Clone Sequence Records
BO08529.3prime Sequence
895 bp (894 high quality bases) assembled on 2006-01-06
> BO08529.3prime
ATGGTCTAGAAAGCTTGCTTTCGGGGCTATTTCGGCCATGCTAGCCTCGA
AGATGGCCGTGTTGATGCGGTGCTTGAGGGCGACAAGCACCTCCCGATTG
CTGATGGCGCGCATCTCGTTGGCCACGTACTCTCCATACGTTGCAAACTC
GTCGCGCGCTGGCGGCAGGCTGACAATGGTGGGCGGAGGTGGACTGGGGA
TGGCTTGGGCCTGGGCTGGTTTGGGCGGCGTGTTCACCTTGGGCAAGCGC
AAGTTACTCATGGTTATTCCGGGCGAGGTGGTCAGCACACTGCTGGCTGT
GCCATTGGCACTGCTTTCCAGTGCGGGGGACAGAATGGAGGTGGTGTTGT
GCGACGCTGGACTGGCTTCGTAGTACATGCGTTTGACCGGCGGCGGATGC
AGTTGCGTGTGCTCCTCAAAGTAGCTATCCTCCTGCCCACTCGACGTGTC
CCGCCGCTGGATCTTAATGATTCGTGTGGGCATTACGTGCACTGAGCTGC
TGCCCGTGCTTTGGGTTGGTGTGGTCTGGTAGTGCAGTTCACCGCTCTCG
TTGGCCTGGAAGCTGACGGCTTCCACGGCGTTGCCCTGGTGGTGCAGGTC
CATCAGCGTCTGATGATGATTCTCCAGCGGCTCCGTCTCTTCCTGTTCGT
TGAGGCTTACAAAGCGGACGCTCATCTCTTTCGCCTGCTTAGGCTTGACT
TCGCCCTCCTCTAGCTCCGACTCATCAATGTCATCCACGTCTTTGGTTGT
CTCCTCGATAAGTTTCTCCAGCTCTTGGGCCCGACTGCTGGCGTGGTTCT
TGCGGAGGTACTCCTCGTTCATGTTGGCGTTCGTGTTGCTGTTGTGATTG
GCCGGCGTGCTGCTGTCGCTGTTATGATCGGCGGTGACCTCGCCC
BO08529.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:26:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11504-PB | 1233 | CG11504-RB | 354..1230 | 895..19 | 4385 | 100 | Minus |
CG11504-PA | 1233 | CG11504-RA | 354..1230 | 895..19 | 4385 | 100 | Minus |
CG11504-PC | 1233 | CG11504-RC | 354..1230 | 895..19 | 4385 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:32:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11504-RC | 1788 | CG11504-RC | 733..1609 | 895..19 | 4385 | 100 | Minus |
CG11504-RA | 1792 | CG11504-RA | 737..1613 | 895..19 | 4385 | 100 | Minus |
CG11504-RB | 1856 | CG11504-RB | 801..1677 | 895..19 | 4385 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:32:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29998700..29999576 | 895..19 | 4385 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 23:32:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2366..2456 | 875..785 | 122 | 59.3 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2350..2438 | 873..781 | 120 | 67.4 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2359..2442 | 873..787 | 120 | 65.9 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2390 | 869..785 | 109 | 61.6 | Minus |
BO08529.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:49:32 Download gff for
BO08529.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11504-PA | 354..1233 | 18..895 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:45:15 Download gff for
BO08529.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11504-PC | 354..1233 | 18..895 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:33:46 Download gff for
BO08529.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11504-RB | 801..1683 | 11..895 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:03:32 Download gff for
BO08529.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11504-RB | 801..1683 | 11..895 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:03:32 Download gff for
BO08529.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29998700..29999582 | 11..895 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:33:46 Download gff for
BO08529.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25824422..25825304 | 11..895 | 99 | | Minus |
BO08529.5prime Sequence
914 bp (823 high quality bases) assembled on 2006-01-06
> BO08529.5prime
GAAGTTATCAGTCGACATGGAGTGGACGCGCGAGAAGACGCTGCAGCTGA
TCAGTGAGTACCGCAGCCGACGCGGGCTGTGGGACATGACTTGCGACGAG
TACCGGAAGAAGGACGTCAAGCAGCGGCTCTTGAACGAAGTCAGCCAAGT
GCTGGGCGGGAACATCCCGATCAACGAGCTGGAGAAGAAGTTCCACACGC
TGCGCACGCAGTACCACCGCGAGATCAGTCGCATGAAACGCAAGGAGCCC
TACAACTCCAAGTGGTTTGGCTTCAAGAACCTGGTGTTTCTCAGCTCGCC
CTACGCCTGCCGCTCCACAAAGGGTCGCCTGAAGGCGGATCTGCAGGGCG
ACGAGCGAAAGTTTGTCCTGGGCGAGGTCACCGCCGATCATAACAGCGAC
AGCAGCACGCCGGCCAATCACAACAGCAACACGAACGCCAACATGAACGA
GGAGTACCTCCGCAAGAACCACGCCAGCAGTCGGGCCCAAGAGCTGGAGA
AACTTATCGAGGAGACAACCAAAGACGTGGATGACATTGATGAGTCGGAG
CTAGAGGAGGGCGAAGTCAAGCCTAAGCAGGCGAAAGAGATGAGCGTCCG
CTTTGTAAGCCTCAACGAACAGGAAGAGACGGAGCCGCTGGAGAATCATC
ATCAGACGCTGATGGACCTGCACCACCAGGGCAACGCCGTGGAAGCCGTC
AGCTTCCAGGCCAACGAGAGCGGTGAACTGCACTACCAGACCACACCAAC
CCAAAGCACGGGCAGCAGCTCAGTGCACGTAATGCCCACACGAATCATTA
AGATCCAGCGGCGGGACACGTCGAGTGGGCAGGAGGATAGCTACTTTGAG
GAGCACACGCAACTGCATCCGCCGCCGGGTCAACGCATGTACTACGAAGC
CAGTCCAGCGTCGC
BO08529.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:26:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11504-PB | 1233 | CG11504-RB | 1..862 | 17..878 | 4310 | 100 | Plus |
CG11504-PA | 1233 | CG11504-RA | 1..862 | 17..878 | 4310 | 100 | Plus |
CG11504-PC | 1233 | CG11504-RC | 1..862 | 17..878 | 4310 | 100 | Plus |
CG11504-PB | 1233 | CG11504-RB | 866..898 | 882..914 | 165 | 100 | Plus |
CG11504-PA | 1233 | CG11504-RA | 866..898 | 882..914 | 165 | 100 | Plus |
CG11504-PC | 1233 | CG11504-RC | 866..898 | 882..914 | 165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:47:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11504-RC | 1788 | CG11504-RC | 380..1277 | 17..914 | 4445 | 99.8 | Plus |
CG11504-RA | 1792 | CG11504-RA | 384..1281 | 17..914 | 4445 | 99.8 | Plus |
CG11504-RB | 1856 | CG11504-RB | 448..1345 | 17..914 | 4445 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:47:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29998347..29999244 | 17..914 | 4445 | 99.7 | Plus |
Blast to na_te.dros performed 2015-02-12 05:47:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2366..2456 | 390..480 | 122 | 59.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2350..2438 | 392..484 | 120 | 67.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2359..2442 | 392..478 | 120 | 65.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2390 | 396..480 | 109 | 61.6 | Plus |
BO08529.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:49:34 Download gff for
BO08529.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11504-PA | 1..898 | 17..914 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:45:17 Download gff for
BO08529.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11504-PC | 1..898 | 17..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:59:10 Download gff for
BO08529.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11504-RB | 448..1345 | 17..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:53:20 Download gff for
BO08529.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11504-RB | 448..1345 | 17..914 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:53:20 Download gff for
BO08529.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29998347..29999244 | 17..914 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:59:10 Download gff for
BO08529.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25824069..25824966 | 17..914 | 99 | | Plus |
BO08529.complete Sequence
1264 bp (1264 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631226
> BO08529.complete
GAAGTTATCAGTCGACATGGAGTGGACGCGCGAGAAGACGCTGCAGCTGA
TCAGTGAGTACCGCAGCCGACGCGGGCTGTGGGACATGACTTGCGACGAG
TACCGGAAGAAGGACGTCAAGCAGCGGCTCTTGAACGAAGTCAGCCAAGT
GCTGGGCGGGAACATCCCGATCAACGAGCTGGAGAAGAAGTTCCACACGC
TGCGCACGCAGTACCACCGCGAGATCAGTCGCATGAAACGCAAGGAGCCC
TACAACTCCAAGTGGTTTGGCTTCAAGAACCTGGTGTTTCTCAGCTCGCC
CTACGCCTGCCGCTCCACAAAGGGTCGCCTGAAGGCGGATCTGCAGGGCG
ACGAGCGAAAGTTTGTCCTGGGCGAGGTCACCGCCGATCATAACAGCGAC
AGCAGCACGCCGGCCAATCACAACAGCAACACGAACGCCAACATGAACGA
GGAGTACCTCCGCAAGAACCACGCCAGCAGTCGGGCCCAAGAGCTGGAGA
AACTTATCGAGGAGACAACCAAAGACGTGGATGACATTGATGAGTCGGAG
CTAGAGGAGGGCGAAGTCAAGCCTAAGCAGGCGAAAGAGATGAGCGTCCG
CTTTGTAAGCCTCAACGAACAGGAAGAGACGGAGCCGCTGGAGAATCATC
ATCAGACGCTGATGGACCTGCACCACCAGGGCAACGCCGTGGAAGCCGTC
AGCTTCCAGGCCAACGAGAGCGGTGAACTGCACTACCAGACCACACCAAC
CCAAAGCACGGGCAGCAGCTCAGTGCACGTAATGCCCACACGAATCATTA
AGATCCAGCGGCGGGACACGTCGAGTGGGCAGGAGGATAGCTACTTTGAG
GAGCACACGCAACTGCATCCGCCGCCGGTCAAACGCATGTACTACGAAGC
CAGTCCAGCGTCGCACAACACCACCTCCATTCTGTCCCCCGCACTGGAAA
GCAGTGCCAATGGCACAGCCAGCAGTGTGCTGACCACCTCGCCCGGAATA
ACCATGAGTAACTTGCGCTTGCCCAAGGTGAACACGCCGCCCAAACCAGC
CCAGGCCCAAGCCATCCCCAGTCCACCTCCGCCCACCATTGTCAGCCTGC
CGCCAGCGCGCGACGAGTTTGCAACGTATGGAGAGTACGTGGCCAACGAG
ATGCGCGCCATCAGCAATCGGGAGGTGCTTGTCGCCCTCAAGCACCGCAT
CAACACGGCCATCTTCGAGGCTAGCATGGCCGAAATAGCCCCGAAAGCAA
GCTTTCTAGACCAT
BO08529.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:39:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11504-RC | 1233 | CG11504-PC | 1..1230 | 17..1246 | 6150 | 100 | Plus |
CG11504-RA | 1233 | CG11504-PA | 1..1230 | 17..1246 | 6150 | 100 | Plus |
CG11504-RB | 1233 | CG11504-PB | 1..1230 | 17..1246 | 6150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:39:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11504-RC | 1788 | CG11504-RC | 380..1609 | 17..1246 | 6150 | 100 | Plus |
CG11504-RA | 1792 | CG11504-RA | 384..1613 | 17..1246 | 6150 | 100 | Plus |
CG11504-RB | 1856 | CG11504-RB | 448..1677 | 17..1246 | 6150 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:39:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29998347..29999576 | 17..1246 | 6150 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 00:39:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2366..2456 | 390..480 | 122 | 59.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2350..2438 | 392..484 | 120 | 67.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2359..2442 | 392..478 | 120 | 65.9 | Plus |
BO08529.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:11:45 Download gff for
BO08529.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11504-RC | 1..1233 | 17..1247 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:32:34 Download gff for
BO08529.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11504-RC | 483..1718 | 17..1254 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:56:44 Download gff for
BO08529.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11504-RB | 448..1677 | 17..1248 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:11:45 Download gff for
BO08529.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11504-RC | 483..1718 | 17..1254 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:24:13 Download gff for
BO08529.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11504-RB | 448..1677 | 17..1248 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:24:13 Download gff for
BO08529.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29998347..29999576 | 17..1248 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:56:44 Download gff for
BO08529.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25824069..25825298 | 17..1248 | 99 | | Plus |
BO08529.pep Sequence
Translation from 16 to 1264
> BO08529.pep
MEWTREKTLQLISEYRSRRGLWDMTCDEYRKKDVKQRLLNEVSQVLGGNI
PINELEKKFHTLRTQYHREISRMKRKEPYNSKWFGFKNLVFLSSPYACRS
TKGRLKADLQGDERKFVLGEVTADHNSDSSTPANHNSNTNANMNEEYLRK
NHASSRAQELEKLIEETTKDVDDIDESELEEGEVKPKQAKEMSVRFVSLN
EQEETEPLENHHQTLMDLHHQGNAVEAVSFQANESGELHYQTTPTQSTGS
SSVHVMPTRIIKIQRRDTSSGQEDSYFEEHTQLHPPPVKRMYYEASPASH
NTTSILSPALESSANGTASSVLTTSPGITMSNLRLPKVNTPPKPAQAQAI
PSPPPPTIVSLPPARDEFATYGEYVANEMRAISNREVLVALKHRINTAIF
EASMAEIAPKASFLDH
BO08529.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:13:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11504-PC | 410 | CG11504-PC | 1..410 | 1..410 | 2124 | 100 | Plus |
CG11504-PA | 410 | CG11504-PA | 1..410 | 1..410 | 2124 | 100 | Plus |
CG11504-PB | 410 | CG11504-PB | 1..410 | 1..410 | 2124 | 100 | Plus |