Clone Sequence Records
BO08539.3prime Sequence
629 bp (628 high quality bases) assembled on 2006-01-06
> BO08539.3prime
ATGGTCTAGAAAGCTTGCACTGAACAGGCCCTCGGTGGCCTTCTCCAAAT
TCCAATTCTCCTTGGAGAGCACGGCGCGCGCCTCATGCTCGTCGATGCCC
ATGTCCCTGAGACGTTGGATCTTTGAATCACAATCGGGAAAGGTGTGCGG
TCCGCCCGCATACGCGTTGGTCCAGTGCTTGGCCGTAAGCAGGAACAGAT
CGTACTTGTCCTTAAACTGATAGGCCACCACTGCGTCCTGTGGATCGTCC
GGCTCTGCGGCGGCCAGGAGCGCCTGCAGCGACAGCAGTACGGTGCGCAG
TGTCATCGCTGCAGCCCAGTTGTCCTTTAAGATGTCCAAGCAAATCGCAC
CCGTAACCGACGATATATTCGGATGCCAGATGCGCGTTATGAAGCGTACC
TTTGGTGGATTGAAGGGATATGTCTCGGGCACCTTGATCTCCAGGACGAA
CTTGCCGCCCTCGTAGGGCGTGTCAGGCGGACCGGCGATCTCGCCGCGCA
GCTCCGTCCAACTGTCATTGACCAGTTCGATTTTGATGGAACACTGGACG
ATCTCCTCGCTGCGCATCACCTCCTTGAACTCCCGCTTGATCCGCGACAC
TGCCATGTTCGCCATGTCGACTGATAACT
BO08539.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:26:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8284-PA | 600 | UbcD4-RA | 1..597 | 615..19 | 2985 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:10:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ubc4-RC | 1709 | CG8284-RC | 357..954 | 616..19 | 2990 | 100 | Minus |
Ubc4-RB | 1473 | CG8284-RB | 357..954 | 616..19 | 2990 | 100 | Minus |
Ubc4-RA | 1107 | CG8284-RA | 357..954 | 616..19 | 2990 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:10:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9699344..9699726 | 401..19 | 1915 | 100 | Minus |
3L | 28110227 | 3L | 9698964..9699123 | 554..395 | 800 | 100 | Minus |
3L | 28110227 | 3L | 9698692..9698755 | 616..553 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:10:34 has no hits.
BO08539.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:49:54 Download gff for
BO08539.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UbcD4-PA | 1..600 | 18..615 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:45:43 Download gff for
BO08539.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8284-PA | 1..600 | 18..615 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:34:23 Download gff for
BO08539.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UbcD4-RA | 354..960 | 11..623 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:36:18 Download gff for
BO08539.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ubc4-RA | 354..960 | 11..623 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:36:18 Download gff for
BO08539.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9698689..9698755 | 553..623 | 94 | -> | Minus |
3L | 9698966..9699118 | 400..552 | 100 | -> | Minus |
3L | 9699346..9699732 | 11..399 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:34:23 Download gff for
BO08539.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9691789..9691855 | 553..623 | 94 | -> | Minus |
arm_3L | 9692066..9692218 | 400..552 | 100 | -> | Minus |
arm_3L | 9692446..9692832 | 11..399 | 99 | | Minus |
BO08539.5prime Sequence
629 bp (628 high quality bases) assembled on 2006-01-06
> BO08539.5prime
GAAGTTATCAGTCGACATGGCGAACATGGCAGTGTCGCGGATCAAGCGGG
AGTTCAAGGAGGTGATGCGCAGCGAGGAGATCGTCCAGTGTTCCATCAAA
ATCGAACTGGTCAATGACAGTTGGACGGAGCTGCGCGGCGAGATCGCCGG
TCCGCCTGACACGCCCTACGAGGGCGGCAAGTTCGTCCTGGAGATCAAGG
TGCCCGAGACATATCCCTTCAATCCACCAAAGGTACGCTTCATAACGCGC
ATCTGGCATCCGAATATATCGTCGGTTACGGGTGCGATTTGCTTGGACAT
CTTAAAGGACAACTGGGCTGCAGCGATGACACTGCGCACCGTACTGCTGT
CGCTGCAGGCGCTCCTGGCCGCCGCAGAGCCGGACGATCCACAGGACGCA
GTGGTGGCCTATCAGTTTAAGGACAAGTACGATCTGTTCCTGCTTACGGC
CAAGCACTGGACCAACGCGTATGCGGGCGGACCGCACACCTTTCCCGATT
GTGATTCAAAGATCCAACGTCTCAGGGACATGGGCATCGACGAGCATGAG
GCGCGCGCCGTGCTCTCCAAGGAGAATTGGAATTTGGAGAAGGCCACCGA
GGGCCTGTTCAGTGCAAGCTTTCTAGACC
BO08539.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:26:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8284-PA | 600 | UbcD4-RA | 1..597 | 17..613 | 2985 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:37:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ubc4-RC | 1709 | CG8284-RC | 357..954 | 16..613 | 2990 | 100 | Plus |
Ubc4-RB | 1473 | CG8284-RB | 357..954 | 16..613 | 2990 | 100 | Plus |
Ubc4-RA | 1107 | CG8284-RA | 357..954 | 16..613 | 2990 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:37:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9699344..9699726 | 231..613 | 1915 | 100 | Plus |
3L | 28110227 | 3L | 9698964..9699123 | 78..237 | 800 | 100 | Plus |
3L | 28110227 | 3L | 9698692..9698755 | 16..79 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:37:47 has no hits.
BO08539.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:49:55 Download gff for
BO08539.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UbcD4-PA | 1..600 | 17..614 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:45:45 Download gff for
BO08539.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8284-PA | 1..600 | 17..614 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:54:58 Download gff for
BO08539.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UbcD4-RA | 354..960 | 9..621 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:52:28 Download gff for
BO08539.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ubc4-RA | 354..960 | 9..621 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:52:28 Download gff for
BO08539.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9698689..9698755 | 9..79 | 94 | -> | Plus |
3L | 9698966..9699118 | 80..232 | 100 | -> | Plus |
3L | 9699346..9699732 | 233..621 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:54:58 Download gff for
BO08539.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9691789..9691855 | 9..79 | 94 | -> | Plus |
arm_3L | 9692066..9692218 | 80..232 | 100 | -> | Plus |
arm_3L | 9692446..9692832 | 233..621 | 99 | | Plus |
BO08539.complete Sequence
631 bp (631 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631230
> BO08539.complete
GAAGTTATCAGTCGACATGGCGAACATGGCAGTGTCGCGGATCAAGCGGG
AGTTCAAGGAGGTGATGCGCAGCGAGGAGATCGTCCAGTGTTCCATCAAA
ATCGAACTGGTCAATGACAGTTGGACGGAGCTGCGCGGCGAGATCGCCGG
TCCGCCTGACACGCCCTACGAGGGCGGCAAGTTCGTCCTGGAGATCAAGG
TGCCCGAGACATATCCCTTCAATCCACCAAAGGTACGCTTCATAACGCGC
ATCTGGCATCCGAATATATCGTCGGTTACGGGTGCGATTTGCTTGGACAT
CTTAAAGGACAACTGGGCTGCAGCGATGACACTGCGCACCGTACTGCTGT
CGCTGCAGGCGCTCCTGGCCGCCGCAGAGCCGGACGATCCACAGGACGCA
GTGGTGGCCTATCAGTTTAAGGACAAGTACGATCTGTTCCTGCTTACGGC
CAAGCACTGGACCAACGCGTATGCGGGCGGACCGCACACCTTTCCCGATT
GTGATTCAAAGATCCAACGTCTCAGGGACATGGGCATCGACGAGCATGAG
GCGCGCGCCGTGCTCTCCAAGGAGAATTGGAATTTGGAGAAGGCCACCGA
GGGCCTGTTCAGTGCAAGCTTTCTAGACCAT
BO08539.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:39:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ubc4-RC | 600 | CG8284-PC | 1..597 | 17..613 | 2985 | 100 | Plus |
Ubc4-RB | 600 | CG8284-PB | 1..597 | 17..613 | 2985 | 100 | Plus |
Ubc4-RA | 600 | CG8284-PA | 1..597 | 17..613 | 2985 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:39:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ubc4-RC | 1709 | CG8284-RC | 357..954 | 16..613 | 2990 | 100 | Plus |
Ubc4-RB | 1473 | CG8284-RB | 357..954 | 16..613 | 2990 | 100 | Plus |
Ubc4-RA | 1107 | CG8284-RA | 357..954 | 16..613 | 2990 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:39:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9699344..9699726 | 231..613 | 1915 | 100 | Plus |
3L | 28110227 | 3L | 9698964..9699123 | 78..237 | 800 | 100 | Plus |
3L | 28110227 | 3L | 9698692..9698755 | 16..79 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:39:31 has no hits.
BO08539.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:55:23 Download gff for
BO08539.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UbcD4-RA | 1..600 | 17..614 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:27:46 Download gff for
BO08539.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UbcD4-RA | 348..954 | 9..621 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:28:58 Download gff for
BO08539.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UbcD4-RA | 358..954 | 17..615 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:55:23 Download gff for
BO08539.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UbcD4-RA | 348..954 | 9..621 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:35:47 Download gff for
BO08539.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ubc4-RA | 358..954 | 17..615 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:35:47 Download gff for
BO08539.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9698693..9698755 | 17..79 | 100 | -> | Plus |
3L | 9698966..9699118 | 80..232 | 100 | -> | Plus |
3L | 9699346..9699726 | 233..615 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:28:58 Download gff for
BO08539.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9691793..9691855 | 17..79 | 100 | -> | Plus |
arm_3L | 9692066..9692218 | 80..232 | 100 | -> | Plus |
arm_3L | 9692446..9692826 | 233..615 | 99 | | Plus |
BO08539.pep Sequence
Translation from 16 to 631
> BO08539.pep
MANMAVSRIKREFKEVMRSEEIVQCSIKIELVNDSWTELRGEIAGPPDTP
YEGGKFVLEIKVPETYPFNPPKVRFITRIWHPNISSVTGAICLDILKDNW
AAAMTLRTVLLSLQALLAAAEPDDPQDAVVAYQFKDKYDLFLLTAKHWTN
AYAGGPHTFPDCDSKIQRLRDMGIDEHEARAVLSKENWNLEKATEGLFSA
SFLDH
BO08539.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:18:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ubc4-PC | 199 | CG8284-PC | 1..199 | 1..199 | 1049 | 100 | Plus |
Ubc4-PB | 199 | CG8284-PB | 1..199 | 1..199 | 1049 | 100 | Plus |
Ubc4-PA | 199 | CG8284-PA | 1..199 | 1..199 | 1049 | 100 | Plus |
eff-PC | 147 | CG7425-PC | 1..146 | 4..153 | 308 | 44.7 | Plus |
eff-PB | 147 | CG7425-PB | 1..146 | 4..153 | 308 | 44.7 | Plus |