Clone Sequence Records
BO08510.3prime Sequence
903 bp (826 high quality bases) assembled on 2006-01-06
> BO08510.3prime
ATGGTCTAGAAAGCTTGCCTCTTCGATGGTGCAGAGCGTGGGCCGCGGGC
GGTTGGCAAGTCCTGTAATACTGCTGCTGGAGTATCCTTTTTTTGAGACC
TTTTTGCTGCTGCCAAGGCCATCGCACGAGTCTGAGGGGTAGGAACTTGG
AGGAGTTGCGGATGCTGGCTTACTGCGGTTTTTAGGCTGCTGGCGATGGA
CGTAGATGCCGCTCCTGCGGATTTTGCGATACAGCGAGATGTACTTGCCC
GCTGTCGTCGTCCTTGGAACAATGCACTGCTCACAGAAGGCGGTCTTGCT
GCGGGCGGCCTCGCTCAGGTGGGCGTGGCCGAGGGCCTGCAGGAAGGCCA
GGACGAAGGCGTAGCAGTTGTGGCTCTCCTCCGCATAACTGGCGATGGAC
CAGCGCACCGATTGGGCGCAGATCTGCTGCAGGACCTCGTCCCAAAAGTC
GTGCCACGGCTCCGGCACATCGCCCACCATCAGCGACTGCCGCCACTCCG
GAGGATTATCATCCCGCCGATGGCGGCGAAGGCCAAAGCGATCGAACTCC
ACGATGTCGCCGCCGGATGTGGTCACTGCGATATGCAAATCGGTGGCGTT
GCTGTAATCGTTGAGGAAATCGCCGGCGGAGGGACGCAGGACAATGGCGC
ACGGATGCTGCGTGGCCCGCACAAAAGGATATGGCAGGCGGAAGGGCAGG
AGGAGGAGGCGTGGCCCGGCCCTGTCTAGTTGCGCACTCGGATCCGCATC
CCCATCGACATCCCCATGCGCATCCACATCCGCGTCCAGTGGGGCATTGC
AATGGGGACAAGTGTGCGGCAAAGTGAAGCAAAAAACTTTCACGTTGCAG
TGATGAAAACAGAGGATGCCCCGATCCGAGGTAATTGTGGTTGTACTTGT
CGT
BO08510.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:25:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9967-PB | 897 | CG9967-RB | 10..894 | 903..19 | 4375 | 99.7 | Minus |
CG9967-PA | 897 | CG9967-RA | 10..894 | 903..19 | 4375 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:03:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9967-RC | 1628 | CG9967-RC | 619..1503 | 903..19 | 4395 | 99.8 | Minus |
CG9967-RA | 1647 | CG9967-RA | 675..1559 | 903..19 | 4395 | 99.8 | Minus |
CG9967-RB | 1783 | CG9967-RB | 774..1658 | 903..19 | 4395 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:03:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2308886..2309293 | 19..426 | 2040 | 100 | Plus |
2L | 23513712 | 2L | 2310126..2310418 | 611..903 | 1435 | 99.3 | Plus |
2L | 23513712 | 2L | 2309516..2309712 | 424..620 | 955 | 99 | Plus |
Blast to na_te.dros performed on 2015-02-12 12:03:49 has no hits.
BO08510.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:49:01 Download gff for
BO08510.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9967-PA | 10..897 | 15..903 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:44:27 Download gff for
BO08510.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9967-PA | 10..897 | 15..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:49:03 Download gff for
BO08510.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9967-RB | 774..1663 | 11..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:54:10 Download gff for
BO08510.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9967-RB | 774..1663 | 11..903 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:54:10 Download gff for
BO08510.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2309516..2309702 | 424..610 | 100 | <- | Plus |
2L | 2308881..2309290 | 11..423 | 99 | <- | Plus |
2L | 2310126..2310418 | 611..903 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:49:03 Download gff for
BO08510.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2308881..2309290 | 11..423 | 99 | <- | Plus |
arm_2L | 2309516..2309702 | 424..610 | 100 | <- | Plus |
arm_2L | 2310126..2310418 | 611..903 | 99 | | Plus |
BO08510.5prime Sequence
918 bp (777 high quality bases) assembled on 2006-01-06
> BO08510.5prime
GAAGTTATCAGTCGACATGTTGGCTACGACAAGTACAACCACAATTACCT
CGGATCCGGGCATCCTCTGTTTTCATCACTGCAACGTGAAAGTTTTCTGC
TTCACTTTGCCGCACACTTGTCCCCATTGCAATGCCCCACTGGACGCGGA
TGTGGATGCGCATGGGGATGTCGATGGGGATGCGGATCCGAGTGCGCAAC
TAGACAGGGCCGGGCCACGCCTCCTCCTCCTGCCCTTCCGCCTGCCATAT
CCTTTTGTGCGGGCCACGCAGCATCCGTGCGCCATTGTCCTGCGTCCCTC
CGCCGGCGATTTCCTCAACGATTACAGCAACGCCACCGATTTGCATATCG
CAGTGACCACATCCGGCGGCGACATCGTGGAGTTCGATCGCTTTGGCCTT
CGCCGCCATCGGCGGGATGATAATCCTCCGGAGTGGCGGCAGTCGCTGAT
GGTGGGCGATGTGCCGGAGCCGTGGCACGACTTTTGGGACGAGGTCCTGC
AGCAGATCTGCGCCCAATCGGTGCGCTGGTCCATCGCCAGTTATGCGGAG
GAGAGCCACAACTGCTACGCCTTCGTCCTGGCCTTCCTGCAGGCCCTCGG
CCACGCCCACCTGAGCGAGGCCGCCCGCAGCAAGACCGCCTTCTGTGAGC
AGTGCATTGTTCCAAGGACGACGACAGCGGGCAAGTACATCTCGCTGTAT
CGCANAATCCGCAGGAGCGGCATCTACGTCCATCGCCAGCAGCCTAAAAA
CCGCAGTAAGCCAGCATCCGCAACTCCTCCAAGTTCCTACCCCTCAGACT
CGTGCGATGGCCTTGGCAGCAGCAAAAAGGTCTCAAAAAAAAGATACTCC
AGCAGCAGTATTACAGGACTTGCCAACCGCCCGCGGCCCACGCTCTGCAC
CATCGAAAAGGCAAGCTT
BO08510.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:25:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9967-PB | 897 | CG9967-RB | 1..891 | 17..907 | 4411 | 99.7 | Plus |
CG9967-PA | 897 | CG9967-RA | 1..891 | 17..907 | 4411 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:15:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9967-RC | 1628 | CG9967-RC | 609..1500 | 16..907 | 4434 | 99.8 | Plus |
CG9967-RA | 1647 | CG9967-RA | 665..1556 | 16..907 | 4434 | 99.8 | Plus |
CG9967-RB | 1783 | CG9967-RB | 764..1655 | 16..907 | 4434 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:15:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2308889..2309293 | 907..503 | 1999 | 99.5 | Minus |
2L | 23513712 | 2L | 2310126..2310428 | 318..16 | 1515 | 100 | Minus |
2L | 23513712 | 2L | 2309516..2309712 | 505..309 | 955 | 99 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:15:24 has no hits.
BO08510.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:49:02 Download gff for
BO08510.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9967-PA | 1..897 | 17..914 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:44:29 Download gff for
BO08510.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9967-PA | 1..897 | 17..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:30:43 Download gff for
BO08510.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9967-RB | 755..1663 | 5..918 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:00:18 Download gff for
BO08510.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9967-RB | 755..1663 | 5..918 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:00:18 Download gff for
BO08510.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2310126..2310437 | 5..318 | 98 | | Minus |
2L | 2308881..2309290 | 506..918 | 98 | <- | Minus |
2L | 2309516..2309702 | 319..505 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:30:43 Download gff for
BO08510.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2308881..2309290 | 506..918 | 98 | <- | Minus |
arm_2L | 2309516..2309702 | 319..505 | 100 | <- | Minus |
arm_2L | 2310126..2310437 | 5..318 | 98 | | Minus |
BO08510.complete Sequence
928 bp (928 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631222
> BO08510.complete
GAAGTTATCAGTCGACATGTTGGCTACGACAAGTACAACCACAATTACCT
CGGATCCGGGCATCCTCTGTTTTCATCACTGCAACGTGAAAGTTTTCTGC
TTCACTTTGCCGCACACTTGTCCCCATTGCAATGCCCCACTGGACGCGGA
TGTGGATGCGCATGGGGATGTCGATGGGGATGCGGATCCGAGTGCGCAAC
TAGACAGGGCCGGGCCACGCCTCCTCCTCCTGCCCTTCCGCCTGCCATAT
CCTTTTGTGCGGGCCACGCAGCATCCGTGCGCCATTGTCCTGCGTCCCTC
CGCCGGCGATTTCCTCAACGATTACAGCAACGCCACCGATTTGCATATCG
CAGTGACCACATCCGGCGGCGACATCGTGGAGTTCGATCGCTTTGGCCTT
CGCCGCCATCGGCGGGATGATAATCCTCCGGAGTGGCGGCAGTCGCTGAT
GGTGGGCGATGTGCCGGAGCCGTGGCACGACTTTTGGGACGAGGTCCTGC
AGCAGATCTGCGCCCAATCGGTGCGCTGGTCCATCGCCAGTTATGCGGAG
GAGAGCCACAACTGCTACGCCTTCGTCCTGGCCTTCCTGCAGGCCCTCGG
CCACGCCCACCTGAGCGAGGCCGCCCGCAGCAAGACCGCCTTCTGTGAGC
AGTGCATTGTTCCAAGGACGACGACAGCGGGCAAGTACATCTCGCTGTAT
CGCAAAATCCGCAGGAGCGGCATCTACGTCCATCGCCAGCAGCCTAAAAA
CCGCAGTAAGCCAGCATCCGCAACTCCTCCAAGTTCCTACCCCTCAGACT
CGTGCGATGGCCTTGGCAGCAGCAAAAAGGTCTCAAAAAAAGGATACTCC
AGCAGCAGTATTACAGGACTTGCCAACCGCCCGCGGCCCACGCTCTGCAC
CATCGAAGAGGCAAGCTTTCTAGACCAT
BO08510.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:03:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9967-RC | 897 | CG9967-PC | 1..894 | 17..910 | 4470 | 100 | Plus |
CG9967-RA | 897 | CG9967-PA | 1..894 | 17..910 | 4470 | 100 | Plus |
CG9967-RB | 897 | CG9967-PB | 1..894 | 17..910 | 4470 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:03:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9967-RC | 1628 | CG9967-RC | 609..1503 | 16..910 | 4475 | 100 | Plus |
CG9967-RA | 1647 | CG9967-RA | 665..1559 | 16..910 | 4475 | 100 | Plus |
CG9967-RB | 1783 | CG9967-RB | 764..1658 | 16..910 | 4475 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:03:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2308886..2309293 | 910..503 | 2040 | 100 | Minus |
2L | 23513712 | 2L | 2310126..2310428 | 318..16 | 1515 | 100 | Minus |
2L | 23513712 | 2L | 2309516..2309712 | 505..309 | 955 | 99 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:03:47 has no hits.
BO08510.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:11:55 Download gff for
BO08510.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9967-RA | 1..897 | 17..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:04:34 Download gff for
BO08510.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9967-RA | 632..1540 | 5..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:39 Download gff for
BO08510.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9967-RB | 770..1658 | 22..912 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:11:55 Download gff for
BO08510.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9967-RA | 632..1540 | 5..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:13:50 Download gff for
BO08510.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9967-RB | 770..1658 | 22..912 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:13:50 Download gff for
BO08510.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2308884..2309290 | 506..912 | 99 | <- | Minus |
2L | 2309516..2309702 | 319..505 | 100 | <- | Minus |
2L | 2310126..2310422 | 22..318 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:39 Download gff for
BO08510.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2309516..2309702 | 319..505 | 100 | <- | Minus |
arm_2L | 2308884..2309290 | 506..912 | 99 | <- | Minus |
arm_2L | 2310126..2310422 | 22..318 | 100 | | Minus |
BO08510.pep Sequence
Translation from 16 to 928
> BO08510.pep
MLATTSTTTITSDPGILCFHHCNVKVFCFTLPHTCPHCNAPLDADVDAHG
DVDGDADPSAQLDRAGPRLLLLPFRLPYPFVRATQHPCAIVLRPSAGDFL
NDYSNATDLHIAVTTSGGDIVEFDRFGLRRHRRDDNPPEWRQSLMVGDVP
EPWHDFWDEVLQQICAQSVRWSIASYAEESHNCYAFVLAFLQALGHAHLS
EAARSKTAFCEQCIVPRTTTAGKYISLYRKIRRSGIYVHRQQPKNRSKPA
SATPPSSYPSDSCDGLGSSKKVSKKGYSSSSITGLANRPRPTLCTIEEAS
FLDH
BO08510.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:13:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9967-PC | 298 | CG9967-PC | 1..298 | 1..298 | 1615 | 100 | Plus |
CG9967-PA | 298 | CG9967-PA | 1..298 | 1..298 | 1615 | 100 | Plus |
CG9967-PB | 298 | CG9967-PB | 1..298 | 1..298 | 1615 | 100 | Plus |