Clone BO08529 Report

Search the DGRC for BO08529

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:85
Well:29
Vector:pDNR-Dual
Associated Gene/TranscriptCG11504-RA
Protein status:BO08529.pep: validated full length
Sequenced Size:1264

Clone Sequence Records

BO08529.3prime Sequence

895 bp (894 high quality bases) assembled on 2006-01-06

> BO08529.3prime
ATGGTCTAGAAAGCTTGCTTTCGGGGCTATTTCGGCCATGCTAGCCTCGA
AGATGGCCGTGTTGATGCGGTGCTTGAGGGCGACAAGCACCTCCCGATTG
CTGATGGCGCGCATCTCGTTGGCCACGTACTCTCCATACGTTGCAAACTC
GTCGCGCGCTGGCGGCAGGCTGACAATGGTGGGCGGAGGTGGACTGGGGA
TGGCTTGGGCCTGGGCTGGTTTGGGCGGCGTGTTCACCTTGGGCAAGCGC
AAGTTACTCATGGTTATTCCGGGCGAGGTGGTCAGCACACTGCTGGCTGT
GCCATTGGCACTGCTTTCCAGTGCGGGGGACAGAATGGAGGTGGTGTTGT
GCGACGCTGGACTGGCTTCGTAGTACATGCGTTTGACCGGCGGCGGATGC
AGTTGCGTGTGCTCCTCAAAGTAGCTATCCTCCTGCCCACTCGACGTGTC
CCGCCGCTGGATCTTAATGATTCGTGTGGGCATTACGTGCACTGAGCTGC
TGCCCGTGCTTTGGGTTGGTGTGGTCTGGTAGTGCAGTTCACCGCTCTCG
TTGGCCTGGAAGCTGACGGCTTCCACGGCGTTGCCCTGGTGGTGCAGGTC
CATCAGCGTCTGATGATGATTCTCCAGCGGCTCCGTCTCTTCCTGTTCGT
TGAGGCTTACAAAGCGGACGCTCATCTCTTTCGCCTGCTTAGGCTTGACT
TCGCCCTCCTCTAGCTCCGACTCATCAATGTCATCCACGTCTTTGGTTGT
CTCCTCGATAAGTTTCTCCAGCTCTTGGGCCCGACTGCTGGCGTGGTTCT
TGCGGAGGTACTCCTCGTTCATGTTGGCGTTCGTGTTGCTGTTGTGATTG
GCCGGCGTGCTGCTGTCGCTGTTATGATCGGCGGTGACCTCGCCC

BO08529.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:26:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG11504-PB 1233 CG11504-RB 354..1230 895..19 4385 100 Minus
CG11504-PA 1233 CG11504-RA 354..1230 895..19 4385 100 Minus
CG11504-PC 1233 CG11504-RC 354..1230 895..19 4385 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:32:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG11504-RC 1788 CG11504-RC 733..1609 895..19 4385 100 Minus
CG11504-RA 1792 CG11504-RA 737..1613 895..19 4385 100 Minus
CG11504-RB 1856 CG11504-RB 801..1677 895..19 4385 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:32:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29998700..29999576 895..19 4385 100 Minus
Blast to na_te.dros performed 2015-02-10 23:32:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2366..2456 875..785 122 59.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2350..2438 873..781 120 67.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2359..2442 873..787 120 65.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2390 869..785 109 61.6 Minus

BO08529.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:49:32 Download gff for BO08529.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11504-PA 354..1233 18..895 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:45:15 Download gff for BO08529.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11504-PC 354..1233 18..895 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:33:46 Download gff for BO08529.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11504-RB 801..1683 11..895 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:03:32 Download gff for BO08529.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11504-RB 801..1683 11..895 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:03:32 Download gff for BO08529.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 29998700..29999582 11..895 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:33:46 Download gff for BO08529.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25824422..25825304 11..895 99   Minus

BO08529.5prime Sequence

914 bp (823 high quality bases) assembled on 2006-01-06

> BO08529.5prime
GAAGTTATCAGTCGACATGGAGTGGACGCGCGAGAAGACGCTGCAGCTGA
TCAGTGAGTACCGCAGCCGACGCGGGCTGTGGGACATGACTTGCGACGAG
TACCGGAAGAAGGACGTCAAGCAGCGGCTCTTGAACGAAGTCAGCCAAGT
GCTGGGCGGGAACATCCCGATCAACGAGCTGGAGAAGAAGTTCCACACGC
TGCGCACGCAGTACCACCGCGAGATCAGTCGCATGAAACGCAAGGAGCCC
TACAACTCCAAGTGGTTTGGCTTCAAGAACCTGGTGTTTCTCAGCTCGCC
CTACGCCTGCCGCTCCACAAAGGGTCGCCTGAAGGCGGATCTGCAGGGCG
ACGAGCGAAAGTTTGTCCTGGGCGAGGTCACCGCCGATCATAACAGCGAC
AGCAGCACGCCGGCCAATCACAACAGCAACACGAACGCCAACATGAACGA
GGAGTACCTCCGCAAGAACCACGCCAGCAGTCGGGCCCAAGAGCTGGAGA
AACTTATCGAGGAGACAACCAAAGACGTGGATGACATTGATGAGTCGGAG
CTAGAGGAGGGCGAAGTCAAGCCTAAGCAGGCGAAAGAGATGAGCGTCCG
CTTTGTAAGCCTCAACGAACAGGAAGAGACGGAGCCGCTGGAGAATCATC
ATCAGACGCTGATGGACCTGCACCACCAGGGCAACGCCGTGGAAGCCGTC
AGCTTCCAGGCCAACGAGAGCGGTGAACTGCACTACCAGACCACACCAAC
CCAAAGCACGGGCAGCAGCTCAGTGCACGTAATGCCCACACGAATCATTA
AGATCCAGCGGCGGGACACGTCGAGTGGGCAGGAGGATAGCTACTTTGAG
GAGCACACGCAACTGCATCCGCCGCCGGGTCAACGCATGTACTACGAAGC
CAGTCCAGCGTCGC

BO08529.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:26:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG11504-PB 1233 CG11504-RB 1..862 17..878 4310 100 Plus
CG11504-PA 1233 CG11504-RA 1..862 17..878 4310 100 Plus
CG11504-PC 1233 CG11504-RC 1..862 17..878 4310 100 Plus
CG11504-PB 1233 CG11504-RB 866..898 882..914 165 100 Plus
CG11504-PA 1233 CG11504-RA 866..898 882..914 165 100 Plus
CG11504-PC 1233 CG11504-RC 866..898 882..914 165 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:47:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG11504-RC 1788 CG11504-RC 380..1277 17..914 4445 99.8 Plus
CG11504-RA 1792 CG11504-RA 384..1281 17..914 4445 99.8 Plus
CG11504-RB 1856 CG11504-RB 448..1345 17..914 4445 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:47:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29998347..29999244 17..914 4445 99.7 Plus
Blast to na_te.dros performed 2015-02-12 05:47:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2366..2456 390..480 122 59.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2350..2438 392..484 120 67.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2359..2442 392..478 120 65.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2390 396..480 109 61.6 Plus

BO08529.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:49:34 Download gff for BO08529.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11504-PA 1..898 17..914 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:45:17 Download gff for BO08529.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11504-PC 1..898 17..914 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:59:10 Download gff for BO08529.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11504-RB 448..1345 17..914 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:53:20 Download gff for BO08529.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11504-RB 448..1345 17..914 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:53:20 Download gff for BO08529.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 29998347..29999244 17..914 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:59:10 Download gff for BO08529.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25824069..25824966 17..914 99   Plus

BO08529.complete Sequence

1264 bp (1264 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ631226

> BO08529.complete
GAAGTTATCAGTCGACATGGAGTGGACGCGCGAGAAGACGCTGCAGCTGA
TCAGTGAGTACCGCAGCCGACGCGGGCTGTGGGACATGACTTGCGACGAG
TACCGGAAGAAGGACGTCAAGCAGCGGCTCTTGAACGAAGTCAGCCAAGT
GCTGGGCGGGAACATCCCGATCAACGAGCTGGAGAAGAAGTTCCACACGC
TGCGCACGCAGTACCACCGCGAGATCAGTCGCATGAAACGCAAGGAGCCC
TACAACTCCAAGTGGTTTGGCTTCAAGAACCTGGTGTTTCTCAGCTCGCC
CTACGCCTGCCGCTCCACAAAGGGTCGCCTGAAGGCGGATCTGCAGGGCG
ACGAGCGAAAGTTTGTCCTGGGCGAGGTCACCGCCGATCATAACAGCGAC
AGCAGCACGCCGGCCAATCACAACAGCAACACGAACGCCAACATGAACGA
GGAGTACCTCCGCAAGAACCACGCCAGCAGTCGGGCCCAAGAGCTGGAGA
AACTTATCGAGGAGACAACCAAAGACGTGGATGACATTGATGAGTCGGAG
CTAGAGGAGGGCGAAGTCAAGCCTAAGCAGGCGAAAGAGATGAGCGTCCG
CTTTGTAAGCCTCAACGAACAGGAAGAGACGGAGCCGCTGGAGAATCATC
ATCAGACGCTGATGGACCTGCACCACCAGGGCAACGCCGTGGAAGCCGTC
AGCTTCCAGGCCAACGAGAGCGGTGAACTGCACTACCAGACCACACCAAC
CCAAAGCACGGGCAGCAGCTCAGTGCACGTAATGCCCACACGAATCATTA
AGATCCAGCGGCGGGACACGTCGAGTGGGCAGGAGGATAGCTACTTTGAG
GAGCACACGCAACTGCATCCGCCGCCGGTCAAACGCATGTACTACGAAGC
CAGTCCAGCGTCGCACAACACCACCTCCATTCTGTCCCCCGCACTGGAAA
GCAGTGCCAATGGCACAGCCAGCAGTGTGCTGACCACCTCGCCCGGAATA
ACCATGAGTAACTTGCGCTTGCCCAAGGTGAACACGCCGCCCAAACCAGC
CCAGGCCCAAGCCATCCCCAGTCCACCTCCGCCCACCATTGTCAGCCTGC
CGCCAGCGCGCGACGAGTTTGCAACGTATGGAGAGTACGTGGCCAACGAG
ATGCGCGCCATCAGCAATCGGGAGGTGCTTGTCGCCCTCAAGCACCGCAT
CAACACGGCCATCTTCGAGGCTAGCATGGCCGAAATAGCCCCGAAAGCAA
GCTTTCTAGACCAT

BO08529.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:39:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG11504-RC 1233 CG11504-PC 1..1230 17..1246 6150 100 Plus
CG11504-RA 1233 CG11504-PA 1..1230 17..1246 6150 100 Plus
CG11504-RB 1233 CG11504-PB 1..1230 17..1246 6150 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:39:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG11504-RC 1788 CG11504-RC 380..1609 17..1246 6150 100 Plus
CG11504-RA 1792 CG11504-RA 384..1613 17..1246 6150 100 Plus
CG11504-RB 1856 CG11504-RB 448..1677 17..1246 6150 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:39:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29998347..29999576 17..1246 6150 100 Plus
Blast to na_te.dros performed 2014-11-28 00:39:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2366..2456 390..480 122 59.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2350..2438 392..484 120 67.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2359..2442 392..478 120 65.9 Plus

BO08529.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:11:45 Download gff for BO08529.complete
Subject Subject Range Query Range Percent Splice Strand
CG11504-RC 1..1233 17..1247 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:32:34 Download gff for BO08529.complete
Subject Subject Range Query Range Percent Splice Strand
CG11504-RC 483..1718 17..1254 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:56:44 Download gff for BO08529.complete
Subject Subject Range Query Range Percent Splice Strand
CG11504-RB 448..1677 17..1248 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:11:45 Download gff for BO08529.complete
Subject Subject Range Query Range Percent Splice Strand
CG11504-RC 483..1718 17..1254 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:24:13 Download gff for BO08529.complete
Subject Subject Range Query Range Percent Splice Strand
CG11504-RB 448..1677 17..1248 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:24:13 Download gff for BO08529.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29998347..29999576 17..1248 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:56:44 Download gff for BO08529.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25824069..25825298 17..1248 99   Plus

BO08529.pep Sequence

Translation from 16 to 1264

> BO08529.pep
MEWTREKTLQLISEYRSRRGLWDMTCDEYRKKDVKQRLLNEVSQVLGGNI
PINELEKKFHTLRTQYHREISRMKRKEPYNSKWFGFKNLVFLSSPYACRS
TKGRLKADLQGDERKFVLGEVTADHNSDSSTPANHNSNTNANMNEEYLRK
NHASSRAQELEKLIEETTKDVDDIDESELEEGEVKPKQAKEMSVRFVSLN
EQEETEPLENHHQTLMDLHHQGNAVEAVSFQANESGELHYQTTPTQSTGS
SSVHVMPTRIIKIQRRDTSSGQEDSYFEEHTQLHPPPVKRMYYEASPASH
NTTSILSPALESSANGTASSVLTTSPGITMSNLRLPKVNTPPKPAQAQAI
PSPPPPTIVSLPPARDEFATYGEYVANEMRAISNREVLVALKHRINTAIF
EASMAEIAPKASFLDH

BO08529.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:13:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG11504-PC 410 CG11504-PC 1..410 1..410 2124 100 Plus
CG11504-PA 410 CG11504-PA 1..410 1..410 2124 100 Plus
CG11504-PB 410 CG11504-PB 1..410 1..410 2124 100 Plus