Clone Sequence Records
BO08535.5prime Sequence
801 bp (800 high quality bases) assembled on 2006-01-06
> BO08535.5prime
GAAGTTATCAGTCGACATGGCATCCCACTGGCCCGAGAACGTTGGCATAC
GCGCCATCGAGATTCTCTTCCCCTCCCAGTACGTGGACCAAACGGAGCTG
GAGACCTTCGATGGTGCCTCCGCGGGCAAGTACACAATTGGCCTGGGCCA
GGCCAAGATGGGCTTCTGCTCGGACCGCGAGGATGTCAACTCTCTCTGCC
TGACGGTTGTGAGCCGCCTGCTGGAGCGGCAACATGTGAAGCACTCGGAG
ATCGGACGACTGGAGGTGGGCACCGAGACCATTGTGGACAAGTCGAAGTC
GGTGAAGTCCGTGCTGATGCAGCTGTTCGCCGAGAGCGGGAACACGGACA
TCGAGGGCATCGACACCACGAACGCCTGTTACGGCGGCACGGCGGCGCTC
TTCAATGCCGTCAATTGGGTGGAATCTTCTAGCTGGGACGGCCGCCTGGC
TTTGGCCGTTTGTGCTGATATCGCCGTGTACGCCAAGGGTGCAGCGCGCC
CAACTGGTGGTGCGGGTGCTGTGGCTATGCTGGTGGGTCCAAATGCGCCG
CTTATCCTCGATCGTGGACTACGCGCAACGCACATGGAGCACGCCTACGA
CTTTTACAAGCCGGACCTCAGCTCCGAATACCCAACGGTAGATGGAAAGC
TCTCTATTCAGTGCTACCTTTCTGCTCTGGACACCTGCTACAGGCTGTAT
CGCAAGAAGTTCGACCAGCAGCAGAAGGATACTTCCAAGCAGCCGGCCAG
CCTGAGCACCTTCGATGCTATCCTATTCCACACACCGTTCTGCAAGTTGG
T
BO08535.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:26:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4311-PA | 1398 | Hmgs-RA | 1..785 | 17..801 | 3925 | 100 | Plus |
CG4311-PC | 1398 | Hmgs-RC | 1..785 | 17..801 | 3925 | 100 | Plus |
CG4311-PB | 1398 | Hmgs-RB | 1..785 | 17..801 | 3925 | 100 | Plus |
CG4311-PD | 1398 | Hmgs-RD | 1..785 | 17..801 | 3925 | 100 | Plus |
CG4311-PE | 1398 | Hmgs-RE | 1..785 | 17..801 | 3925 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:06:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hmgs-RF | 1900 | CG4311-RF | 137..922 | 16..801 | 3930 | 100 | Plus |
Hmgs-RE | 1803 | CG4311-RE | 40..825 | 16..801 | 3930 | 100 | Plus |
Hmgs-RD | 1879 | CG4311-RD | 116..901 | 16..801 | 3930 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:06:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16339479..16340264 | 16..801 | 3930 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 11:06:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 1400..1457 | 295..352 | 110 | 65.5 | Plus |
Dmir\TRIM | 3111 | Dmir\TRIM DMTRIM 3126bp Derived from X59239 (Rel. 35, Last updated, Version 3). | 2430..2467 | 337..374 | 109 | 76.3 | Plus |
BO08535.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:49:47 Download gff for
BO08535.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hmgs-PA | 1..785 | 17..801 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:45:32 Download gff for
BO08535.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4311-PE | 1..785 | 17..801 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:03:35 Download gff for
BO08535.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hmgs-RD | 112..901 | 9..801 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:38:41 Download gff for
BO08535.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hmgs-RD | 112..901 | 9..801 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:38:41 Download gff for
BO08535.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16339475..16340264 | 9..801 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:03:35 Download gff for
BO08535.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12226980..12227769 | 9..801 | 99 | | Plus |
BO08535.3prime Sequence
915 bp (742 high quality bases) assembled on 2006-01-06
> BO08535.3prime
ATGGTCTAGAAAGCTTGCGTGCACCCCATTGCTGATGGTCGGTGTGCGCT
CGTAGGTGCGTCTATGCAGCGCATCCACGTCCTTCAGGTAGTAGGTGCCG
GGAAACAGTGCGGAGATGCTGCCCGTTGGCGTGTAGGGCGCCGCATGGTT
GTTCTTCTCCCGCACCTCCATCAGCGCGGAGAACTGCTCGGGCGCAACCT
TCTCCCGTGAATTCAGCAACGGCTGCACGTAGTCCAGCTGCGAGACGAAC
TTTTCGAAAGCAGCTGCATCCTGGGTCACGCTGATCGAGTACATGGAAGC
AGCCAGTCCGGATCCGTAGGAGAACAAACCAATGCGCTTTCCCACCAGCT
CCTGGGCTGGTCCGCTAATCAACAGAGACACCAAACCGGAGTACACCGAG
GGTGTGTACATATTGCCCACTTGGTTGGCCAGCAGCAGCGATTTCTTGGT
CTTGCTGGCAAAGATGTTGGCGGACTGCGTCATGAAGGCCTTCTCCACAT
CGCGATCAAAGTAGGTGCTCTCCAGGGTAGCGGTATTAAAACGTTCCAGG
TCGGGAAACTGCTTCGTTCGCTCCTCCTCACTGCTCAGCAGGAAATCGTT
GAAGCTCAGGCGACCCACAGATTTTTGCACCAACTTGCAGAACGGTGTGT
GGAATAGGATAGCATCGAAGGTGCTCAGGCTGGCCGGCTGCTTGGAAGTA
TCCTTCTGCTGCTGGTCGAACTTCTTGCGATACAGCCTGTAGCAGGTGTC
CAGAGCAGAAAGGTAGCACTGAATAGAGAGCTTTCCATCTACCGTTGGGT
ATTCGGAGCTGAGGTCCGGCTTGTAAAAGTCGTAGGCGTGCTCCATGTGC
GTTGCGCGTAGTCCACGATCGAGGATAAGCGGCGCATTTGGACCCACCAG
CATAGCCACAGCACC
BO08535.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:26:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4311-PA | 1398 | Hmgs-RA | 499..1395 | 915..19 | 4485 | 100 | Minus |
CG4311-PC | 1398 | Hmgs-RC | 499..1395 | 915..19 | 4485 | 100 | Minus |
CG4311-PB | 1398 | Hmgs-RB | 499..1395 | 915..19 | 4485 | 100 | Minus |
CG4311-PD | 1398 | Hmgs-RD | 499..1395 | 915..19 | 4485 | 100 | Minus |
CG4311-PE | 1398 | Hmgs-RE | 499..1395 | 915..19 | 4485 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:32:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hmgs-RF | 1900 | CG4311-RF | 636..1532 | 915..19 | 4485 | 100 | Minus |
Hmgs-RE | 1803 | CG4311-RE | 539..1435 | 915..19 | 4485 | 100 | Minus |
Hmgs-RD | 1879 | CG4311-RD | 615..1511 | 915..19 | 4485 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:32:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16339978..16340874 | 915..19 | 4485 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:32:49 has no hits.
BO08535.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:49:46 Download gff for
BO08535.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hmgs-PA | 499..1398 | 15..915 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:45:31 Download gff for
BO08535.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4311-PE | 499..1398 | 15..915 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:47:47 Download gff for
BO08535.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hmgs-RD | 615..1514 | 15..915 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:58:15 Download gff for
BO08535.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hmgs-RD | 615..1514 | 15..915 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:58:15 Download gff for
BO08535.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16339978..16340877 | 15..915 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:47:47 Download gff for
BO08535.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12227483..12228382 | 15..915 | 99 | | Minus |
BO08535.complete Sequence
1429 bp (1429 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631228
> BO08535.complete
GAAGTTATCAGTCGACATGGCATCCCACTGGCCCGAGAACGTTGGCATAC
GCGCCATCGAGATTCTCTTCCCCTCCCAGTACGTGGACCAAACGGAGCTG
GAGACCTTCGATGGTGCCTCCGCGGGCAAGTACACAATTGGCCTGGGCCA
GGCCAAGATGGGCTTCTGCTCGGACCGCGAGGATGTCAACTCTCTCTGCC
TGACGGTTGTGAGCCGCCTGCTGGAGCGGCAACATGTGAAGCACTCGGAG
ATCGGACGACTGGAGGTGGGCACCGAGACCATTGTGGACAAGTCGAAGTC
GGTGAAGTCCGTGCTGATGCAGCTGTTCGCCGAGAGCGGGAACACGGACA
TCGAGGGCATCGACACCACGAACGCCTGTTACGGCGGCACGGCGGCGCTC
TTCAATGCCGTCAATTGGGTGGAATCTTCTAGCTGGGACGGCCGCCTGGC
TTTGGCCGTTTGTGCTGATATCGCCGTGTACGCCAAGGGTGCAGCGCGCC
CAACTGGTGGTGCGGGTGCTGTGGCTATGCTGGTGGGTCCAAATGCGCCG
CTTATCCTCGATCGTGGACTACGCGCAACGCACATGGAGCACGCCTACGA
CTTTTACAAGCCGGACCTCAGCTCCGAATACCCAACGGTAGATGGAAAGC
TCTCTATTCAGTGCTACCTTTCTGCTCTGGACACCTGCTACAGGCTGTAT
CGCAAGAAGTTCGACCAGCAGCAGAAGGATACTTCCAAGCAGCCGGCCAG
CCTGAGCACCTTCGATGCTATCCTATTCCACACACCGTTCTGCAAGTTGG
TGCAAAAATCTGTGGGTCGCCTGAGCTTCAACGATTTCCTGCTGAGCAGT
GAGGAGGAGCGAACGAAGCAGTTTCCCGACCTGGAACGTTTTAATACCGC
TACCCTGGAGAGCACCTACTTTGATCGCGATGTGGAGAAGGCCTTCATGA
CGCAGTCCGCCAACATCTTTGCCAGCAAGACCAAGAAATCGCTGCTGCTG
GCCAACCAAGTGGGCAATATGTACACACCCTCGGTGTACTCCGGTTTGGT
GTCTCTGTTGATTAGCGGACCAGCCCAGGAGCTGGTGGGAAAGCGCATTG
GTTTGTTCTCCTACGGATCCGGACTGGCTGCTTCCATGTACTCGATCAGC
GTGACCCAGGATGCAGCTGCTTTCGAAAAGTTCGTCTCGCAGCTGGACTA
CGTGCAGCCGTTGCTGAATTCACGGGAGAAGGTTGCGCCCGAGCAGTTCT
CCGCGCTGATGGAGGTGCGGGAGAAGAACAACCATGCGGCGCCCTACACG
CCAACGGGCAGCATCTCCGCACTGTTTCCCGGCACCTACTACCTGAAGGA
CGTGGATGCGCTGCATAGACGCACCTACGAGCGCACACCGACCATCAGCA
ATGGGGTGCACGCAAGCTTTCTAGACCAT
BO08535.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:51:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hmgs-RF | 1398 | CG4311-PF | 1..1395 | 17..1411 | 6975 | 100 | Plus |
Hmgs-RE | 1398 | CG4311-PE | 1..1395 | 17..1411 | 6975 | 100 | Plus |
Hmgs-RD | 1398 | CG4311-PD | 1..1395 | 17..1411 | 6975 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:51:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hmgs-RF | 1900 | CG4311-RF | 137..1532 | 16..1411 | 6980 | 100 | Plus |
Hmgs-RE | 1803 | CG4311-RE | 40..1435 | 16..1411 | 6980 | 100 | Plus |
Hmgs-RD | 1879 | CG4311-RD | 116..1511 | 16..1411 | 6980 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:51:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16339479..16340874 | 16..1411 | 6980 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:51:21 has no hits.
BO08535.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:11:47 Download gff for
BO08535.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hmgs-RB | 1..1398 | 17..1415 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:32:38 Download gff for
BO08535.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hmgs-RB | 147..1549 | 9..1415 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:21 Download gff for
BO08535.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hmgs-RD | 117..1511 | 17..1413 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:11:47 Download gff for
BO08535.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hmgs-RB | 147..1549 | 9..1415 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:28:39 Download gff for
BO08535.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hmgs-RD | 117..1511 | 17..1413 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:28:39 Download gff for
BO08535.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16339480..16340874 | 17..1413 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:21 Download gff for
BO08535.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12226985..12228379 | 17..1413 | 99 | | Plus |
BO08535.pep Sequence
Translation from 16 to 1429
> BO08535.pep
MASHWPENVGIRAIEILFPSQYVDQTELETFDGASAGKYTIGLGQAKMGF
CSDREDVNSLCLTVVSRLLERQHVKHSEIGRLEVGTETIVDKSKSVKSVL
MQLFAESGNTDIEGIDTTNACYGGTAALFNAVNWVESSSWDGRLALAVCA
DIAVYAKGAARPTGGAGAVAMLVGPNAPLILDRGLRATHMEHAYDFYKPD
LSSEYPTVDGKLSIQCYLSALDTCYRLYRKKFDQQQKDTSKQPASLSTFD
AILFHTPFCKLVQKSVGRLSFNDFLLSSEEERTKQFPDLERFNTATLEST
YFDRDVEKAFMTQSANIFASKTKKSLLLANQVGNMYTPSVYSGLVSLLIS
GPAQELVGKRIGLFSYGSGLAASMYSISVTQDAAAFEKFVSQLDYVQPLL
NSREKVAPEQFSALMEVREKNNHAAPYTPTGSISALFPGTYYLKDVDALH
RRTYERTPTISNGVHASFLDH
BO08535.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:13:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hmgs-PF | 465 | CG4311-PF | 1..465 | 1..465 | 2386 | 100 | Plus |
Hmgs-PE | 465 | CG4311-PE | 1..465 | 1..465 | 2386 | 100 | Plus |
Hmgs-PD | 465 | CG4311-PD | 1..465 | 1..465 | 2386 | 100 | Plus |
Hmgs-PB | 465 | CG4311-PB | 1..465 | 1..465 | 2386 | 100 | Plus |
Hmgs-PC | 465 | CG4311-PC | 1..465 | 1..465 | 2386 | 100 | Plus |