Clone BO08523 Report

Search the DGRC for BO08523

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:85
Well:23
Vector:pDNR-Dual
Associated Gene/Transcriptmts-RA
Protein status:BO08523.pep: validated full length
Sequenced Size:961

Clone Sequence Records

BO08523.3prime Sequence

931 bp (824 high quality bases) assembled on 2006-01-06

> BO08523.3prime
ATGGTCTAGAAAGCTTGCAAGGAAATAATCGGGTGTTCTTCGCGTAACAT
GAGGCTCCCCGCGCCTGGGTGCTGGATCAAATTGTAGGAATGAAAATTTA
AGTGAATCATCCAGTTCCATAAGAGCCGCTTGGTTGCCACAGCGGTAGCA
ATAGTTTGGCGCTGAGAATATTGTGACCACATTGCGATCGTGACACCAGT
TGTAGCCCTCCATCACCAGCTGATGGGCGCGCGACACCAGTGTCAGGCCG
TTTGTGTTGTTAAAGGTTTCCGAAATATCCTGGCCAAAGGTGTAACCGGC
GCCACGAGGCGAGATTCCCCAGCCACCCCTGTCATCGGGATCGGACCAGA
GCAGATCGCACATGGGACCCTCGTGCGGAACCTCCTGCAAGCGATCGAGG
GCCCGAATGTGATCCAGACTGTCGATCGAGGGACTGAGGCCTCCGTGCAG
GCAGAAGATCTGCCCGTCGACGAGTGCCGTCAGTGGCAAGTAGTCGAACA
GATCCGTGAAGTACTTCCAAACGTTGGCATTGCCATACTTGCGCAGGCAC
TCGTCGTAGAAGCCGTACACCTGTGTGATCTGGCGCGACTCGTGGTTACC
GCGCAGGATGGTGATGCGCTCGCGATAGCGAACCTTCAGGGCCACCAGAA
GGGTCACGGTCTCCACGGAGTAGTATCCACGGTCCACGTAGTCGCCCATG
AACAGGTAGTTGGTGTCCGGAGACTTGCCGCCTATCCGGAAGAGCTCCAT
GAGGTCGTGAAACTGACCGTGGACATCTCCGCACACTGTCACCGGGCATT
TTACCTCCTGCACATTGGACTCCTTGGAGAGAATCTCCTTGGCCTTGTCG
CAGAGGGTGCGAACTTGTGTCTCTGTCAACTGATTGCATTCGTTTCACTG
CTCAATCCATTGGATCAGATCTTTTGTTGTT

BO08523.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:26:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG7109-PA 930 mts-RA 34..927 912..19 4420 99.7 Minus
CG32505-PA 924 Pp4-19C-RA 340..401 597..536 185 91.9 Minus
CG32505-PE 924 Pp4-19C-RE 340..401 597..536 185 91.9 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:31:33
Subject Length Description Subject Range Query Range Score Percent Strand
mts-RC 1507 CG7109-RC 274..1186 931..19 4490 99.6 Minus
mts-RB 3102 CG7109-RB 417..1329 931..19 4490 99.6 Minus
mts-RA 2051 CG7109-RA 274..1186 931..19 4490 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:31:29
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7830460..7831026 845..279 2835 100 Minus
2L 23513712 2L 7831467..7831659 281..89 965 100 Minus
X 23542271 X 20422199..20422708 283..792 510 73.3 Plus
X 23542271 X 6372311..6372515 510..714 365 78.5 Plus
2L 23513712 2L 7828066..7828154 931..843 355 93.3 Minus
2L 23513712 2L 7831734..7831803 88..19 350 100 Minus
X 23542271 X 16558837..16558960 672..795 200 77.4 Plus
X 23542271 X 16567436..16567559 672..795 185 76.6 Plus
Blast to na_te.dros performed on 2015-02-12 04:31:31 has no hits.

BO08523.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:49:23 Download gff for BO08523.3prime
Subject Subject Range Query Range Percent Splice Strand
mts-PA 15..930 15..931 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:45:01 Download gff for BO08523.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7109-PA 15..930 15..931 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:47:26 Download gff for BO08523.3prime
Subject Subject Range Query Range Percent Splice Strand
mts-RA 274..1192 12..931 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:14:35 Download gff for BO08523.3prime
Subject Subject Range Query Range Percent Splice Strand
mts-RA 274..1192 12..931 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:14:35 Download gff for BO08523.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 7828066..7828153 844..931 95 -> Minus
2L 7830462..7831025 280..843 100 -> Minus
2L 7831469..7831659 89..279 100 -> Minus
2L 7831734..7831809 12..88 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:47:26 Download gff for BO08523.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7831469..7831659 89..279 100 -> Minus
arm_2L 7831734..7831809 12..88 97   Minus
arm_2L 7828066..7828153 844..931 95 -> Minus
arm_2L 7830462..7831025 280..843 100 -> Minus

BO08523.5prime Sequence

952 bp (786 high quality bases) assembled on 2006-01-06

> BO08523.5prime
GAAGTTATCAGTCGACATGGAGGATAAAGCAACAACAAAAGATCTTGATC
AATGGATTGAGCAGTTGAACGAATGCAATCAGTTGACAGAGACACAAGTT
CGCACCCTCTGCGACAAGGCCAAGGAGATTCTCTCCAAGGAGTCCAATGT
GCAGGAGGTAAAATGCCCGGTGACAGTGTGCGGAGATGTCCACGGTCAGT
TTCACGACCTCATGGAGCTCTTCCGGATAGGCGGCAAGTCTCCGGACACC
AACTACCTGTTCATGGGCGACTACGTGGACCGTGGATACTACTCCGTGGA
GACCGTGACCCTTCTGGTGGCCCTGAAGGTTCGCTATCGCGAGCGCATCA
CCATCCTGCGCGGTAACCACGAGTCGCGCCAGATCACACAGGTGTACGGC
TTCTACGACGAGTGCCTGCGCAAGTATGGCAATGCCAACGTTTGGAAGTA
CTTCACGGATCTGTTCGACTACTTGCCACTGACGGCACTCGTCGACGGGC
AGATCTTCTGCCTGCACGGAGGCCTCAGTCCCTCGATCGACAGTCTGGAT
CACATTCGGGCCCTCGATCGCTTGCAGGAGGTTCCGCACGAGGGTCCCAT
GTGCGATCTGCTCTGGTCCGATCCCGATGACAGGGGTGGCTGGGGAATCT
CGCCTCGTGGCGCCGGTTACACCTTTGGCCAGGATATTTCGGAAACCTTT
AACAACACAAACGGCCTGACACTGGTGTCGCGCGCCCATCAGCTGGTGAT
GGAGGGCTACAACTGGTGTCACGATCGCAATGTGGTCACAATATTCTCAG
CGCCAAACTATTGCTACCGCTGTGGCAACCAAGCGGCTCTTATGGAACTG
GATGATTCACTTAAATTTTCATTCCTACAATTTGATCCAGCACCCAGGCG
CGGGAAGCCTCATGTTACGCGAAGAACACCCGATTATTTTCCTTGCAGCT
TT

BO08523.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:26:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG7109-PA 930 mts-RA 1..923 17..939 4590 99.8 Plus
CG32505-PA 924 Pp4-19C-RA 340..401 365..426 185 91.9 Plus
CG32505-PE 924 Pp4-19C-RE 340..401 365..426 185 91.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:13:21
Subject Length Description Subject Range Query Range Score Percent Strand
mts-RC 1507 CG7109-RC 260..1182 17..939 4600 99.9 Plus
mts-RB 3102 CG7109-RB 403..1325 17..939 4600 99.9 Plus
mts-RA 2051 CG7109-RA 260..1182 17..939 4600 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:13:18
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7830460..7831026 117..683 2835 100 Plus
2L 23513712 2L 7831467..7831659 681..873 965 100 Plus
2L 23513712 2L 7828052..7828154 17..119 515 100 Plus
X 23542271 X 20422199..20422708 679..170 510 73.3 Minus
X 23542271 X 6372311..6372515 452..248 365 78.5 Minus
2L 23513712 2L 7831734..7831799 874..939 315 98.5 Plus
X 23542271 X 16558837..16558960 290..167 200 77.4 Minus
X 23542271 X 16567436..16567559 290..167 185 76.6 Minus
Blast to na_te.dros performed on 2015-02-10 20:13:20 has no hits.

BO08523.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:49:24 Download gff for BO08523.5prime
Subject Subject Range Query Range Percent Splice Strand
mts-PA 1..930 17..947 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:45:02 Download gff for BO08523.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7109-PA 1..930 17..947 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:30:10 Download gff for BO08523.5prime
Subject Subject Range Query Range Percent Splice Strand
mts-RA 258..1192 13..952 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:56:06 Download gff for BO08523.5prime
Subject Subject Range Query Range Percent Splice Strand
mts-RA 258..1192 13..952 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:56:06 Download gff for BO08523.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 7828050..7828153 13..118 98 -> Plus
2L 7830462..7831025 119..682 100 -> Plus
2L 7831469..7831659 683..873 100 -> Plus
2L 7831734..7831809 874..952 92   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:30:10 Download gff for BO08523.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7828050..7828153 13..118 98 -> Plus
arm_2L 7830462..7831025 119..682 100 -> Plus
arm_2L 7831469..7831659 683..873 100 -> Plus
arm_2L 7831734..7831809 874..952 92   Plus

BO08523.complete Sequence

961 bp (961 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ631225

> BO08523.complete
GAAGTTATCAGTCGACATGGAGGATAAAGCAACAACAAAAGATCTTGATC
AATGGATTGAGCAGTTGAACGAATGCAATCAGTTGACAGAGACACAAGTT
CGCACCCTCTGCGACAAGGCCAAGGAGATTCTCTCCAAGGAGTCCAATGT
GCAGGAGGTAAAATGCCCGGTGACAGTGTGCGGAGATGTCCACGGTCAGT
TTCACGACCTCATGGAGCTCTTCCGGATAGGCGGCAAGTCTCCGGACACC
AACTACCTGTTCATGGGCGACTACGTGGACCGTGGATACTACTCCGTGGA
GACCGTGACCCTTCTGGTGGCCCTGAAGGTTCGCTATCGCGAGCGCATCA
CCATCCTGCGCGGTAACCACGAGTCGCGCCAGATCACACAGGTGTACGGC
TTCTACGACGAGTGCCTGCGCAAGTATGGCAATGCCAACGTTTGGAAGTA
CTTCACGGATCTGTTCGACTACTTGCCACTGACGGCACTCGTCGACGGGC
AGATCTTCTGCCTGCACGGAGGCCTCAGTCCCTCGATCGACAGTCTGGAT
CACATTCGGGCCCTCGATCGCTTGCAGGAGGTTCCGCACGAGGGTCCCAT
GTGCGATCTGCTCTGGTCCGATCCCGATGACAGGGGTGGCTGGGGAATCT
CGCCTCGTGGCGCCGGTTACACCTTTGGCCAGGATATTTCGGAAACCTTT
AACAACACAAACGGCCTGACACTGGTGTCGCGCGCCCATCAGCTGGTGAT
GGAGGGCTACAACTGGTGTCACGATCGCAATGTGGTCACAATATTCTCAG
CGCCAAACTATTGCTACCGCTGTGGCAACCAAGCGGCTCTTATGGAACTG
GATGATTCACTTAAATTTTCATTCCTACAATTTGATCCAGCACCCAGGCG
CGGGGAGCCTCATGTTACGCGAAGAACACCCGATTATTTCCTTGCAAGCT
TTCTAGACCAT

BO08523.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:14:38
Subject Length Description Subject Range Query Range Score Percent Strand
mts-RC 930 CG7109-PC 1..927 17..943 4635 100 Plus
mts-RB 930 CG7109-PB 1..927 17..943 4635 100 Plus
mts-RA 930 CG7109-PA 1..927 17..943 4635 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:14:39
Subject Length Description Subject Range Query Range Score Percent Strand
mts-RC 1507 CG7109-RC 260..1186 17..943 4635 100 Plus
mts-RB 3102 CG7109-RB 403..1329 17..943 4635 100 Plus
mts-RA 2051 CG7109-RA 260..1186 17..943 4635 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:14:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7830460..7831026 117..683 2835 100 Plus
2L 23513712 2L 7831467..7831659 681..873 965 100 Plus
2L 23513712 2L 7828052..7828154 17..119 515 100 Plus
X 23542271 X 20422199..20422708 679..170 510 73.3 Minus
X 23542271 X 6372311..6372515 452..248 365 78.5 Minus
2L 23513712 2L 7831734..7831803 874..943 350 100 Plus
X 23542271 X 16558837..16558960 290..167 200 77.4 Minus
X 23542271 X 16567436..16567559 290..167 185 76.6 Minus
Blast to na_te.dros performed on 2014-11-27 16:14:37 has no hits.

BO08523.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:11:43 Download gff for BO08523.complete
Subject Subject Range Query Range Percent Splice Strand
mts-RA 1..930 17..947 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:32:33 Download gff for BO08523.complete
Subject Subject Range Query Range Percent Splice Strand
mts-RA 308..1242 13..950 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:28 Download gff for BO08523.complete
Subject Subject Range Query Range Percent Splice Strand
mts-RA 260..1186 17..945 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:11:44 Download gff for BO08523.complete
Subject Subject Range Query Range Percent Splice Strand
mts-RA 308..1242 13..950 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:14:11 Download gff for BO08523.complete
Subject Subject Range Query Range Percent Splice Strand
mts-RA 260..1186 17..945 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:14:11 Download gff for BO08523.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7828052..7828153 17..118 100 -> Plus
2L 7830462..7831025 119..682 100 -> Plus
2L 7831469..7831659 683..873 100 -> Plus
2L 7831734..7831803 874..945 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:28 Download gff for BO08523.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7828052..7828153 17..118 100 -> Plus
arm_2L 7830462..7831025 119..682 100 -> Plus
arm_2L 7831469..7831659 683..873 100 -> Plus
arm_2L 7831734..7831803 874..945 97   Plus

BO08523.pep Sequence

Translation from 16 to 961

> BO08523.pep
MEDKATTKDLDQWIEQLNECNQLTETQVRTLCDKAKEILSKESNVQEVKC
PVTVCGDVHGQFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLL
VALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLF
DYLPLTALVDGQIFCLHGGLSPSIDSLDHIRALDRLQEVPHEGPMCDLLW
SDPDDRGGWGISPRGAGYTFGQDISETFNNTNGLTLVSRAHQLVMEGYNW
CHDRNVVTIFSAPNYCYRCGNQAALMELDDSLKFSFLQFDPAPRRGEPHV
TRRTPDYFLASFLDH

BO08523.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:13:51
Subject Length Description Subject Range Query Range Score Percent Strand
mts-PC 309 CG7109-PC 1..309 1..309 1684 100 Plus
mts-PB 309 CG7109-PB 1..309 1..309 1684 100 Plus
mts-PA 309 CG7109-PA 1..309 1..309 1684 100 Plus
Pp4-19C-PH 307 CG32505-PH 6..307 9..309 1091 64.4 Plus
Pp4-19C-PG 307 CG32505-PG 6..307 9..309 1091 64.4 Plus