Clone Sequence Records
BO08530.3prime Sequence
935 bp (819 high quality bases) assembled on 2006-01-06
> BO08530.3prime
ATGGTCTAGAAAGCTTGCAAAACCCCGGAAAATGGAGGTCCTTGACAATG
CAGCGAGGACAACGAGGGGCAACAGCACTGCTGCGGCTTGTGCCCTCCAC
TTGCCAGCCGCATTTTCCGCATCGACGAGTGGAATCGAGCCCATGTTGTG
AATCGGAATTTCTATGTAGTTCTTGTACAAGGTGCGATCGTTCAGCGGCT
GGATGGGTCGGAAATTGTTCTTCAGATGATCATCGTTGGCTGTCAGCAGA
CGGAAGGCATTCAACTGCTTCTCCGTGATGTCAATGGGCGTTGTGAAATC
AATCCAGGTGACCTCCTCACTGCAAGGCGGTGTGGTCAGAGAACCAGTGT
AGCTAAAGTAACTCTCCACGGACTTCGAGATGTACTCGCCCAGTGGAAGT
GGATTGGTCATATTAACGCTCTTGCCTTTGCGGTCAATCTGGGAGAGCAA
GTTGGTGAAGCCCTCATAGCCACCAGTTGATTTGTCGCCCACCTGAAAGA
AGAAGGCCATCACGGCGATGCCGTGATCCTTGTCCAGGGCGCTGGCAAAG
TCCGGATACTCTAGATTCCGCAATACCACGTGCAACTCGGCGGGATAGGC
ACGATTGTTGATCAAATCCTCACTGCCAATCGTATCGTTCTCGCCCCAGT
GAAAGTGGAACTGTTCGAACTGATAGCCCAGAGGAGTTTTCTCCGCCAAA
GGACCACCACGCACACTTGGGATCTCGTCCTCGTTGTAGCTCATCTTCAC
CAGCACCGTGTGACCGTTGTTCGTCATTTGAAGATTGTCGGGCACCACTT
TGAAATTGAAAAACTCCAGCTTGGGAAACTTCTTCTCCACGGCGCTGACC
TGGTCGATGTTTATGGGACTCTGGTGCTTTCCACTGCAGCGGGCGTAATC
CTCGCTCCAGTGCTCGGGTCCATGTCTGCCCTCGT
BO08530.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:26:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6906-PA | 1008 | CAH2-RA | 89..1005 | 935..19 | 4585 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 07:37:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CAH2-RB | 1619 | CG6906-RB | 100..1016 | 935..19 | 4585 | 100 | Minus |
CAH2-RA | 1830 | CG6906-RA | 311..1227 | 935..19 | 4585 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 07:37:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12181706..12182151 | 935..490 | 2230 | 100 | Minus |
3L | 28110227 | 3L | 12182495..12182744 | 268..19 | 1250 | 100 | Minus |
3L | 28110227 | 3L | 12182208..12182437 | 494..265 | 1150 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-01 07:37:51 has no hits.
BO08530.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:49:35 Download gff for
BO08530.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CAH2-PA | 89..1008 | 15..935 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:45:18 Download gff for
BO08530.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6906-PA | 89..1008 | 15..935 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:16:23 Download gff for
BO08530.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CAH2-RA | 311..1232 | 11..935 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:45:24 Download gff for
BO08530.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CAH2-RA | 311..1232 | 11..935 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:45:24 Download gff for
BO08530.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12181706..12182148 | 493..935 | 100 | -> | Minus |
3L | 12182210..12182437 | 265..492 | 100 | -> | Minus |
3L | 12182499..12182749 | 11..264 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:16:23 Download gff for
BO08530.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12174806..12175248 | 493..935 | 100 | -> | Minus |
arm_3L | 12175310..12175537 | 265..492 | 100 | -> | Minus |
arm_3L | 12175599..12175849 | 11..264 | 98 | | Minus |
BO08530.5prime Sequence
818 bp (817 high quality bases) assembled on 2006-01-06
> BO08530.5prime
GAAGTTATCAGTCGACATGAGGAGGTGTCGCAACACCCCGTTCGCAATTG
TCATTGCTCCGATCTTGATTTGTGCTTCTTTGGTCTTGGCCCAAGATTTT
GGCTACGAGGGCAGACATGGACCCGAGCACTGGAGCGAGGATTACGCCCG
CTGCAGTGGAAAGCACCAGAGTCCCATAAACATCGACCAGGTCAGCGCCG
TGGAGAAGAAGTTTCCCAAGCTGGAGTTTTTCAATTTCAAAGTGGTGCCC
GACAATCTTCAAATGACGAACAACGGTCACACGGTGCTGGTGAAGATGAG
CTACAACGAGGACGAGATCCCAAGTGTGCGTGGTGGTCCTTTGGCGGAGA
AAACTCCTCTGGGCTATCAGTTCGAACAGTTCCACTTTCACTGGGGCGAG
AACGATACGATTGGCAGTGAGGATTTGATCAACAATCGTGCCTATCCCGC
CGAGTTGCACGTGGTATTGCGGAATCTAGAGTATCCGGACTTTGCCAGCG
CCCTGGACAAGGATCACGGCATCGCCGTGATGGCCTTCTTCTTTCAGGTG
GGCGACAAATCAACTGGTGGCTATGAGGGCTTCACCAACTTGCTCTCCCA
GATTGACCGCAAAGGCAAGAGCGTTAATATGACCAATCCACTTCCACTGG
GCGAGTACATCTCGAAGTCCGTGGAGAGTTACTTTAGCTACACTGGTTCT
CTGACCACACCGCCTTGCAGTGAGGAGGTCACCTGGATTGATTTCACAAC
GCCCATTGACATCACGGAGAAGCAGTTGAATGCCTTCCGTCTGCTGACAG
CCAACGATGATCATCTGA
BO08530.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:26:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6906-PA | 1008 | CAH2-RA | 1..802 | 17..818 | 4010 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:58:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CAH2-RA | 1830 | CG6906-RA | 222..1024 | 16..818 | 4015 | 100 | Plus |
CAH2-RB | 1619 | CG6906-RB | 70..813 | 75..818 | 3720 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:58:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12181675..12182151 | 74..550 | 2385 | 100 | Plus |
3L | 28110227 | 3L | 12182208..12182437 | 546..775 | 1150 | 100 | Plus |
3L | 28110227 | 3L | 12180097..12180155 | 16..74 | 295 | 100 | Plus |
3L | 28110227 | 3L | 12182495..12182541 | 772..818 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 12:58:30 has no hits.
BO08530.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:49:36 Download gff for
BO08530.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CAH2-PA | 1..801 | 17..817 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:45:20 Download gff for
BO08530.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6906-PA | 1..801 | 17..817 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:28:13 Download gff for
BO08530.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CAH2-RA | 222..1023 | 16..817 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:09:29 Download gff for
BO08530.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CAH2-RA | 222..1023 | 16..817 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:09:29 Download gff for
BO08530.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12180097..12180155 | 16..74 | 100 | -> | Plus |
3L | 12181676..12182148 | 75..547 | 100 | -> | Plus |
3L | 12182210..12182437 | 548..775 | 100 | -> | Plus |
3L | 12182499..12182540 | 776..817 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:28:13 Download gff for
BO08530.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12173197..12173255 | 16..74 | 100 | -> | Plus |
arm_3L | 12174776..12175248 | 75..547 | 100 | -> | Plus |
arm_3L | 12175310..12175537 | 548..775 | 100 | -> | Plus |
arm_3L | 12175599..12175640 | 776..817 | 100 | | Plus |
BO08530.complete Sequence
1039 bp (1039 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631227
> BO08530.complete
GAAGTTATCAGTCGACATGAGGAGGTGTCGCAACACCCCGTTCGCAATTG
TCATTGCTCCGATCTTGATTTGTGCTTCTTTGGTCTTGGCCCAAGATTTT
GGCTACGAGGGCAGACATGGACCCGAGCACTGGAGCGAGGATTACGCCCG
CTGCAGTGGAAAGCACCAGAGTCCCATAAACATCGACCAGGTCAGCGCCG
TGGAGAAGAAGTTTCCCAAGCTGGAGTTTTTCAATTTCAAAGTGGTGCCC
GACAATCTTCAAATGACGAACAACGGTCACACGGTGCTGGTGAAGATGAG
CTACAACGAGGACGAGATCCCAAGTGTGCGTGGTGGTCCTTTGGCGGAGA
AAACTCCTCTGGGCTATCAGTTCGAACAGTTCCACTTTCACTGGGGCGAG
AACGATACGATTGGCAGTGAGGATTTGATCAACAATCGTGCCTATCCCGC
CGAGTTGCACGTGGTATTGCGGAATCTAGAGTATCCGGACTTTGCCAGCG
CCCTGGACAAGGATCACGGCATCGCCGTGATGGCCTTCTTCTTTCAGGTG
GGCGACAAATCAACTGGTGGCTATGAGGGCTTCACCAACTTGCTCTCCCA
GATTGACCGCAAAGGCAAGAGCGTTAATATGACCAATCCACTTCCACTGG
GCGAGTACATCTCGAAGTCCGTGGAGAGTTACTTTAGCTACACTGGTTCT
CTGACCACACCGCCTTGCAGTGAGGAGGTCACCTGGATTGATTTCACAAC
GCCCATTGACATCACGGAGAAGCAGTTGAATGCCTTCCGTCTGCTGACAG
CCAACGATGATCATCTGAAGAACAATTTCCGACCCATCCAGCCGCTGAAC
GATCGCACCTTGTACAAGAACTACATAGAAATTCCGATTCACAACATGGG
CTCGATTCCACTCGTCGATGCGGAAAATGCGGCTGGCAAGTGGAGGGCAC
AAGCCGCAGCAGTGCTGTTGCCCCTCGTTGTCCTCGCTGCATTGTCAAGG
ACCTCCATTTTCCGGGGTTTTGCAAGCTTTCTAGACCAT
BO08530.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:48:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CAH2-RA | 1008 | CG6906-PA | 1..1005 | 17..1021 | 5025 | 100 | Plus |
CAH2-RB | 762 | CG6906-PB | 1..759 | 263..1021 | 3795 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:48:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CAH2-RA | 1830 | CG6906-RA | 222..1227 | 16..1021 | 5030 | 100 | Plus |
CAH2-RB | 1619 | CG6906-RB | 70..1016 | 75..1021 | 4735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:48:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12181675..12182151 | 74..550 | 2385 | 100 | Plus |
3L | 28110227 | 3L | 12182495..12182744 | 772..1021 | 1250 | 100 | Plus |
3L | 28110227 | 3L | 12182208..12182437 | 546..775 | 1150 | 100 | Plus |
3L | 28110227 | 3L | 12180097..12180155 | 16..74 | 295 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:48:10 has no hits.
BO08530.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:11:46 Download gff for
BO08530.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CAH2-RA | 1..1008 | 17..1025 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:32:36 Download gff for
BO08530.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CAH2-RA | 219..1229 | 16..1029 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:28 Download gff for
BO08530.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CAH2-RA | 223..1227 | 17..1023 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:11:46 Download gff for
BO08530.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CAH2-RA | 219..1229 | 16..1029 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:53:08 Download gff for
BO08530.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CAH2-RA | 223..1227 | 17..1023 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:53:08 Download gff for
BO08530.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12180098..12180155 | 17..74 | 100 | -> | Plus |
3L | 12181676..12182148 | 75..547 | 100 | -> | Plus |
3L | 12182210..12182437 | 548..775 | 100 | -> | Plus |
3L | 12182499..12182744 | 776..1023 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:28 Download gff for
BO08530.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12173198..12173255 | 17..74 | 100 | -> | Plus |
arm_3L | 12174776..12175248 | 75..547 | 100 | -> | Plus |
arm_3L | 12175310..12175537 | 548..775 | 100 | -> | Plus |
arm_3L | 12175599..12175844 | 776..1023 | 99 | | Plus |
BO08530.pep Sequence
Translation from 16 to 1039
> BO08530.pep
MRRCRNTPFAIVIAPILICASLVLAQDFGYEGRHGPEHWSEDYARCSGKH
QSPINIDQVSAVEKKFPKLEFFNFKVVPDNLQMTNNGHTVLVKMSYNEDE
IPSVRGGPLAEKTPLGYQFEQFHFHWGENDTIGSEDLINNRAYPAELHVV
LRNLEYPDFASALDKDHGIAVMAFFFQVGDKSTGGYEGFTNLLSQIDRKG
KSVNMTNPLPLGEYISKSVESYFSYTGSLTTPPCSEEVTWIDFTTPIDIT
EKQLNAFRLLTANDDHLKNNFRPIQPLNDRTLYKNYIEIPIHNMGSIPLV
DAENAAGKWRAQAAAVLLPLVVLAALSRTSIFRGFASFLDH
BO08530.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:13:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CAH2-PA | 335 | CG6906-PA | 1..335 | 1..335 | 1776 | 100 | Plus |
CAH2-PB | 253 | CG6906-PB | 1..253 | 83..335 | 1333 | 100 | Plus |
CG6074-PA | 311 | CG6074-PA | 12..284 | 16..283 | 413 | 34.9 | Plus |
CAH1-PA | 270 | CG7820-PA | 1..264 | 24..282 | 387 | 34.9 | Plus |
CG3940-PC | 304 | CG3940-PC | 3..284 | 11..299 | 334 | 31.9 | Plus |