | <- | Plus |
3L | 8312284..8312654 | 581..951 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:43:38 Download gff for
BO08509.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8304129..8304326 | 12..211 | 98 | <- | Plus |
arm_3L | 8304747..8304815 | 212..280 | 100 | <- | Plus |
arm_3L | 8304874..8305173 | 281..580 | 100 | <- | Plus |
arm_3L | 8305384..8305754 | 581..951 | 99 | | Plus |
BO08509.5prime Sequence
815 bp (814 high quality bases) assembled on 2006-01-06
> BO08509.5prime
GAAGTTATCAGTCGACATGGCCGACGTGGTCTTGGATCTGTACGCGGAGG
ACCTCGACAAGGACTTTGCCGGGCAGGCTCAGGACGAATTTGGAGGCGAT
GGAGTAGACCTATACGATGACATAGGCGGTCCCACCGAATCGGCCGCCTC
AGGTGGCGGGGGCGGTGGAACGCCCTCCGCAGATGGAGCCGCAGGGCCAG
GCTCCGGGGAACCCGGCGAACGGAATTCCGGTGGTCCCAATGGGGTGTAC
CATCAGAGCAGTGGTAGCCTCACTCCGACCATGAATCGCCGCTACCAGCT
TTATGTGGGCAATCTCACATGGTGGACCACTGACCAGGATATCGCCAATT
CGCTGCGAGACATTGGCGTGAGTGATCTACAGGAAGTGAAGTTTTTTGAG
AACAGGGCCAACGGTCAGTCGAAGGGCTTCAGTGTAATCTCCCTCGGCTC
AGAATCTAGCCTGCGCGCCGTGCTCGACCAGCTGCCCAAGAAGGAGATGC
ACGGCCAAGCGCCGGTGGTCACGTATCCCAGCAAGCAGGCACTCACCCAA
TTCGAGAGTCTGCAAAAGACGCGTCCAGTGCCGCCGCCGCAGCAGAATGG
ACCGCCCAGGGGTCCGGCACCACCCAGTATGGGTGGCGGGCCAATGCCCA
CCGGACATCCAGGAGGACCGCAAGGAGGTGGACCACCGGGACATCCACCG
CGCGGGATGAACTCCATCATGCAGCCGGGCCAGTACCGACCGCAGCACAT
GTCGCAGGTTCCCCAGGTGGGCGGACCCAACTCAGGACCTCCACGAATGC
AGCCGCCAATGCATC
BO08509.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:25:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7185-PA | 1959 | CG7185-RA | 1..799 | 17..815 | 3995 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:47:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7185-RA | 2862 | CG7185-RA | 364..1164 | 15..815 | 4005 | 100 | Plus |
CG7185-RB | 2721 | CG7185-RB | 364..1151 | 15..802 | 3940 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:47:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8313957..8314679 | 802..80 | 3615 | 100 | Minus |
3L | 28110227 | 3L | 8315071..8315139 | 83..15 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:47:56 has no hits.
BO08509.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:48:59 Download gff for
BO08509.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7185-PA | 1..799 | 17..815 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:44:25 Download gff for
BO08509.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7185-PA | 1..799 | 17..815 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:59:14 Download gff for
BO08509.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7185-RA | 361..1164 | 12..815 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:50:27 Download gff for
BO08509.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7185-RA | 361..1164 | 12..815 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:50:27 Download gff for
BO08509.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8313957..8314676 | 83..802 | 100 | <- | Minus |
3L | 8315072..8315142 | 12..82 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:59:14 Download gff for
BO08509.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8307057..8307776 | 83..802 | 100 | <- | Minus |
arm_3L | 8308172..8308242 | 12..82 | 98 | | Minus |
BO08509.complete Sequence
1990 bp assembled on 2008-08-15
GenBank Submission: FJ631221
> BO08509.complete
GAAGTTATCAGTCGACATGGCCGACGTGGTCTTGGATCTGTACGCGGAGG
ACCTCGACAAGGACTTTGCCGGGCAGGCTCAGGACGAATTTGGAGGCGAT
GGAGTAGACCTATACGATGACATAGGCGGTCCCACCGAATCGGCCGCCTC
AGGTGGCGGGGGCGGTGGAACGCCCTCCGCAGATGGAGCCGCAGGGCCAG
GCTCCGGGGAACCCGGCGAACGGAATTCCGGTGGTCCCAATGGGGTGTAC
CATCAGAGCAGTGGTAGCCTCACTCCGACCATGAATCGCCGCTACCAGCT
TTATGTGGGCAATCTCACATGGTGGACCACTGACCAGGATATCGCCAATT
CGCTGCGAGACATTGGCGTGAGTGATCTACAGGAAGTGAAGTTTTTTGAG
AACAGGGCCAACGGTCAGTCGAAGGGCTTCAGTGTAATCTCCCTCGGCTC
AGAATCTAGCCTGCGCGCCGTGCTCGACCAGCTGCCCAAGAAGGAGATGC
ACGGCCAAGCGCCGGTGGTCACGTATCCCAGCAAGCAGGCACTCACCCAA
TTCGAGAGTCTGCAAAAGACGCGTCCAGTGCCGCCGCCGCAGCAGAATGG
ACCGCCCAGGGGTCCGGCACCACCCAGTATGGGTGGCGGGCCAATGCCCA
CCGGACATCCAGGAGGACCGCAAGGAGGTGGACCACCGGGACATCCACCG
CGCGGGATGAACTCCATCATGCAGCCGGGCCAGTACCGACCGCAGCACAT
GTCGCAGGTTCCCCAGGTGGGCGGACCCAACTCAGGACCTCCACGAATGC
AGCCGCCAATGCATCCGCAAGGCGGGCTCATGGGGAACCAACAGCCGCCA
CCCCGGTATCCGTCAGCGCAGGGCCAATGGCCAGGTCAGCGGCCAGGCGG
GCCGCGACCAGGTCCACCGAACGGACCACCGCAGCGACCAATGTTCCAAG
GAGGCCCAATGGGCATGCCCGTCAGGGGTCCGGCAGGTCCCGACTGGCGT
CGTCCACCCATGCACGGTGGTTTCCCGCCGCAAGGTCCGCCACGTGGCCT
TCCCCCAGCACCAGGTCCGGGCGGACCACACGGCGCACCCGCACCCCACG
TGAACCCAGCATTCTTTAACCAGCCTGGTGGTCCTGCCCAGCATCCGGGC
ATGGGTGGCCCGCCCCACGGAGCACCAGGTCCACAGCCAGGCATGAATAT
GCCACCGCAACAGGGCATGAACATGACGCCACAGCATGGACCGCCACCCC
AGTTCGCCCAGCATGGACCACGTGGTCCGTGGCCGCCACCGCAGGGTAAG
CCACCAGGTCCCTTCCCCGATCCGCAGCAGATGGGTCCGCAACTGACGGA
GGTGGAGTTCGAGGAGGTGATGAGCAGAAATCGCACAGTCAGCAGTTCGG
CGATCGCCAGAGCTGTTTCTGATGCAGCCGCTGGTGAATACTCGAGCGCC
ATCGAGACACTGGTCACAGCCATTTCACTGATCAAACAGTCCAAGGTAGC
GCACGATGAGCGATGCAAAATTCTGATTAGCTCGCTGCAGGACACGTTGC
ATGGCATCGAGGCCAAGAGCTACAATAGGCGCGAAAGGTCGCGGTCGAGG
GAGCGATCTCATCGCAGCCGACAGCGACGTGAGCGTTCCACGTCCAGGTA
CCGCGAGCGATCTCGGGAGCGGGAACGCGATCGGGATCGTGAGCGTGAAC
GGGATGGCGGAAGCTACAGAGAGAGGTCTCGCAGTAGAGAACGTGAACGC
CAGGCTCCAGATCACTACAGGGATGACAGCCGATCGGTGCGTCCACGAAA
GTCGCCGGAACCCGTAGTCGCCGAAGCAGCGGAGGCGCCATCATCGAAGC
GCTACTACGAGGATCGGGAAAGGTACCGCTCCTCGGACCGTGAGCGACGC
GACCGCGATCGAGACCGCGACCGCGAGCGGGAGCGTGATCGCGACAGGCG
TGAGGAGCACCGTTCCCGGCATGCAAGCTTTCTAGACCAT
BO08509.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:18:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7185-RA | 1959 | CG7185-PA | 1..1956 | 17..1972 | 9780 | 100 | Plus |
CG7185-RB | 1818 | CG7185-PB | 786..1815 | 943..1972 | 5150 | 100 | Plus |
CG7185-RB | 1818 | CG7185-PB | 1..786 | 17..802 | 3930 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:18:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7185-RA | 2862 | CG7185-RA | 364..2321 | 15..1972 | 9790 | 100 | Plus |
CG7185-RB | 2721 | CG7185-RB | 1151..2180 | 943..1972 | 5150 | 100 | Plus |
CG7185-RB | 2721 | CG7185-RB | 364..1151 | 15..802 | 3940 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:18:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8313957..8314679 | 802..80 | 3615 | 100 | Minus |
3L | 28110227 | 3L | 8312284..8312751 | 1410..943 | 2340 | 100 | Minus |
3L | 28110227 | 3L | 8311774..8312076 | 1710..1408 | 1515 | 100 | Minus |
3L | 28110227 | 3L | 8311034..8311230 | 1972..1776 | 985 | 100 | Minus |
3L | 28110227 | 3L | 8313011..8313153 | 943..801 | 715 | 100 | Minus |
3L | 28110227 | 3L | 8311647..8311716 | 1779..1710 | 350 | 100 | Minus |
3L | 28110227 | 3L | 8315071..8315139 | 83..15 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:18:42 has no hits.
BO08509.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:56:17 Download gff for
BO08509.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7185-RA | 346..2311 | 12..1979 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:30:26 Download gff for
BO08509.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7185-RA | 366..2321 | 17..1974 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:00:31 Download gff for
BO08509.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7185-RA | 351..2306 | 17..1974 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:15:33 Download gff for
BO08509.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7185-RA | 366..2321 | 17..1974 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:15:33 Download gff for
BO08509.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8311030..8311226 | 1780..1974 | 98 | <- | Minus |
3L | 8311647..8311715 | 1711..1779 | 100 | <- | Minus |
3L | 8311774..8312073 | 1411..1710 | 100 | <- | Minus |
3L | 8312284..8312750 | 944..1410 | 100 | <- | Minus |
3L | 8313011..8313151 | 803..943 | 100 | <- | Minus |
3L | 8313957..8314676 | 83..802 | 100 | <- | Minus |
3L | 8315072..8315137 | 17..82 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:30:26 Download gff for
BO08509.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8304130..8304326 | 1780..1974 | 98 | <- | Minus |
arm_3L | 8304747..8304815 | 1711..1779 | 100 | <- | Minus |
arm_3L | 8304874..8305173 | 1411..1710 | 100 | <- | Minus |
arm_3L | 8305384..8305850 | 944..1410 | 100 | <- | Minus |
arm_3L | 8306111..8306251 | 803..943 | 100 | <- | Minus |
arm_3L | 8307057..8307776 | 83..802 | 100 | <- | Minus |
arm_3L | 8308172..8308237 | 17..82 | 100 | | Minus |
BO08509.pep Sequence
Translation from 16 to 1990
> BO08509.pep
MADVVLDLYAEDLDKDFAGQAQDEFGGDGVDLYDDIGGPTESAASGGGGG
GTPSADGAAGPGSGEPGERNSGGPNGVYHQSSGSLTPTMNRRYQLYVGNL
TWWTTDQDIANSLRDIGVSDLQEVKFFENRANGQSKGFSVISLGSESSLR
AVLDQLPKKEMHGQAPVVTYPSKQALTQFESLQKTRPVPPPQQNGPPRGP
APPSMGGGPMPTGHPGGPQGGGPPGHPPRGMNSIMQPGQYRPQHMSQVPQ
VGGPNSGPPRMQPPMHPQGGLMGNQQPPPRYPSAQGQWPGQRPGGPRPGP
PNGPPQRPMFQGGPMGMPVRGPAGPDWRRPPMHGGFPPQGPPRGLPPAPG
PGGPHGAPAPHVNPAFFNQPGGPAQHPGMGGPPHGAPGPQPGMNMPPQQG
MNMTPQHGPPPQFAQHGPRGPWPPPQGKPPGPFPDPQQMGPQLTEVEFEE
VMSRNRTVSSSAIARAVSDAAAGEYSSAIETLVTAISLIKQSKVAHDERC
KILISSLQDTLHGIEAKSYNRRERSRSRERSHRSRQRRERSTSRYRERSR
ERERDRDRERERDGGSYRERSRSRERERQAPDHYRDDSRSVRPRKSPEPV
VAEAAEAPSSKRYYEDRERYRSSDRERRDRDRDRDRERERDRDRREEHRS
RHASFLDH
BO08509.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:33:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7185-PA | 652 | CG7185-PA | 1..652 | 1..652 | 3574 | 100 | Plus |
CG7185-PB | 605 | CG7185-PB | 1..605 | 1..652 | 3043 | 89.1 | Plus |
CG15021-PA | 420 | CG15021-PA | 112..389 | 187..448 | 274 | 34.1 | Plus |
pygo-PA | 815 | CG11518-PA | 346..740 | 32..442 | 274 | 30 | Plus |
CG5514-PC | 1109 | CG5514-PC | 352..731 | 258..654 | 273 | 25.4 | Plus |
CG15021-PA | 420 | CG15021-PA | 183..418 | 171..433 | 251 | 34.4 | Plus |
CG15021-PA | 420 | CG15021-PA | 11..335 | 140..441 | 250 | 29.1 | Plus |
pygo-PA | 815 | CG11518-PA | 122..369 | 205..436 | 240 | 34.1 | Plus |
pygo-PA | 815 | CG11518-PA | 153..444 | 189..418 | 218 | 31.8 | Plus |
pygo-PA | 815 | CG11518-PA | 327..627 | 183..440 | 217 | 30.1 | Plus |
CG15021-PA | 420 | CG15021-PA | 42..236 | 227..444 | 216 | 33 | Plus |
pygo-PA | 815 | CG11518-PA | 103..280 | 249..441 | 174 | 32.8 | Plus |