Clone BO08509 Report

Search the DGRC for BO08509

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:85
Well:9
Vector:pDNR-Dual
Associated Gene/TranscriptCG7185-RA
Protein status:BO08509.pep: Imported from assembly
Sequenced Size:1990

Clone Sequence Records

BO08509.3prime Sequence

951 bp (822 high quality bases) assembled on 2006-01-06

> BO08509.3prime
ATGGTCTAGAAAGCTTGCATGCCGGGAACGGTGCTCCTCACGCCTGTCGC
GATCACGCTCCCGCTCGCGGTCGCGGTCTCGATCGCGGTCGCGTCGCTCA
CGGTCCGAGGAGCGGTACCTTTCCCGATCCTCGTAGTAGCGCTTCGATGA
TGGCGCCTCCGCTGCTTCGGCGACTACGGGTTCCGGCGACTTTCGTGGAC
GCACCGATCGGCTGTCATCCCTGTAGTGATCTGGAGCCTGGCGTTCACGT
TCTCTACTGCGAGACCTCTCTCTGTAGCTTCCGCCATCCCGTTCACGCTC
ACGATCCCGATCGCGTTCCCGCTCCCGAGATCGCTCGCGGTACCTGGACG
TGGAACGCTCACGTCGCTGTCGGCTGCGATGAGATCGCTCCCTCGACCGC
GACCTTTCGCGCCTATTGTAGCTCTTGGCCTCGATGCCATGCAACGTGTC
CTGCAGCGAGCTAATCAGAATTTTGCATCGCTCATCGTGCGCTACCTTGG
ACTGTTTGATCAGTGAAATGGCTGTGACCAGTGTCTCGATGGCGCTCGAG
TATTCACCAGCGGCTGCATCAGAAACAGCTCTGGCGATCGCCGAACTGCT
GACTGTGCGATTTCTGCTCATCACCTCCTCGAACTCCACCTCCGTCAGTT
GCGGACCCATCTGCTGCGGATCGGGGAAGGGACCTGGTGGCTTACCCTGC
GGTGGCGGCCACGGACCACGTGGTCCATGCTGGGCGAACTGGGGTGGCGG
TCCATGCTGTGGCGTCATGTTCATGCCCTGTTGCGGTGGCATATTCATGC
CTGGCTGTGGACCTGGTGCTCCGTGGGGCGGGCCACCCATGCCCGGATGC
TGGGCAGGACCACCAGGCTGGTTAAAGAATGCTGGGGTCACGTGGGGTGC
GGGTGCGCCGTGTGGTCCGCCCGGAACTGGTGCTGGGGGAAGGCCACGTG
G

BO08509.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:25:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG7185-PA 1959 CG7185-RA 1024..1956 951..19 4615 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:40:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG7185-RB 2721 CG7185-RB 1248..2180 951..19 4635 99.8 Minus
CG7185-RA 2862 CG7185-RA 1389..2321 951..19 4635 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:40:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8312284..8312654 581..951 1825 99.5 Plus
3L 28110227 3L 8311774..8312076 281..583 1515 100 Plus
3L 28110227 3L 8311034..8311230 19..215 985 100 Plus
3L 28110227 3L 8311647..8311716 212..281 350 100 Plus
Blast to na_te.dros performed on 2015-02-02 17:40:36 has no hits.

BO08509.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:48:58 Download gff for BO08509.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7185-PA 1024..1959 16..951 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:44:24 Download gff for BO08509.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7185-PA 1024..1959 16..951 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:43:38 Download gff for BO08509.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7185-RA 1389..2326 12..951 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:55:07 Download gff for BO08509.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7185-RA 1389..2326 12..951 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:55:07 Download gff for BO08509.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 8311029..8311226 12..211 98 <- Plus
3L 8311647..8311715 212..280 100 <- Plus
3L 8311774..8312073 281..580 100 <- Plus
3L 8312284..8312654 581..951 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:43:38 Download gff for BO08509.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8304129..8304326 12..211 98 <- Plus
arm_3L 8304747..8304815 212..280 100 <- Plus
arm_3L 8304874..8305173 281..580 100 <- Plus
arm_3L 8305384..8305754 581..951 99   Plus

BO08509.5prime Sequence

815 bp (814 high quality bases) assembled on 2006-01-06

> BO08509.5prime
GAAGTTATCAGTCGACATGGCCGACGTGGTCTTGGATCTGTACGCGGAGG
ACCTCGACAAGGACTTTGCCGGGCAGGCTCAGGACGAATTTGGAGGCGAT
GGAGTAGACCTATACGATGACATAGGCGGTCCCACCGAATCGGCCGCCTC
AGGTGGCGGGGGCGGTGGAACGCCCTCCGCAGATGGAGCCGCAGGGCCAG
GCTCCGGGGAACCCGGCGAACGGAATTCCGGTGGTCCCAATGGGGTGTAC
CATCAGAGCAGTGGTAGCCTCACTCCGACCATGAATCGCCGCTACCAGCT
TTATGTGGGCAATCTCACATGGTGGACCACTGACCAGGATATCGCCAATT
CGCTGCGAGACATTGGCGTGAGTGATCTACAGGAAGTGAAGTTTTTTGAG
AACAGGGCCAACGGTCAGTCGAAGGGCTTCAGTGTAATCTCCCTCGGCTC
AGAATCTAGCCTGCGCGCCGTGCTCGACCAGCTGCCCAAGAAGGAGATGC
ACGGCCAAGCGCCGGTGGTCACGTATCCCAGCAAGCAGGCACTCACCCAA
TTCGAGAGTCTGCAAAAGACGCGTCCAGTGCCGCCGCCGCAGCAGAATGG
ACCGCCCAGGGGTCCGGCACCACCCAGTATGGGTGGCGGGCCAATGCCCA
CCGGACATCCAGGAGGACCGCAAGGAGGTGGACCACCGGGACATCCACCG
CGCGGGATGAACTCCATCATGCAGCCGGGCCAGTACCGACCGCAGCACAT
GTCGCAGGTTCCCCAGGTGGGCGGACCCAACTCAGGACCTCCACGAATGC
AGCCGCCAATGCATC

BO08509.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:25:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG7185-PA 1959 CG7185-RA 1..799 17..815 3995 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:47:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG7185-RA 2862 CG7185-RA 364..1164 15..815 4005 100 Plus
CG7185-RB 2721 CG7185-RB 364..1151 15..802 3940 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:47:53
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8313957..8314679 802..80 3615 100 Minus
3L 28110227 3L 8315071..8315139 83..15 345 100 Minus
Blast to na_te.dros performed on 2015-02-12 05:47:56 has no hits.

BO08509.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:48:59 Download gff for BO08509.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7185-PA 1..799 17..815 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:44:25 Download gff for BO08509.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7185-PA 1..799 17..815 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:59:14 Download gff for BO08509.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7185-RA 361..1164 12..815 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:50:27 Download gff for BO08509.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7185-RA 361..1164 12..815 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:50:27 Download gff for BO08509.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 8313957..8314676 83..802 100 <- Minus
3L 8315072..8315142 12..82 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:59:14 Download gff for BO08509.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8307057..8307776 83..802 100 <- Minus
arm_3L 8308172..8308242 12..82 98   Minus

BO08509.complete Sequence

1990 bp assembled on 2008-08-15

GenBank Submission: FJ631221

> BO08509.complete
GAAGTTATCAGTCGACATGGCCGACGTGGTCTTGGATCTGTACGCGGAGG
ACCTCGACAAGGACTTTGCCGGGCAGGCTCAGGACGAATTTGGAGGCGAT
GGAGTAGACCTATACGATGACATAGGCGGTCCCACCGAATCGGCCGCCTC
AGGTGGCGGGGGCGGTGGAACGCCCTCCGCAGATGGAGCCGCAGGGCCAG
GCTCCGGGGAACCCGGCGAACGGAATTCCGGTGGTCCCAATGGGGTGTAC
CATCAGAGCAGTGGTAGCCTCACTCCGACCATGAATCGCCGCTACCAGCT
TTATGTGGGCAATCTCACATGGTGGACCACTGACCAGGATATCGCCAATT
CGCTGCGAGACATTGGCGTGAGTGATCTACAGGAAGTGAAGTTTTTTGAG
AACAGGGCCAACGGTCAGTCGAAGGGCTTCAGTGTAATCTCCCTCGGCTC
AGAATCTAGCCTGCGCGCCGTGCTCGACCAGCTGCCCAAGAAGGAGATGC
ACGGCCAAGCGCCGGTGGTCACGTATCCCAGCAAGCAGGCACTCACCCAA
TTCGAGAGTCTGCAAAAGACGCGTCCAGTGCCGCCGCCGCAGCAGAATGG
ACCGCCCAGGGGTCCGGCACCACCCAGTATGGGTGGCGGGCCAATGCCCA
CCGGACATCCAGGAGGACCGCAAGGAGGTGGACCACCGGGACATCCACCG
CGCGGGATGAACTCCATCATGCAGCCGGGCCAGTACCGACCGCAGCACAT
GTCGCAGGTTCCCCAGGTGGGCGGACCCAACTCAGGACCTCCACGAATGC
AGCCGCCAATGCATCCGCAAGGCGGGCTCATGGGGAACCAACAGCCGCCA
CCCCGGTATCCGTCAGCGCAGGGCCAATGGCCAGGTCAGCGGCCAGGCGG
GCCGCGACCAGGTCCACCGAACGGACCACCGCAGCGACCAATGTTCCAAG
GAGGCCCAATGGGCATGCCCGTCAGGGGTCCGGCAGGTCCCGACTGGCGT
CGTCCACCCATGCACGGTGGTTTCCCGCCGCAAGGTCCGCCACGTGGCCT
TCCCCCAGCACCAGGTCCGGGCGGACCACACGGCGCACCCGCACCCCACG
TGAACCCAGCATTCTTTAACCAGCCTGGTGGTCCTGCCCAGCATCCGGGC
ATGGGTGGCCCGCCCCACGGAGCACCAGGTCCACAGCCAGGCATGAATAT
GCCACCGCAACAGGGCATGAACATGACGCCACAGCATGGACCGCCACCCC
AGTTCGCCCAGCATGGACCACGTGGTCCGTGGCCGCCACCGCAGGGTAAG
CCACCAGGTCCCTTCCCCGATCCGCAGCAGATGGGTCCGCAACTGACGGA
GGTGGAGTTCGAGGAGGTGATGAGCAGAAATCGCACAGTCAGCAGTTCGG
CGATCGCCAGAGCTGTTTCTGATGCAGCCGCTGGTGAATACTCGAGCGCC
ATCGAGACACTGGTCACAGCCATTTCACTGATCAAACAGTCCAAGGTAGC
GCACGATGAGCGATGCAAAATTCTGATTAGCTCGCTGCAGGACACGTTGC
ATGGCATCGAGGCCAAGAGCTACAATAGGCGCGAAAGGTCGCGGTCGAGG
GAGCGATCTCATCGCAGCCGACAGCGACGTGAGCGTTCCACGTCCAGGTA
CCGCGAGCGATCTCGGGAGCGGGAACGCGATCGGGATCGTGAGCGTGAAC
GGGATGGCGGAAGCTACAGAGAGAGGTCTCGCAGTAGAGAACGTGAACGC
CAGGCTCCAGATCACTACAGGGATGACAGCCGATCGGTGCGTCCACGAAA
GTCGCCGGAACCCGTAGTCGCCGAAGCAGCGGAGGCGCCATCATCGAAGC
GCTACTACGAGGATCGGGAAAGGTACCGCTCCTCGGACCGTGAGCGACGC
GACCGCGATCGAGACCGCGACCGCGAGCGGGAGCGTGATCGCGACAGGCG
TGAGGAGCACCGTTCCCGGCATGCAAGCTTTCTAGACCAT

BO08509.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:18:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG7185-RA 1959 CG7185-PA 1..1956 17..1972 9780 100 Plus
CG7185-RB 1818 CG7185-PB 786..1815 943..1972 5150 100 Plus
CG7185-RB 1818 CG7185-PB 1..786 17..802 3930 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:18:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG7185-RA 2862 CG7185-RA 364..2321 15..1972 9790 100 Plus
CG7185-RB 2721 CG7185-RB 1151..2180 943..1972 5150 100 Plus
CG7185-RB 2721 CG7185-RB 364..1151 15..802 3940 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:18:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8313957..8314679 802..80 3615 100 Minus
3L 28110227 3L 8312284..8312751 1410..943 2340 100 Minus
3L 28110227 3L 8311774..8312076 1710..1408 1515 100 Minus
3L 28110227 3L 8311034..8311230 1972..1776 985 100 Minus
3L 28110227 3L 8313011..8313153 943..801 715 100 Minus
3L 28110227 3L 8311647..8311716 1779..1710 350 100 Minus
3L 28110227 3L 8315071..8315139 83..15 345 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:18:42 has no hits.

BO08509.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:56:17 Download gff for BO08509.complete
Subject Subject Range Query Range Percent Splice Strand
CG7185-RA 346..2311 12..1979 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:30:26 Download gff for BO08509.complete
Subject Subject Range Query Range Percent Splice Strand
CG7185-RA 366..2321 17..1974 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:00:31 Download gff for BO08509.complete
Subject Subject Range Query Range Percent Splice Strand
CG7185-RA 351..2306 17..1974 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:15:33 Download gff for BO08509.complete
Subject Subject Range Query Range Percent Splice Strand
CG7185-RA 366..2321 17..1974 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:15:33 Download gff for BO08509.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8311030..8311226 1780..1974 98 <- Minus
3L 8311647..8311715 1711..1779 100 <- Minus
3L 8311774..8312073 1411..1710 100 <- Minus
3L 8312284..8312750 944..1410 100 <- Minus
3L 8313011..8313151 803..943 100 <- Minus
3L 8313957..8314676 83..802 100 <- Minus
3L 8315072..8315137 17..82 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:30:26 Download gff for BO08509.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8304130..8304326 1780..1974 98 <- Minus
arm_3L 8304747..8304815 1711..1779 100 <- Minus
arm_3L 8304874..8305173 1411..1710 100 <- Minus
arm_3L 8305384..8305850 944..1410 100 <- Minus
arm_3L 8306111..8306251 803..943 100 <- Minus
arm_3L 8307057..8307776 83..802 100 <- Minus
arm_3L 8308172..8308237 17..82 100   Minus

BO08509.pep Sequence

Translation from 16 to 1990

> BO08509.pep
MADVVLDLYAEDLDKDFAGQAQDEFGGDGVDLYDDIGGPTESAASGGGGG
GTPSADGAAGPGSGEPGERNSGGPNGVYHQSSGSLTPTMNRRYQLYVGNL
TWWTTDQDIANSLRDIGVSDLQEVKFFENRANGQSKGFSVISLGSESSLR
AVLDQLPKKEMHGQAPVVTYPSKQALTQFESLQKTRPVPPPQQNGPPRGP
APPSMGGGPMPTGHPGGPQGGGPPGHPPRGMNSIMQPGQYRPQHMSQVPQ
VGGPNSGPPRMQPPMHPQGGLMGNQQPPPRYPSAQGQWPGQRPGGPRPGP
PNGPPQRPMFQGGPMGMPVRGPAGPDWRRPPMHGGFPPQGPPRGLPPAPG
PGGPHGAPAPHVNPAFFNQPGGPAQHPGMGGPPHGAPGPQPGMNMPPQQG
MNMTPQHGPPPQFAQHGPRGPWPPPQGKPPGPFPDPQQMGPQLTEVEFEE
VMSRNRTVSSSAIARAVSDAAAGEYSSAIETLVTAISLIKQSKVAHDERC
KILISSLQDTLHGIEAKSYNRRERSRSRERSHRSRQRRERSTSRYRERSR
ERERDRDRERERDGGSYRERSRSRERERQAPDHYRDDSRSVRPRKSPEPV
VAEAAEAPSSKRYYEDRERYRSSDRERRDRDRDRDRERERDRDRREEHRS
RHASFLDH

BO08509.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:33:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG7185-PA 652 CG7185-PA 1..652 1..652 3574 100 Plus
CG7185-PB 605 CG7185-PB 1..605 1..652 3043 89.1 Plus
CG15021-PA 420 CG15021-PA 112..389 187..448 274 34.1 Plus
pygo-PA 815 CG11518-PA 346..740 32..442 274 30 Plus
CG5514-PC 1109 CG5514-PC 352..731 258..654 273 25.4 Plus
CG15021-PA 420 CG15021-PA 183..418 171..433 251 34.4 Plus
CG15021-PA 420 CG15021-PA 11..335 140..441 250 29.1 Plus
pygo-PA 815 CG11518-PA 122..369 205..436 240 34.1 Plus
pygo-PA 815 CG11518-PA 153..444 189..418 218 31.8 Plus
pygo-PA 815 CG11518-PA 327..627 183..440 217 30.1 Plus
CG15021-PA 420 CG15021-PA 42..236 227..444 216 33 Plus
pygo-PA 815 CG11518-PA 103..280 249..441 174 32.8 Plus