Clone Sequence Records
BO08523.3prime Sequence
931 bp (824 high quality bases) assembled on 2006-01-06
> BO08523.3prime
ATGGTCTAGAAAGCTTGCAAGGAAATAATCGGGTGTTCTTCGCGTAACAT
GAGGCTCCCCGCGCCTGGGTGCTGGATCAAATTGTAGGAATGAAAATTTA
AGTGAATCATCCAGTTCCATAAGAGCCGCTTGGTTGCCACAGCGGTAGCA
ATAGTTTGGCGCTGAGAATATTGTGACCACATTGCGATCGTGACACCAGT
TGTAGCCCTCCATCACCAGCTGATGGGCGCGCGACACCAGTGTCAGGCCG
TTTGTGTTGTTAAAGGTTTCCGAAATATCCTGGCCAAAGGTGTAACCGGC
GCCACGAGGCGAGATTCCCCAGCCACCCCTGTCATCGGGATCGGACCAGA
GCAGATCGCACATGGGACCCTCGTGCGGAACCTCCTGCAAGCGATCGAGG
GCCCGAATGTGATCCAGACTGTCGATCGAGGGACTGAGGCCTCCGTGCAG
GCAGAAGATCTGCCCGTCGACGAGTGCCGTCAGTGGCAAGTAGTCGAACA
GATCCGTGAAGTACTTCCAAACGTTGGCATTGCCATACTTGCGCAGGCAC
TCGTCGTAGAAGCCGTACACCTGTGTGATCTGGCGCGACTCGTGGTTACC
GCGCAGGATGGTGATGCGCTCGCGATAGCGAACCTTCAGGGCCACCAGAA
GGGTCACGGTCTCCACGGAGTAGTATCCACGGTCCACGTAGTCGCCCATG
AACAGGTAGTTGGTGTCCGGAGACTTGCCGCCTATCCGGAAGAGCTCCAT
GAGGTCGTGAAACTGACCGTGGACATCTCCGCACACTGTCACCGGGCATT
TTACCTCCTGCACATTGGACTCCTTGGAGAGAATCTCCTTGGCCTTGTCG
CAGAGGGTGCGAACTTGTGTCTCTGTCAACTGATTGCATTCGTTTCACTG
CTCAATCCATTGGATCAGATCTTTTGTTGTT
BO08523.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:26:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7109-PA | 930 | mts-RA | 34..927 | 912..19 | 4420 | 99.7 | Minus |
CG32505-PA | 924 | Pp4-19C-RA | 340..401 | 597..536 | 185 | 91.9 | Minus |
CG32505-PE | 924 | Pp4-19C-RE | 340..401 | 597..536 | 185 | 91.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:31:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mts-RC | 1507 | CG7109-RC | 274..1186 | 931..19 | 4490 | 99.6 | Minus |
mts-RB | 3102 | CG7109-RB | 417..1329 | 931..19 | 4490 | 99.6 | Minus |
mts-RA | 2051 | CG7109-RA | 274..1186 | 931..19 | 4490 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:31:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7830460..7831026 | 845..279 | 2835 | 100 | Minus |
2L | 23513712 | 2L | 7831467..7831659 | 281..89 | 965 | 100 | Minus |
X | 23542271 | X | 20422199..20422708 | 283..792 | 510 | 73.3 | Plus |
X | 23542271 | X | 6372311..6372515 | 510..714 | 365 | 78.5 | Plus |
2L | 23513712 | 2L | 7828066..7828154 | 931..843 | 355 | 93.3 | Minus |
2L | 23513712 | 2L | 7831734..7831803 | 88..19 | 350 | 100 | Minus |
X | 23542271 | X | 16558837..16558960 | 672..795 | 200 | 77.4 | Plus |
X | 23542271 | X | 16567436..16567559 | 672..795 | 185 | 76.6 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:31:31 has no hits.
BO08523.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:49:23 Download gff for
BO08523.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mts-PA | 15..930 | 15..931 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:45:01 Download gff for
BO08523.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7109-PA | 15..930 | 15..931 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:47:26 Download gff for
BO08523.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mts-RA | 274..1192 | 12..931 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:14:35 Download gff for
BO08523.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mts-RA | 274..1192 | 12..931 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:14:35 Download gff for
BO08523.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7828066..7828153 | 844..931 | 95 | -> | Minus |
2L | 7830462..7831025 | 280..843 | 100 | -> | Minus |
2L | 7831469..7831659 | 89..279 | 100 | -> | Minus |
2L | 7831734..7831809 | 12..88 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:47:26 Download gff for
BO08523.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7831469..7831659 | 89..279 | 100 | -> | Minus |
arm_2L | 7831734..7831809 | 12..88 | 97 | | Minus |
arm_2L | 7828066..7828153 | 844..931 | 95 | -> | Minus |
arm_2L | 7830462..7831025 | 280..843 | 100 | -> | Minus |
BO08523.5prime Sequence
952 bp (786 high quality bases) assembled on 2006-01-06
> BO08523.5prime
GAAGTTATCAGTCGACATGGAGGATAAAGCAACAACAAAAGATCTTGATC
AATGGATTGAGCAGTTGAACGAATGCAATCAGTTGACAGAGACACAAGTT
CGCACCCTCTGCGACAAGGCCAAGGAGATTCTCTCCAAGGAGTCCAATGT
GCAGGAGGTAAAATGCCCGGTGACAGTGTGCGGAGATGTCCACGGTCAGT
TTCACGACCTCATGGAGCTCTTCCGGATAGGCGGCAAGTCTCCGGACACC
AACTACCTGTTCATGGGCGACTACGTGGACCGTGGATACTACTCCGTGGA
GACCGTGACCCTTCTGGTGGCCCTGAAGGTTCGCTATCGCGAGCGCATCA
CCATCCTGCGCGGTAACCACGAGTCGCGCCAGATCACACAGGTGTACGGC
TTCTACGACGAGTGCCTGCGCAAGTATGGCAATGCCAACGTTTGGAAGTA
CTTCACGGATCTGTTCGACTACTTGCCACTGACGGCACTCGTCGACGGGC
AGATCTTCTGCCTGCACGGAGGCCTCAGTCCCTCGATCGACAGTCTGGAT
CACATTCGGGCCCTCGATCGCTTGCAGGAGGTTCCGCACGAGGGTCCCAT
GTGCGATCTGCTCTGGTCCGATCCCGATGACAGGGGTGGCTGGGGAATCT
CGCCTCGTGGCGCCGGTTACACCTTTGGCCAGGATATTTCGGAAACCTTT
AACAACACAAACGGCCTGACACTGGTGTCGCGCGCCCATCAGCTGGTGAT
GGAGGGCTACAACTGGTGTCACGATCGCAATGTGGTCACAATATTCTCAG
CGCCAAACTATTGCTACCGCTGTGGCAACCAAGCGGCTCTTATGGAACTG
GATGATTCACTTAAATTTTCATTCCTACAATTTGATCCAGCACCCAGGCG
CGGGAAGCCTCATGTTACGCGAAGAACACCCGATTATTTTCCTTGCAGCT
TT
BO08523.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:26:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7109-PA | 930 | mts-RA | 1..923 | 17..939 | 4590 | 99.8 | Plus |
CG32505-PA | 924 | Pp4-19C-RA | 340..401 | 365..426 | 185 | 91.9 | Plus |
CG32505-PE | 924 | Pp4-19C-RE | 340..401 | 365..426 | 185 | 91.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:13:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mts-RC | 1507 | CG7109-RC | 260..1182 | 17..939 | 4600 | 99.9 | Plus |
mts-RB | 3102 | CG7109-RB | 403..1325 | 17..939 | 4600 | 99.9 | Plus |
mts-RA | 2051 | CG7109-RA | 260..1182 | 17..939 | 4600 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:13:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7830460..7831026 | 117..683 | 2835 | 100 | Plus |
2L | 23513712 | 2L | 7831467..7831659 | 681..873 | 965 | 100 | Plus |
2L | 23513712 | 2L | 7828052..7828154 | 17..119 | 515 | 100 | Plus |
X | 23542271 | X | 20422199..20422708 | 679..170 | 510 | 73.3 | Minus |
X | 23542271 | X | 6372311..6372515 | 452..248 | 365 | 78.5 | Minus |
2L | 23513712 | 2L | 7831734..7831799 | 874..939 | 315 | 98.5 | Plus |
X | 23542271 | X | 16558837..16558960 | 290..167 | 200 | 77.4 | Minus |
X | 23542271 | X | 16567436..16567559 | 290..167 | 185 | 76.6 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:13:20 has no hits.
BO08523.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:49:24 Download gff for
BO08523.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mts-PA | 1..930 | 17..947 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:45:02 Download gff for
BO08523.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7109-PA | 1..930 | 17..947 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:30:10 Download gff for
BO08523.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mts-RA | 258..1192 | 13..952 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:56:06 Download gff for
BO08523.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mts-RA | 258..1192 | 13..952 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:56:06 Download gff for
BO08523.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7828050..7828153 | 13..118 | 98 | -> | Plus |
2L | 7830462..7831025 | 119..682 | 100 | -> | Plus |
2L | 7831469..7831659 | 683..873 | 100 | -> | Plus |
2L | 7831734..7831809 | 874..952 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:30:10 Download gff for
BO08523.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7828050..7828153 | 13..118 | 98 | -> | Plus |
arm_2L | 7830462..7831025 | 119..682 | 100 | -> | Plus |
arm_2L | 7831469..7831659 | 683..873 | 100 | -> | Plus |
arm_2L | 7831734..7831809 | 874..952 | 92 | | Plus |
BO08523.complete Sequence
961 bp (961 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631225
> BO08523.complete
GAAGTTATCAGTCGACATGGAGGATAAAGCAACAACAAAAGATCTTGATC
AATGGATTGAGCAGTTGAACGAATGCAATCAGTTGACAGAGACACAAGTT
CGCACCCTCTGCGACAAGGCCAAGGAGATTCTCTCCAAGGAGTCCAATGT
GCAGGAGGTAAAATGCCCGGTGACAGTGTGCGGAGATGTCCACGGTCAGT
TTCACGACCTCATGGAGCTCTTCCGGATAGGCGGCAAGTCTCCGGACACC
AACTACCTGTTCATGGGCGACTACGTGGACCGTGGATACTACTCCGTGGA
GACCGTGACCCTTCTGGTGGCCCTGAAGGTTCGCTATCGCGAGCGCATCA
CCATCCTGCGCGGTAACCACGAGTCGCGCCAGATCACACAGGTGTACGGC
TTCTACGACGAGTGCCTGCGCAAGTATGGCAATGCCAACGTTTGGAAGTA
CTTCACGGATCTGTTCGACTACTTGCCACTGACGGCACTCGTCGACGGGC
AGATCTTCTGCCTGCACGGAGGCCTCAGTCCCTCGATCGACAGTCTGGAT
CACATTCGGGCCCTCGATCGCTTGCAGGAGGTTCCGCACGAGGGTCCCAT
GTGCGATCTGCTCTGGTCCGATCCCGATGACAGGGGTGGCTGGGGAATCT
CGCCTCGTGGCGCCGGTTACACCTTTGGCCAGGATATTTCGGAAACCTTT
AACAACACAAACGGCCTGACACTGGTGTCGCGCGCCCATCAGCTGGTGAT
GGAGGGCTACAACTGGTGTCACGATCGCAATGTGGTCACAATATTCTCAG
CGCCAAACTATTGCTACCGCTGTGGCAACCAAGCGGCTCTTATGGAACTG
GATGATTCACTTAAATTTTCATTCCTACAATTTGATCCAGCACCCAGGCG
CGGGGAGCCTCATGTTACGCGAAGAACACCCGATTATTTCCTTGCAAGCT
TTCTAGACCAT
BO08523.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:14:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mts-RC | 930 | CG7109-PC | 1..927 | 17..943 | 4635 | 100 | Plus |
mts-RB | 930 | CG7109-PB | 1..927 | 17..943 | 4635 | 100 | Plus |
mts-RA | 930 | CG7109-PA | 1..927 | 17..943 | 4635 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:14:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mts-RC | 1507 | CG7109-RC | 260..1186 | 17..943 | 4635 | 100 | Plus |
mts-RB | 3102 | CG7109-RB | 403..1329 | 17..943 | 4635 | 100 | Plus |
mts-RA | 2051 | CG7109-RA | 260..1186 | 17..943 | 4635 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:14:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7830460..7831026 | 117..683 | 2835 | 100 | Plus |
2L | 23513712 | 2L | 7831467..7831659 | 681..873 | 965 | 100 | Plus |
2L | 23513712 | 2L | 7828052..7828154 | 17..119 | 515 | 100 | Plus |
X | 23542271 | X | 20422199..20422708 | 679..170 | 510 | 73.3 | Minus |
X | 23542271 | X | 6372311..6372515 | 452..248 | 365 | 78.5 | Minus |
2L | 23513712 | 2L | 7831734..7831803 | 874..943 | 350 | 100 | Plus |
X | 23542271 | X | 16558837..16558960 | 290..167 | 200 | 77.4 | Minus |
X | 23542271 | X | 16567436..16567559 | 290..167 | 185 | 76.6 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:14:37 has no hits.
BO08523.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:11:43 Download gff for
BO08523.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mts-RA | 1..930 | 17..947 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:32:33 Download gff for
BO08523.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mts-RA | 308..1242 | 13..950 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:28 Download gff for
BO08523.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mts-RA | 260..1186 | 17..945 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:11:44 Download gff for
BO08523.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mts-RA | 308..1242 | 13..950 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:14:11 Download gff for
BO08523.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mts-RA | 260..1186 | 17..945 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:14:11 Download gff for
BO08523.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7828052..7828153 | 17..118 | 100 | -> | Plus |
2L | 7830462..7831025 | 119..682 | 100 | -> | Plus |
2L | 7831469..7831659 | 683..873 | 100 | -> | Plus |
2L | 7831734..7831803 | 874..945 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:28 Download gff for
BO08523.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7828052..7828153 | 17..118 | 100 | -> | Plus |
arm_2L | 7830462..7831025 | 119..682 | 100 | -> | Plus |
arm_2L | 7831469..7831659 | 683..873 | 100 | -> | Plus |
arm_2L | 7831734..7831803 | 874..945 | 97 | | Plus |
BO08523.pep Sequence
Translation from 16 to 961
> BO08523.pep
MEDKATTKDLDQWIEQLNECNQLTETQVRTLCDKAKEILSKESNVQEVKC
PVTVCGDVHGQFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLL
VALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLF
DYLPLTALVDGQIFCLHGGLSPSIDSLDHIRALDRLQEVPHEGPMCDLLW
SDPDDRGGWGISPRGAGYTFGQDISETFNNTNGLTLVSRAHQLVMEGYNW
CHDRNVVTIFSAPNYCYRCGNQAALMELDDSLKFSFLQFDPAPRRGEPHV
TRRTPDYFLASFLDH
BO08523.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:13:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mts-PC | 309 | CG7109-PC | 1..309 | 1..309 | 1684 | 100 | Plus |
mts-PB | 309 | CG7109-PB | 1..309 | 1..309 | 1684 | 100 | Plus |
mts-PA | 309 | CG7109-PA | 1..309 | 1..309 | 1684 | 100 | Plus |
Pp4-19C-PH | 307 | CG32505-PH | 6..307 | 9..309 | 1091 | 64.4 | Plus |
Pp4-19C-PG | 307 | CG32505-PG | 6..307 | 9..309 | 1091 | 64.4 | Plus |