Clone BO08530 Report

Search the DGRC for BO08530

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:85
Well:30
Vector:pDNR-Dual
Associated Gene/TranscriptCAH2-RA
Protein status:BO08530.pep: validated full length
Sequenced Size:1039

Clone Sequence Records

BO08530.3prime Sequence

935 bp (819 high quality bases) assembled on 2006-01-06

> BO08530.3prime
ATGGTCTAGAAAGCTTGCAAAACCCCGGAAAATGGAGGTCCTTGACAATG
CAGCGAGGACAACGAGGGGCAACAGCACTGCTGCGGCTTGTGCCCTCCAC
TTGCCAGCCGCATTTTCCGCATCGACGAGTGGAATCGAGCCCATGTTGTG
AATCGGAATTTCTATGTAGTTCTTGTACAAGGTGCGATCGTTCAGCGGCT
GGATGGGTCGGAAATTGTTCTTCAGATGATCATCGTTGGCTGTCAGCAGA
CGGAAGGCATTCAACTGCTTCTCCGTGATGTCAATGGGCGTTGTGAAATC
AATCCAGGTGACCTCCTCACTGCAAGGCGGTGTGGTCAGAGAACCAGTGT
AGCTAAAGTAACTCTCCACGGACTTCGAGATGTACTCGCCCAGTGGAAGT
GGATTGGTCATATTAACGCTCTTGCCTTTGCGGTCAATCTGGGAGAGCAA
GTTGGTGAAGCCCTCATAGCCACCAGTTGATTTGTCGCCCACCTGAAAGA
AGAAGGCCATCACGGCGATGCCGTGATCCTTGTCCAGGGCGCTGGCAAAG
TCCGGATACTCTAGATTCCGCAATACCACGTGCAACTCGGCGGGATAGGC
ACGATTGTTGATCAAATCCTCACTGCCAATCGTATCGTTCTCGCCCCAGT
GAAAGTGGAACTGTTCGAACTGATAGCCCAGAGGAGTTTTCTCCGCCAAA
GGACCACCACGCACACTTGGGATCTCGTCCTCGTTGTAGCTCATCTTCAC
CAGCACCGTGTGACCGTTGTTCGTCATTTGAAGATTGTCGGGCACCACTT
TGAAATTGAAAAACTCCAGCTTGGGAAACTTCTTCTCCACGGCGCTGACC
TGGTCGATGTTTATGGGACTCTGGTGCTTTCCACTGCAGCGGGCGTAATC
CTCGCTCCAGTGCTCGGGTCCATGTCTGCCCTCGT

BO08530.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:26:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG6906-PA 1008 CAH2-RA 89..1005 935..19 4585 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 07:37:55
Subject Length Description Subject Range Query Range Score Percent Strand
CAH2-RB 1619 CG6906-RB 100..1016 935..19 4585 100 Minus
CAH2-RA 1830 CG6906-RA 311..1227 935..19 4585 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 07:37:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12181706..12182151 935..490 2230 100 Minus
3L 28110227 3L 12182495..12182744 268..19 1250 100 Minus
3L 28110227 3L 12182208..12182437 494..265 1150 100 Minus
Blast to na_te.dros performed on 2015-02-01 07:37:51 has no hits.

BO08530.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:49:35 Download gff for BO08530.3prime
Subject Subject Range Query Range Percent Splice Strand
CAH2-PA 89..1008 15..935 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:45:18 Download gff for BO08530.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6906-PA 89..1008 15..935 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:16:23 Download gff for BO08530.3prime
Subject Subject Range Query Range Percent Splice Strand
CAH2-RA 311..1232 11..935 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:45:24 Download gff for BO08530.3prime
Subject Subject Range Query Range Percent Splice Strand
CAH2-RA 311..1232 11..935 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:45:24 Download gff for BO08530.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 12181706..12182148 493..935 100 -> Minus
3L 12182210..12182437 265..492 100 -> Minus
3L 12182499..12182749 11..264 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:16:23 Download gff for BO08530.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12174806..12175248 493..935 100 -> Minus
arm_3L 12175310..12175537 265..492 100 -> Minus
arm_3L 12175599..12175849 11..264 98   Minus

BO08530.5prime Sequence

818 bp (817 high quality bases) assembled on 2006-01-06

> BO08530.5prime
GAAGTTATCAGTCGACATGAGGAGGTGTCGCAACACCCCGTTCGCAATTG
TCATTGCTCCGATCTTGATTTGTGCTTCTTTGGTCTTGGCCCAAGATTTT
GGCTACGAGGGCAGACATGGACCCGAGCACTGGAGCGAGGATTACGCCCG
CTGCAGTGGAAAGCACCAGAGTCCCATAAACATCGACCAGGTCAGCGCCG
TGGAGAAGAAGTTTCCCAAGCTGGAGTTTTTCAATTTCAAAGTGGTGCCC
GACAATCTTCAAATGACGAACAACGGTCACACGGTGCTGGTGAAGATGAG
CTACAACGAGGACGAGATCCCAAGTGTGCGTGGTGGTCCTTTGGCGGAGA
AAACTCCTCTGGGCTATCAGTTCGAACAGTTCCACTTTCACTGGGGCGAG
AACGATACGATTGGCAGTGAGGATTTGATCAACAATCGTGCCTATCCCGC
CGAGTTGCACGTGGTATTGCGGAATCTAGAGTATCCGGACTTTGCCAGCG
CCCTGGACAAGGATCACGGCATCGCCGTGATGGCCTTCTTCTTTCAGGTG
GGCGACAAATCAACTGGTGGCTATGAGGGCTTCACCAACTTGCTCTCCCA
GATTGACCGCAAAGGCAAGAGCGTTAATATGACCAATCCACTTCCACTGG
GCGAGTACATCTCGAAGTCCGTGGAGAGTTACTTTAGCTACACTGGTTCT
CTGACCACACCGCCTTGCAGTGAGGAGGTCACCTGGATTGATTTCACAAC
GCCCATTGACATCACGGAGAAGCAGTTGAATGCCTTCCGTCTGCTGACAG
CCAACGATGATCATCTGA

BO08530.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:26:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG6906-PA 1008 CAH2-RA 1..802 17..818 4010 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:58:30
Subject Length Description Subject Range Query Range Score Percent Strand
CAH2-RA 1830 CG6906-RA 222..1024 16..818 4015 100 Plus
CAH2-RB 1619 CG6906-RB 70..813 75..818 3720 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:58:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12181675..12182151 74..550 2385 100 Plus
3L 28110227 3L 12182208..12182437 546..775 1150 100 Plus
3L 28110227 3L 12180097..12180155 16..74 295 100 Plus
3L 28110227 3L 12182495..12182541 772..818 235 100 Plus
Blast to na_te.dros performed on 2015-02-11 12:58:30 has no hits.

BO08530.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:49:36 Download gff for BO08530.5prime
Subject Subject Range Query Range Percent Splice Strand
CAH2-PA 1..801 17..817 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:45:20 Download gff for BO08530.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6906-PA 1..801 17..817 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:28:13 Download gff for BO08530.5prime
Subject Subject Range Query Range Percent Splice Strand
CAH2-RA 222..1023 16..817 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:09:29 Download gff for BO08530.5prime
Subject Subject Range Query Range Percent Splice Strand
CAH2-RA 222..1023 16..817 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:09:29 Download gff for BO08530.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 12180097..12180155 16..74 100 -> Plus
3L 12181676..12182148 75..547 100 -> Plus
3L 12182210..12182437 548..775 100 -> Plus
3L 12182499..12182540 776..817 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:28:13 Download gff for BO08530.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12173197..12173255 16..74 100 -> Plus
arm_3L 12174776..12175248 75..547 100 -> Plus
arm_3L 12175310..12175537 548..775 100 -> Plus
arm_3L 12175599..12175640 776..817 100   Plus

BO08530.complete Sequence

1039 bp (1039 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ631227

> BO08530.complete
GAAGTTATCAGTCGACATGAGGAGGTGTCGCAACACCCCGTTCGCAATTG
TCATTGCTCCGATCTTGATTTGTGCTTCTTTGGTCTTGGCCCAAGATTTT
GGCTACGAGGGCAGACATGGACCCGAGCACTGGAGCGAGGATTACGCCCG
CTGCAGTGGAAAGCACCAGAGTCCCATAAACATCGACCAGGTCAGCGCCG
TGGAGAAGAAGTTTCCCAAGCTGGAGTTTTTCAATTTCAAAGTGGTGCCC
GACAATCTTCAAATGACGAACAACGGTCACACGGTGCTGGTGAAGATGAG
CTACAACGAGGACGAGATCCCAAGTGTGCGTGGTGGTCCTTTGGCGGAGA
AAACTCCTCTGGGCTATCAGTTCGAACAGTTCCACTTTCACTGGGGCGAG
AACGATACGATTGGCAGTGAGGATTTGATCAACAATCGTGCCTATCCCGC
CGAGTTGCACGTGGTATTGCGGAATCTAGAGTATCCGGACTTTGCCAGCG
CCCTGGACAAGGATCACGGCATCGCCGTGATGGCCTTCTTCTTTCAGGTG
GGCGACAAATCAACTGGTGGCTATGAGGGCTTCACCAACTTGCTCTCCCA
GATTGACCGCAAAGGCAAGAGCGTTAATATGACCAATCCACTTCCACTGG
GCGAGTACATCTCGAAGTCCGTGGAGAGTTACTTTAGCTACACTGGTTCT
CTGACCACACCGCCTTGCAGTGAGGAGGTCACCTGGATTGATTTCACAAC
GCCCATTGACATCACGGAGAAGCAGTTGAATGCCTTCCGTCTGCTGACAG
CCAACGATGATCATCTGAAGAACAATTTCCGACCCATCCAGCCGCTGAAC
GATCGCACCTTGTACAAGAACTACATAGAAATTCCGATTCACAACATGGG
CTCGATTCCACTCGTCGATGCGGAAAATGCGGCTGGCAAGTGGAGGGCAC
AAGCCGCAGCAGTGCTGTTGCCCCTCGTTGTCCTCGCTGCATTGTCAAGG
ACCTCCATTTTCCGGGGTTTTGCAAGCTTTCTAGACCAT

BO08530.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:48:11
Subject Length Description Subject Range Query Range Score Percent Strand
CAH2-RA 1008 CG6906-PA 1..1005 17..1021 5025 100 Plus
CAH2-RB 762 CG6906-PB 1..759 263..1021 3795 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:48:13
Subject Length Description Subject Range Query Range Score Percent Strand
CAH2-RA 1830 CG6906-RA 222..1227 16..1021 5030 100 Plus
CAH2-RB 1619 CG6906-RB 70..1016 75..1021 4735 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:48:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12181675..12182151 74..550 2385 100 Plus
3L 28110227 3L 12182495..12182744 772..1021 1250 100 Plus
3L 28110227 3L 12182208..12182437 546..775 1150 100 Plus
3L 28110227 3L 12180097..12180155 16..74 295 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:48:10 has no hits.

BO08530.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:11:46 Download gff for BO08530.complete
Subject Subject Range Query Range Percent Splice Strand
CAH2-RA 1..1008 17..1025 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:32:36 Download gff for BO08530.complete
Subject Subject Range Query Range Percent Splice Strand
CAH2-RA 219..1229 16..1029 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:28 Download gff for BO08530.complete
Subject Subject Range Query Range Percent Splice Strand
CAH2-RA 223..1227 17..1023 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:11:46 Download gff for BO08530.complete
Subject Subject Range Query Range Percent Splice Strand
CAH2-RA 219..1229 16..1029 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:53:08 Download gff for BO08530.complete
Subject Subject Range Query Range Percent Splice Strand
CAH2-RA 223..1227 17..1023 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:53:08 Download gff for BO08530.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12180098..12180155 17..74 100 -> Plus
3L 12181676..12182148 75..547 100 -> Plus
3L 12182210..12182437 548..775 100 -> Plus
3L 12182499..12182744 776..1023 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:28 Download gff for BO08530.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12173198..12173255 17..74 100 -> Plus
arm_3L 12174776..12175248 75..547 100 -> Plus
arm_3L 12175310..12175537 548..775 100 -> Plus
arm_3L 12175599..12175844 776..1023 99   Plus

BO08530.pep Sequence

Translation from 16 to 1039

> BO08530.pep
MRRCRNTPFAIVIAPILICASLVLAQDFGYEGRHGPEHWSEDYARCSGKH
QSPINIDQVSAVEKKFPKLEFFNFKVVPDNLQMTNNGHTVLVKMSYNEDE
IPSVRGGPLAEKTPLGYQFEQFHFHWGENDTIGSEDLINNRAYPAELHVV
LRNLEYPDFASALDKDHGIAVMAFFFQVGDKSTGGYEGFTNLLSQIDRKG
KSVNMTNPLPLGEYISKSVESYFSYTGSLTTPPCSEEVTWIDFTTPIDIT
EKQLNAFRLLTANDDHLKNNFRPIQPLNDRTLYKNYIEIPIHNMGSIPLV
DAENAAGKWRAQAAAVLLPLVVLAALSRTSIFRGFASFLDH

BO08530.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:13:47
Subject Length Description Subject Range Query Range Score Percent Strand
CAH2-PA 335 CG6906-PA 1..335 1..335 1776 100 Plus
CAH2-PB 253 CG6906-PB 1..253 83..335 1333 100 Plus
CG6074-PA 311 CG6074-PA 12..284 16..283 413 34.9 Plus
CAH1-PA 270 CG7820-PA 1..264 24..282 387 34.9 Plus
CG3940-PC 304 CG3940-PC 3..284 11..299 334 31.9 Plus