Clone Sequence Records
BO08517.3prime Sequence
992 bp (899 high quality bases) assembled on 2006-01-06
> BO08517.3prime
ATGGTCTAGAAAGCTTGCGGAACGCGATGATCCGCCCATGGAGCCGGACC
CGGAGCCGCCGCCAGCCATGCGCCGCTTCTTTTTCTTCTTGGCCGTCAGA
CTCTCCTGGCCGCTGTCCGTGTTGGAATCGCCGCCATCGTCGCTCTCCTC
CTCCTCCGAAGACGAGGAGCTGCTCGACGAGGAGGAGCTTGAATTGCTGG
AGCTGTCCGATGCGAAGCCGGTGCTCTCGTTCAGGTTAATACTATCGGCG
ATCTGGGCCAGCTCCGGTCGCTGGTCTCGCAGCACGCGCAGCCACTTGCG
TGACAACTTTGGCCGGCCGCGAACAGTCTTGTGCCAGACGCAGGGGAAGT
TCGTCTGCGAACTGAAGTTCTGGGTGATGGCAATGGTGTCGTCCATGTTG
AGCACCACGTGCCACCAGCCGCCGGGCACGAATACAGTCTCGCCTGCTCC
CTGCAGCACTTCGATGGGGCGGTATTGCTCCGGCCAACTAGGCAGCTGGG
TGCGCGGATATATGGTGCTGAACCAGGTGATGGCCTCGTCTCGCTGCTTG
CCACCCATGGCACTGGTGACCTTGAGCAGCTCCTTGGGCGTTTGGGTGGG
GAACAGGCACCAGCGCTTGTGGCCGCGGATCAGCGTGTTCCAGGCACTAG
TGCCCAGTGGATCAATGTGGATGCCGGTGCCGGAGCGAGCCGGTCCCATG
ACAAACCAGCGGTAAGGCGGACGACGATTCTCGCCGCAGTACTGGAAGAG
GTCGTCGCGAANATACTTGGGCACCACATAGTCATCCAGGAGCTTGCGCC
GACGATGGTGTTCGCCGAAGCTGCTGTCGAAGATGTACAGCGGGCTGTCA
TCGCGCGTGCTCTGCATGTACTCCACGTAGTACTTCATCTTCATCTTGAC
GCTATAGCCCTCGTTGTCTTCGCCGCACTTGAACTTCTGGGTGCGATACT
TCTTGGCCAGGCGGGCTAGTGTCCACTTTTCAGCGCCAACCA
BO08517.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:25:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5383-PA | 1227 | PSR-RA | 262..1224 | 981..19 | 4746 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 07:34:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PSR-RB | 1590 | CG5383-RB | 326..1300 | 992..19 | 4809 | 99.6 | Minus |
| PSR-RA | 1590 | CG5383-RA | 326..1300 | 992..19 | 4809 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 07:34:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22361072..22362046 | 19..992 | 4784 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-01 07:34:56 has no hits.
BO08517.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:49:13 Download gff for
BO08517.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PSR-PA | 251..1227 | 16..991 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:44:46 Download gff for
BO08517.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5383-PA | 251..1227 | 16..991 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:15:55 Download gff for
BO08517.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PSR-RA | 327..1300 | 19..991 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:45:01 Download gff for
BO08517.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PSR-RA | 327..1300 | 19..991 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:45:01 Download gff for
BO08517.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22361072..22362045 | 19..991 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:15:55 Download gff for
BO08517.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18186794..18187767 | 19..991 | 99 | | Plus |
BO08517.5prime Sequence
851 bp (850 high quality bases) assembled on 2006-01-06
> BO08517.5prime
GAAGTTATCAGTCGACATGAGCGAGGAATTCAAGCTGCCCAAGCGTTCCC
GCAAGCGCACACGTGAGGTGAAGCGCAAGGCTCGTCCGGAGCTGGACGGC
GAGAATGCCTGGTCGGCCATGCGGTACTGTGAGAAGTTCGAGCCATTTTG
GGATTTCACCGATAACCTGGAGCGGATCGAGGAGTCGCAGGTGCCGGAGT
CGGAGTTCATCGAACGCTTCGAGCGACCCTACAAGCCGGTGGTCATTCGC
GGCTGCACCGATGGCTGGTTGGCGCTGGAAAAGTGGACACTAGCCCGCCT
GGCCAAGAAGTATCGCAACCAGAAGTTCAAGTGCGGCGAGGACAACGAGG
GCTATAGCGTCAAGATGAAGATGAAGTACTACGTGGAGTACATGCAGAGC
ACGCGCGATGACAGCCCGCTGTACATCTTCGACAGCAGCTTCGGCGAACA
CCATCGTCGGCGCAAGCTCCTGGATGACTATGTGGTGCCCAAGTATTTTC
GCGACGACCTCTTCCAGTACTGCGGCGAGAATCGTCGTCCGCCTTACCGC
TGGTTTGTCATGGGACCGGCTCGCTCCGGCACCGGCATCCACATTGATCC
ACTGGGCACTAGTGCCTGGAACACGCTGATCCGCGGCCACAAGCGCTGGT
GCCTGTTCCCCACCCAAACGCCCAAGGAGCTGCTCAAGGTCACCAGTGCC
ATGGGTGGCAAGCAGCGAGACGAGGCCATCACCTGGTTCAGCACCATATA
TCCGCGCACCCAGCTGCCTAGTTGGCCGGAGCAATACCGCCCCATCGAAG
TGCTGCAGGGAGCAGGCGAGACTGTATTCGTGCCCGGCGGCTGGTGGCAC
G
BO08517.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:25:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5383-PA | 1227 | PSR-RA | 1..835 | 17..851 | 4175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:16:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PSR-RB | 1590 | CG5383-RB | 77..911 | 17..851 | 4175 | 100 | Plus |
| PSR-RA | 1590 | CG5383-RA | 77..911 | 17..851 | 4175 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:16:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22361461..22362295 | 851..17 | 4175 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:16:40 has no hits.
BO08517.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:49:14 Download gff for
BO08517.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PSR-PA | 1..835 | 17..851 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:44:48 Download gff for
BO08517.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5383-PA | 1..835 | 17..851 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:30:52 Download gff for
BO08517.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PSR-RA | 69..911 | 8..851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:02:13 Download gff for
BO08517.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PSR-RA | 69..911 | 8..851 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:02:13 Download gff for
BO08517.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22361461..22362303 | 8..851 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:30:52 Download gff for
BO08517.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18187183..18188025 | 8..851 | 99 | | Minus |
BO08517.complete Sequence
1258 bp (1258 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631224
> BO08517.complete
GAAGTTATCAGTCGACATGAGCGAGGAATTCAAGCTGCCCAAGCGTTCCC
GCAAGCGCACACGTGAGGTGAAGCGCAAGGCTCGTCCGGAGCTGGACGGC
GAGAATGCCTGGTCGGCCATGCGGTACTGTGAGAAGTTCGAGCCATTTTG
GGATTTCACCGATAACCTGGAGCGGATCGAGGAGTCGCAGGTGCCGGAGT
CGGAGTTCATCGAACGCTTCGAGCGACCCTACAAGCCGGTGGTCATTCGC
GGCTGCACCGATGGCTGGTTGGCGCTGGAAAAGTGGACACTAGCCCGCCT
GGCCAAGAAGTATCGCAACCAGAAGTTCAAGTGCGGCGAGGACAACGAGG
GCTATAGCGTCAAGATGAAGATGAAGTACTACGTGGAGTACATGCAGAGC
ACGCGCGATGACAGCCCGCTGTACATCTTCGACAGCAGCTTCGGCGAACA
CCATCGTCGGCGCAAGCTCCTGGATGACTATGTGGTGCCCAAGTATTTTC
GCGACGACCTCTTCCAGTACTGCGGCGAGAATCGTCGTCCGCCTTACCGC
TGGTTTGTCATGGGACCGGCTCGCTCCGGCACCGGCATCCACATTGATCC
ACTGGGCACTAGTGCCTGGAACACGCTGATCCGCGGCCACAAGCGCTGGT
GCCTGTTCCCCACCCAAACGCCCAAGGAGCTGCTCAAGGTCACCAGTGCC
ATGGGTGGCAAGCAGCGAGACGAGGCCATCACCTGGTTCAGCACCATATA
TCCGCGCACCCAGCTGCCTAGTTGGCCGGAGCAATACCGCCCCATCGAAG
TGCTGCAGGGAGCAGGCGAGACTGTATTCGTGCCCGGCGGCTGGTGGCAC
GTGGTGCTCAACATGGACGACACCATTGCCATCACCCAGAACTTCAGTTC
GCAGACGAACTTCCCCTGCGTCTGGCACAAGACTGTTCGCGGCCGGCCAA
AGTTGTCACGCAAGTGGCTGCGCGTGCTGCGAGACCAGCGACCGGAGCTG
GCCCAGATCGCCGATAGTATTAACCTGAACGAGAGCACCGGCTTCGCATC
GGACAGCTCCAGCAATTCAAGCTCCTCCTCGTCGAGCAGCTCCTCGTCTT
CGGAGGAGGAGGAGAGCGACGATGGCGGCGATTCCAACACGGACAGCGGC
CAGGAGAGTCTGACGGCCAAGAAGAAAAAGAAGCGGCGCATGGCTGGCGG
CGGCTCCGGGTCCGGCTCCATGGGCGGATCATCGCGTTCCGCAAGCTTTC
TAGACCAT
BO08517.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:01:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PSR-RB | 1326 | CG5383-PB | 1..1224 | 17..1240 | 6120 | 100 | Plus |
| PSR-RA | 1227 | CG5383-PA | 1..1224 | 17..1240 | 6120 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:01:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PSR-RB | 1590 | CG5383-RB | 77..1300 | 17..1240 | 6120 | 100 | Plus |
| PSR-RA | 1590 | CG5383-RA | 77..1300 | 17..1240 | 6120 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:01:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22361072..22362295 | 1240..17 | 6120 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:01:50 has no hits.
BO08517.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:11:58 Download gff for
BO08517.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PSR-RA | 1..1227 | 17..1243 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:32:49 Download gff for
BO08517.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PSR-RA | 231..1462 | 8..1240 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:44:21 Download gff for
BO08517.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PSR-RA | 77..1300 | 17..1242 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:11:59 Download gff for
BO08517.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PSR-RA | 231..1462 | 8..1240 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:49:07 Download gff for
BO08517.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PSR-RA | 77..1300 | 17..1242 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:49:07 Download gff for
BO08517.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22361069..22362295 | 17..1242 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:44:21 Download gff for
BO08517.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18186791..18188017 | 17..1242 | 99 | | Minus |
BO08517.pep Sequence
Translation from 16 to 1258
> BO08517.pep
MSEEFKLPKRSRKRTREVKRKARPELDGENAWSAMRYCEKFEPFWDFTDN
LERIEESQVPESEFIERFERPYKPVVIRGCTDGWLALEKWTLARLAKKYR
NQKFKCGEDNEGYSVKMKMKYYVEYMQSTRDDSPLYIFDSSFGEHHRRRK
LLDDYVVPKYFRDDLFQYCGENRRPPYRWFVMGPARSGTGIHIDPLGTSA
WNTLIRGHKRWCLFPTQTPKELLKVTSAMGGKQRDEAITWFSTIYPRTQL
PSWPEQYRPIEVLQGAGETVFVPGGWWHVVLNMDDTIAITQNFSSQTNFP
CVWHKTVRGRPKLSRKWLRVLRDQRPELAQIADSINLNESTGFASDSSSN
SSSSSSSSSSSSEEEESDDGGDSNTDSGQESLTAKKKKKRRMAGGGSGSG
SMGGSSRSASFLDH
BO08517.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:13:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PSR-PB | 441 | CG5383-PB | 1..410 | 1..410 | 2199 | 99.8 | Plus |
| PSR-PA | 408 | CG5383-PA | 1..408 | 1..408 | 2196 | 100 | Plus |
| CG7200-PB | 425 | CG7200-PB | 174..309 | 155..303 | 204 | 34.4 | Plus |
| CG7200-PA | 425 | CG7200-PA | 174..309 | 155..303 | 204 | 34.4 | Plus |
