Clone Sequence Records
BO08537.3prime Sequence
836 bp (774 high quality bases) assembled on 2006-01-06
> BO08537.3prime
ATGGTCTAGAAAGCTTGCGTAGAAGGACTCCTCGCTCCAGGCGCTTATCA
ACCTGACTCTCACCTCGCGTTCATCGGCGTGCGTTCGGTACTTCTCGGAT
GCCTCGTTAACCTTTGGCACGGGCTTCGCCTCCAGGACCTGGGTGTAGAG
CAGGGCGGCAGCCACGCCCCCCAGCACAGGTCCCACCCAGTATACCCAAT
GCGACGCCCAGATGTCGGTGGCAAAGGCGGTGCCCACGGTGCGAGCGGGA
TTCATGCTGGCCCCGGTGTAGCGGATGGTGCCCAAGTGACCCAGGGTCAC
CGCCATTCCGATGGCCAAGGGCGCCGTGTAGCGGGAATCGGGCTTGTGGG
GATCACAGGCCCCAAAGACGACGAGCACCAGCAGGAGTCCCAGGAAGAAC
TCGATTCCCAGGCCCTGCAGCTCGGTGATATTGGGCGCCAGAGAGGTGTG
ACCCAGGCCATTGTAATAGTCCTGATCGATGAGAATCTTAACCGCTGCAG
TTCCGGCAATTGCACCCAAGCACTGGAAAACCACATAGAAAAAGGCTCTG
ATCAAGCTAATTCGTCCTGCGACCAACATTCCAGCGGTAACGGCAGGATT
CACATGACCACCACTCAAGTGGCCCACAATCGTGATGGCCATGAAGATAG
CCAGGCCAAAAGCCAAGGCCTTGAAGGTGCCATCCTCAATTTGGGTGCAT
GCGCCGCAGGCAAAGAAATTGAGGATCAAATTGCCAAGGAATTCTCCAAT
CAAGGCCTGCCACAATCGCAGCTCCTTGGATTTGAGCTCATTGAGACCCA
GTGAGTATTCGAATTTTCCCATGTCGACTGATAACT
BO08537.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:26:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7777-PB | 807 | CG7777-RB | 1..804 | 822..19 | 4020 | 100 | Minus |
CG7777-PA | 795 | CG7777-RA | 1..759 | 822..64 | 3795 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:44:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7777-RB | 1386 | CG7777-RB | 216..1019 | 822..19 | 4020 | 100 | Minus |
CG7777-RC | 1479 | CG7777-RC | 216..975 | 822..63 | 3800 | 100 | Minus |
CG7777-RD | 1388 | CG7777-RD | 216..974 | 822..64 | 3795 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:44:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11441066..11441535 | 488..19 | 2350 | 100 | Minus |
2R | 25286936 | 2R | 11439968..11440125 | 788..631 | 790 | 100 | Minus |
2R | 25286936 | 2R | 11440186..11440330 | 631..487 | 725 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:44:39 has no hits.
BO08537.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:49:50 Download gff for
BO08537.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7777-PB | 1..807 | 16..822 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:45:37 Download gff for
BO08537.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7777-PB | 1..807 | 16..822 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:14:27 Download gff for
BO08537.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7777-RB | 211..1019 | 19..829 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:18:27 Download gff for
BO08537.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7777-RB | 211..1019 | 19..829 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:18:27 Download gff for
BO08537.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11439970..11440125 | 631..786 | 100 | -> | Minus |
2R | 11440187..11440330 | 487..630 | 100 | -> | Minus |
2R | 11441068..11441535 | 19..486 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:14:27 Download gff for
BO08537.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7327475..7327630 | 631..786 | 100 | -> | Minus |
arm_2R | 7327692..7327835 | 487..630 | 100 | -> | Minus |
arm_2R | 7328573..7329040 | 19..486 | 100 | | Minus |
BO08537.5prime Sequence
836 bp (818 high quality bases) assembled on 2006-01-06
> BO08537.5prime
GAAGTTATCAGTCGACATGGGAAAATTCGAATACTCACTGGGTCTCAATG
AGCTCAAATCCAAGGAGCTGCGATTGTGGCAGGCCTTGATTGGAGAATTC
CTTGGCAATTTGATCCTCAATTTCTTTGCCTGCGGCGCATGCACCCAAAT
TGAGGATGGCACCTTCAAGGCCTTGGCTTTTGGCCTGGCTATCTTCATGG
CCATCACGATTGTGGGCCACTTGAGTGGTGGTCATGTGAATCCTGCCGTT
ACCGCTGGAATGTTGGTCGCAGGACGAATTAGCTTGATCAGAGCCTTTTT
CTATGTGGTTTTCCAGTGCTTGGGTGCAATTGCCGGAACTGCAGCGGTTA
AGATTCTCATCGATCAGGACTATTACAATGGCCTGGGTCACACCTCTCTG
GCGCCCAATATCACCGAGCTGCAGGGCCTGGGAATCGAGTTCTTCCTGGG
ACTCCTGCTGGTGCTCGTCGTCTTTGGGGCCTGTGATCCCCACAAGCCCG
ATTCCCGCTACACGGCGCCCTTGGCCATCGGAATGGCGGTGACCCTGGGT
CACTTGGGCACCATCCGCTACACCGGGGCCAGCATGAATCCCGCTCGCAC
CGTGGGCACCGCCTTTGCCACCGACATCTGGGCGTCGCATTGGGTATACT
GGGTGGGACCTGTGCTGGGGGGCGTGGCTGCCGCCCTGCTCTACACCCAG
GTCCTGGAGGCGAAGCCCGTGCCAAAGGTTAACGAGGCATCCGAGAAGTA
CCGAACGCACGCCGATGAACGCGAGGTGAGAGTCAGGTTGATAAGCGCCT
GGAGCGAGGAGTCCTTCTACGCAAGCTTTCTAGACC
BO08537.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:26:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7777-PB | 807 | CG7777-RB | 1..804 | 17..820 | 4020 | 100 | Plus |
CG7777-PA | 795 | CG7777-RA | 1..759 | 17..775 | 3795 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:14:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7777-RB | 1386 | CG7777-RB | 216..1019 | 17..820 | 4020 | 100 | Plus |
CG7777-RC | 1479 | CG7777-RC | 216..975 | 17..776 | 3800 | 100 | Plus |
CG7777-RD | 1388 | CG7777-RD | 216..974 | 17..775 | 3795 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:14:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11441066..11441535 | 351..820 | 2350 | 100 | Plus |
2R | 25286936 | 2R | 11439968..11440125 | 51..208 | 790 | 100 | Plus |
2R | 25286936 | 2R | 11440186..11440330 | 208..352 | 725 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:14:03 has no hits.
BO08537.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:49:51 Download gff for
BO08537.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7777-PB | 1..807 | 17..823 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:45:39 Download gff for
BO08537.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7777-PB | 1..807 | 17..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:14:36 Download gff for
BO08537.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7777-RB | 211..1019 | 10..820 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:43:59 Download gff for
BO08537.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7777-RB | 211..1019 | 10..820 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:43:59 Download gff for
BO08537.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11439970..11440125 | 53..208 | 100 | -> | Plus |
2R | 11440187..11440330 | 209..352 | 100 | -> | Plus |
2R | 11441068..11441535 | 353..820 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:14:36 Download gff for
BO08537.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7327475..7327630 | 53..208 | 100 | -> | Plus |
arm_2R | 7327692..7327835 | 209..352 | 100 | -> | Plus |
arm_2R | 7328573..7329040 | 353..820 | 100 | | Plus |
BO08537.complete Sequence
838 bp (838 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631229
> BO08537.complete
GAAGTTATCAGTCGACATGGGAAAATTCGAATACTCACTGGGTCTCAATG
AGCTCAAATCCAAGGAGCTGCGATTGTGGCAGGCCTTGATTGGAGAATTC
CTTGGCAATTTGATCCTCAATTTCTTTGCCTGCGGCGCATGCACCCAAAT
TGAGGATGGCACCTTCAAGGCCTTGGCTTTTGGCCTGGCTATCTTCATGG
CCATCACGATTGTGGGCCACTTGAGTGGTGGTCATGTGAATCCTGCCGTT
ACCGCTGGAATGTTGGTCGCAGGACGAATTAGCTTGATCAGAGCCTTTTT
CTATGTGGTTTTCCAGTGCTTGGGTGCAATTGCCGGAACTGCAGCGGTTA
AGATTCTCATCGATCAGGACTATTACAATGGCCTGGGTCACACCTCTCTG
GCGCCCAATATCACCGAGCTGCAGGGCCTGGGAATCGAGTTCTTCCTGGG
ACTCCTGCTGGTGCTCGTCGTCTTTGGGGCCTGTGATCCCCACAAGCCCG
ATTCCCGCTACACGGCGCCCTTGGCCATCGGAATGGCGGTGACCCTGGGT
CACTTGGGCACCATCCGCTACACCGGGGCCAGCATGAATCCCGCTCGCAC
CGTGGGCACCGCCTTTGCCACCGACATCTGGGCGTCGCATTGGGTATACT
GGGTGGGACCTGTGCTGGGGGGCGTGGCTGCCGCCCTGCTCTACACCCAG
GTCCTGGAGGCGAAGCCCGTGCCAAAGGTTAACGAGGCATCCGAGAAGTA
CCGAACGCACGCCGATGAACGCGAGGTGAGAGTCAGGTTGATAAGCGCCT
GGAGCGAGGAGTCCTTCTACGCAAGCTTTCTAGACCAT
BO08537.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:43:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7777-RB | 807 | CG7777-PB | 1..804 | 17..820 | 4020 | 100 | Plus |
CG7777-RC | 813 | CG7777-PC | 1..760 | 17..776 | 3800 | 100 | Plus |
CG7777-RD | 780 | CG7777-PD | 1..759 | 17..775 | 3795 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:43:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7777-RB | 1386 | CG7777-RB | 216..1019 | 17..820 | 4020 | 100 | Plus |
CG7777-RC | 1479 | CG7777-RC | 216..975 | 17..776 | 3800 | 100 | Plus |
CG7777-RD | 1388 | CG7777-RD | 216..974 | 17..775 | 3795 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:43:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11441066..11441535 | 351..820 | 2350 | 100 | Plus |
2R | 25286936 | 2R | 11439968..11440125 | 51..208 | 790 | 100 | Plus |
2R | 25286936 | 2R | 11440186..11440330 | 208..352 | 725 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:43:02 has no hits.
BO08537.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:11:48 Download gff for
BO08537.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7777-RB | 1..807 | 17..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:04:32 Download gff for
BO08537.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7777-RB | 208..1016 | 10..820 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:28 Download gff for
BO08537.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7777-RB | 216..1019 | 17..822 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:11:49 Download gff for
BO08537.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7777-RB | 208..1016 | 10..820 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:25:10 Download gff for
BO08537.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7777-RB | 216..1019 | 17..822 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:25:10 Download gff for
BO08537.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11439833..11439868 | 17..52 | 100 | -> | Plus |
2R | 11439970..11440125 | 53..208 | 100 | -> | Plus |
2R | 11440187..11440330 | 209..352 | 100 | -> | Plus |
2R | 11441068..11441535 | 353..822 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:28 Download gff for
BO08537.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7327338..7327373 | 17..52 | 100 | -> | Plus |
arm_2R | 7327475..7327630 | 53..208 | 100 | -> | Plus |
arm_2R | 7327692..7327835 | 209..352 | 100 | -> | Plus |
arm_2R | 7328573..7329040 | 353..822 | 99 | | Plus |
BO08537.pep Sequence
Translation from 16 to 838
> BO08537.pep
MGKFEYSLGLNELKSKELRLWQALIGEFLGNLILNFFACGACTQIEDGTF
KALAFGLAIFMAITIVGHLSGGHVNPAVTAGMLVAGRISLIRAFFYVVFQ
CLGAIAGTAAVKILIDQDYYNGLGHTSLAPNITELQGLGIEFFLGLLLVL
VVFGACDPHKPDSRYTAPLAIGMAVTLGHLGTIRYTGASMNPARTVGTAF
ATDIWASHWVYWVGPVLGGVAAALLYTQVLEAKPVPKVNEASEKYRTHAD
EREVRVRLISAWSEESFYASFLDH
BO08537.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:13:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7777-PB | 268 | CG7777-PB | 1..268 | 1..268 | 1388 | 100 | Plus |
CG7777-PA | 264 | CG7777-PA | 1..255 | 1..255 | 1318 | 99.6 | Plus |
CG7777-PD | 259 | CG7777-PD | 1..256 | 1..256 | 1314 | 98.8 | Plus |
CG7777-PC | 270 | CG7777-PC | 1..253 | 1..253 | 1312 | 100 | Plus |
Drip-PE | 239 | CG9023-PE | 1..228 | 1..233 | 473 | 40.4 | Plus |