Clone BO08535 Report

Search the DGRC for BO08535

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:85
Well:35
Vector:pDNR-Dual
Associated Gene/TranscriptHmgs-RA
Protein status:BO08535.pep: validated full length
Sequenced Size:1429

Clone Sequence Records

BO08535.5prime Sequence

801 bp (800 high quality bases) assembled on 2006-01-06

> BO08535.5prime
GAAGTTATCAGTCGACATGGCATCCCACTGGCCCGAGAACGTTGGCATAC
GCGCCATCGAGATTCTCTTCCCCTCCCAGTACGTGGACCAAACGGAGCTG
GAGACCTTCGATGGTGCCTCCGCGGGCAAGTACACAATTGGCCTGGGCCA
GGCCAAGATGGGCTTCTGCTCGGACCGCGAGGATGTCAACTCTCTCTGCC
TGACGGTTGTGAGCCGCCTGCTGGAGCGGCAACATGTGAAGCACTCGGAG
ATCGGACGACTGGAGGTGGGCACCGAGACCATTGTGGACAAGTCGAAGTC
GGTGAAGTCCGTGCTGATGCAGCTGTTCGCCGAGAGCGGGAACACGGACA
TCGAGGGCATCGACACCACGAACGCCTGTTACGGCGGCACGGCGGCGCTC
TTCAATGCCGTCAATTGGGTGGAATCTTCTAGCTGGGACGGCCGCCTGGC
TTTGGCCGTTTGTGCTGATATCGCCGTGTACGCCAAGGGTGCAGCGCGCC
CAACTGGTGGTGCGGGTGCTGTGGCTATGCTGGTGGGTCCAAATGCGCCG
CTTATCCTCGATCGTGGACTACGCGCAACGCACATGGAGCACGCCTACGA
CTTTTACAAGCCGGACCTCAGCTCCGAATACCCAACGGTAGATGGAAAGC
TCTCTATTCAGTGCTACCTTTCTGCTCTGGACACCTGCTACAGGCTGTAT
CGCAAGAAGTTCGACCAGCAGCAGAAGGATACTTCCAAGCAGCCGGCCAG
CCTGAGCACCTTCGATGCTATCCTATTCCACACACCGTTCTGCAAGTTGG
T

BO08535.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:26:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG4311-PA 1398 Hmgs-RA 1..785 17..801 3925 100 Plus
CG4311-PC 1398 Hmgs-RC 1..785 17..801 3925 100 Plus
CG4311-PB 1398 Hmgs-RB 1..785 17..801 3925 100 Plus
CG4311-PD 1398 Hmgs-RD 1..785 17..801 3925 100 Plus
CG4311-PE 1398 Hmgs-RE 1..785 17..801 3925 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:06:34
Subject Length Description Subject Range Query Range Score Percent Strand
Hmgs-RF 1900 CG4311-RF 137..922 16..801 3930 100 Plus
Hmgs-RE 1803 CG4311-RE 40..825 16..801 3930 100 Plus
Hmgs-RD 1879 CG4311-RD 116..901 16..801 3930 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:06:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16339479..16340264 16..801 3930 100 Plus
Blast to na_te.dros performed 2015-02-11 11:06:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 1400..1457 295..352 110 65.5 Plus
Dmir\TRIM 3111 Dmir\TRIM DMTRIM 3126bp Derived from X59239 (Rel. 35, Last updated, Version 3). 2430..2467 337..374 109 76.3 Plus

BO08535.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:49:47 Download gff for BO08535.5prime
Subject Subject Range Query Range Percent Splice Strand
Hmgs-PA 1..785 17..801 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:45:32 Download gff for BO08535.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4311-PE 1..785 17..801 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:03:35 Download gff for BO08535.5prime
Subject Subject Range Query Range Percent Splice Strand
Hmgs-RD 112..901 9..801 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:38:41 Download gff for BO08535.5prime
Subject Subject Range Query Range Percent Splice Strand
Hmgs-RD 112..901 9..801 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:38:41 Download gff for BO08535.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 16339475..16340264 9..801 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:03:35 Download gff for BO08535.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12226980..12227769 9..801 99   Plus

BO08535.3prime Sequence

915 bp (742 high quality bases) assembled on 2006-01-06

> BO08535.3prime
ATGGTCTAGAAAGCTTGCGTGCACCCCATTGCTGATGGTCGGTGTGCGCT
CGTAGGTGCGTCTATGCAGCGCATCCACGTCCTTCAGGTAGTAGGTGCCG
GGAAACAGTGCGGAGATGCTGCCCGTTGGCGTGTAGGGCGCCGCATGGTT
GTTCTTCTCCCGCACCTCCATCAGCGCGGAGAACTGCTCGGGCGCAACCT
TCTCCCGTGAATTCAGCAACGGCTGCACGTAGTCCAGCTGCGAGACGAAC
TTTTCGAAAGCAGCTGCATCCTGGGTCACGCTGATCGAGTACATGGAAGC
AGCCAGTCCGGATCCGTAGGAGAACAAACCAATGCGCTTTCCCACCAGCT
CCTGGGCTGGTCCGCTAATCAACAGAGACACCAAACCGGAGTACACCGAG
GGTGTGTACATATTGCCCACTTGGTTGGCCAGCAGCAGCGATTTCTTGGT
CTTGCTGGCAAAGATGTTGGCGGACTGCGTCATGAAGGCCTTCTCCACAT
CGCGATCAAAGTAGGTGCTCTCCAGGGTAGCGGTATTAAAACGTTCCAGG
TCGGGAAACTGCTTCGTTCGCTCCTCCTCACTGCTCAGCAGGAAATCGTT
GAAGCTCAGGCGACCCACAGATTTTTGCACCAACTTGCAGAACGGTGTGT
GGAATAGGATAGCATCGAAGGTGCTCAGGCTGGCCGGCTGCTTGGAAGTA
TCCTTCTGCTGCTGGTCGAACTTCTTGCGATACAGCCTGTAGCAGGTGTC
CAGAGCAGAAAGGTAGCACTGAATAGAGAGCTTTCCATCTACCGTTGGGT
ATTCGGAGCTGAGGTCCGGCTTGTAAAAGTCGTAGGCGTGCTCCATGTGC
GTTGCGCGTAGTCCACGATCGAGGATAAGCGGCGCATTTGGACCCACCAG
CATAGCCACAGCACC

BO08535.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:26:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG4311-PA 1398 Hmgs-RA 499..1395 915..19 4485 100 Minus
CG4311-PC 1398 Hmgs-RC 499..1395 915..19 4485 100 Minus
CG4311-PB 1398 Hmgs-RB 499..1395 915..19 4485 100 Minus
CG4311-PD 1398 Hmgs-RD 499..1395 915..19 4485 100 Minus
CG4311-PE 1398 Hmgs-RE 499..1395 915..19 4485 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:32:50
Subject Length Description Subject Range Query Range Score Percent Strand
Hmgs-RF 1900 CG4311-RF 636..1532 915..19 4485 100 Minus
Hmgs-RE 1803 CG4311-RE 539..1435 915..19 4485 100 Minus
Hmgs-RD 1879 CG4311-RD 615..1511 915..19 4485 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:32:47
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16339978..16340874 915..19 4485 100 Minus
Blast to na_te.dros performed on 2015-02-12 04:32:49 has no hits.

BO08535.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:49:46 Download gff for BO08535.3prime
Subject Subject Range Query Range Percent Splice Strand
Hmgs-PA 499..1398 15..915 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:45:31 Download gff for BO08535.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4311-PE 499..1398 15..915 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:47:47 Download gff for BO08535.3prime
Subject Subject Range Query Range Percent Splice Strand
Hmgs-RD 615..1514 15..915 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:58:15 Download gff for BO08535.3prime
Subject Subject Range Query Range Percent Splice Strand
Hmgs-RD 615..1514 15..915 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:58:15 Download gff for BO08535.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 16339978..16340877 15..915 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:47:47 Download gff for BO08535.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12227483..12228382 15..915 99   Minus

BO08535.complete Sequence

1429 bp (1429 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ631228

> BO08535.complete
GAAGTTATCAGTCGACATGGCATCCCACTGGCCCGAGAACGTTGGCATAC
GCGCCATCGAGATTCTCTTCCCCTCCCAGTACGTGGACCAAACGGAGCTG
GAGACCTTCGATGGTGCCTCCGCGGGCAAGTACACAATTGGCCTGGGCCA
GGCCAAGATGGGCTTCTGCTCGGACCGCGAGGATGTCAACTCTCTCTGCC
TGACGGTTGTGAGCCGCCTGCTGGAGCGGCAACATGTGAAGCACTCGGAG
ATCGGACGACTGGAGGTGGGCACCGAGACCATTGTGGACAAGTCGAAGTC
GGTGAAGTCCGTGCTGATGCAGCTGTTCGCCGAGAGCGGGAACACGGACA
TCGAGGGCATCGACACCACGAACGCCTGTTACGGCGGCACGGCGGCGCTC
TTCAATGCCGTCAATTGGGTGGAATCTTCTAGCTGGGACGGCCGCCTGGC
TTTGGCCGTTTGTGCTGATATCGCCGTGTACGCCAAGGGTGCAGCGCGCC
CAACTGGTGGTGCGGGTGCTGTGGCTATGCTGGTGGGTCCAAATGCGCCG
CTTATCCTCGATCGTGGACTACGCGCAACGCACATGGAGCACGCCTACGA
CTTTTACAAGCCGGACCTCAGCTCCGAATACCCAACGGTAGATGGAAAGC
TCTCTATTCAGTGCTACCTTTCTGCTCTGGACACCTGCTACAGGCTGTAT
CGCAAGAAGTTCGACCAGCAGCAGAAGGATACTTCCAAGCAGCCGGCCAG
CCTGAGCACCTTCGATGCTATCCTATTCCACACACCGTTCTGCAAGTTGG
TGCAAAAATCTGTGGGTCGCCTGAGCTTCAACGATTTCCTGCTGAGCAGT
GAGGAGGAGCGAACGAAGCAGTTTCCCGACCTGGAACGTTTTAATACCGC
TACCCTGGAGAGCACCTACTTTGATCGCGATGTGGAGAAGGCCTTCATGA
CGCAGTCCGCCAACATCTTTGCCAGCAAGACCAAGAAATCGCTGCTGCTG
GCCAACCAAGTGGGCAATATGTACACACCCTCGGTGTACTCCGGTTTGGT
GTCTCTGTTGATTAGCGGACCAGCCCAGGAGCTGGTGGGAAAGCGCATTG
GTTTGTTCTCCTACGGATCCGGACTGGCTGCTTCCATGTACTCGATCAGC
GTGACCCAGGATGCAGCTGCTTTCGAAAAGTTCGTCTCGCAGCTGGACTA
CGTGCAGCCGTTGCTGAATTCACGGGAGAAGGTTGCGCCCGAGCAGTTCT
CCGCGCTGATGGAGGTGCGGGAGAAGAACAACCATGCGGCGCCCTACACG
CCAACGGGCAGCATCTCCGCACTGTTTCCCGGCACCTACTACCTGAAGGA
CGTGGATGCGCTGCATAGACGCACCTACGAGCGCACACCGACCATCAGCA
ATGGGGTGCACGCAAGCTTTCTAGACCAT

BO08535.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:51:22
Subject Length Description Subject Range Query Range Score Percent Strand
Hmgs-RF 1398 CG4311-PF 1..1395 17..1411 6975 100 Plus
Hmgs-RE 1398 CG4311-PE 1..1395 17..1411 6975 100 Plus
Hmgs-RD 1398 CG4311-PD 1..1395 17..1411 6975 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:51:23
Subject Length Description Subject Range Query Range Score Percent Strand
Hmgs-RF 1900 CG4311-RF 137..1532 16..1411 6980 100 Plus
Hmgs-RE 1803 CG4311-RE 40..1435 16..1411 6980 100 Plus
Hmgs-RD 1879 CG4311-RD 116..1511 16..1411 6980 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:51:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16339479..16340874 16..1411 6980 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:51:21 has no hits.

BO08535.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:11:47 Download gff for BO08535.complete
Subject Subject Range Query Range Percent Splice Strand
Hmgs-RB 1..1398 17..1415 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:32:38 Download gff for BO08535.complete
Subject Subject Range Query Range Percent Splice Strand
Hmgs-RB 147..1549 9..1415 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:21 Download gff for BO08535.complete
Subject Subject Range Query Range Percent Splice Strand
Hmgs-RD 117..1511 17..1413 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:11:47 Download gff for BO08535.complete
Subject Subject Range Query Range Percent Splice Strand
Hmgs-RB 147..1549 9..1415 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:28:39 Download gff for BO08535.complete
Subject Subject Range Query Range Percent Splice Strand
Hmgs-RD 117..1511 17..1413 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:28:39 Download gff for BO08535.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16339480..16340874 17..1413 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:21 Download gff for BO08535.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12226985..12228379 17..1413 99   Plus

BO08535.pep Sequence

Translation from 16 to 1429

> BO08535.pep
MASHWPENVGIRAIEILFPSQYVDQTELETFDGASAGKYTIGLGQAKMGF
CSDREDVNSLCLTVVSRLLERQHVKHSEIGRLEVGTETIVDKSKSVKSVL
MQLFAESGNTDIEGIDTTNACYGGTAALFNAVNWVESSSWDGRLALAVCA
DIAVYAKGAARPTGGAGAVAMLVGPNAPLILDRGLRATHMEHAYDFYKPD
LSSEYPTVDGKLSIQCYLSALDTCYRLYRKKFDQQQKDTSKQPASLSTFD
AILFHTPFCKLVQKSVGRLSFNDFLLSSEEERTKQFPDLERFNTATLEST
YFDRDVEKAFMTQSANIFASKTKKSLLLANQVGNMYTPSVYSGLVSLLIS
GPAQELVGKRIGLFSYGSGLAASMYSISVTQDAAAFEKFVSQLDYVQPLL
NSREKVAPEQFSALMEVREKNNHAAPYTPTGSISALFPGTYYLKDVDALH
RRTYERTPTISNGVHASFLDH

BO08535.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:13:44
Subject Length Description Subject Range Query Range Score Percent Strand
Hmgs-PF 465 CG4311-PF 1..465 1..465 2386 100 Plus
Hmgs-PE 465 CG4311-PE 1..465 1..465 2386 100 Plus
Hmgs-PD 465 CG4311-PD 1..465 1..465 2386 100 Plus
Hmgs-PB 465 CG4311-PB 1..465 1..465 2386 100 Plus
Hmgs-PC 465 CG4311-PC 1..465 1..465 2386 100 Plus