Clone BO08542 Report

Search the DGRC for BO08542

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:85
Well:42
Vector:pDNR-Dual
Associated Gene/TranscriptCG12030-RA
Protein status:BO08542.pep: validated full length
Sequenced Size:1084

Clone Sequence Records

BO08542.3prime Sequence

893 bp (792 high quality bases) assembled on 2006-01-06

> BO08542.3prime
ATGGTCTAGAAAGCTTGCCTTGTTGGCATACCCGTTTGGGTTCTGGCTCT
GCCAGCGCCACGTGTCCTCGCACATCTTGTCGATGCCACGCTCGGCCTTC
CAGCCCAGCTTCTTATCCGCCAACGTGGCGTCCGCATAGCAAGTGGCCAC
ATCTCCGGACCGTCGGTCCACCAGAGTGTAGTTGACCTTCTTGCCGGAGG
CCTTCTCAAACGCCTTCACCATGTCCAGCACCGAGTAGCCCACGCCGGTG
CCCAAATTGTAGGCGAAAAAGCCCGTCTCCGCGATGTTGCGCAGCTTGTC
CAACGCCTTTACGTGTCCCTCGGCCAGGTCCACGATGTGGATGTAATCGC
GCACGCCGGTGCCGTCGTGCGTGGGAAAGTCGCTGCCGTAGACACTCAGG
CTGGGACGTCGACCCACGGCCACCTGTGCGATGTAGGGCATCAGGTTGTT
GGGCTCGCCGTTCGGATCCTCGCCAATCCGACCACTGATGTGGGCACCCA
CCGGGTTGAAGTACCGCAGCGAAACCACTGCCCAACGCTTGTCAGACTTG
CACAGATCCTTGAGAATCTCCTCGGTGAAATATTTAGTCTTGCCGTAGGG
CGATGTACAGTTGCCCGTGGGATGCTCCTCGGTCACGGGCAGGAACTTTG
GCTCACCGTATACGGTGGCGCTGGAGCTGTACACGAACTTGAAGACATTG
TTGTCGGCCATCGCCTCCAGCAGGACATTGGTGCCGGTCATGTTGTTGTG
GTAGTACTGCAAAGGTATGCGGCAGGACTCACCCACGGCCTTCAGGGCGG
CAAAGTGGGCCACCATGTCGATTTTGTGCTCCTGGAAGACGGAGCGCACC
TGCTCCCCTGTCGTGATGTCCACTCTATAGAAGTTGAACTTCT

BO08542.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:26:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG12030-PA 1053 CG12030-RA 212..1050 857..19 4195 100 Minus
CG12030-PA 1053 CG12030-RA 176..207 893..862 135 96.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:59:00
Subject Length Description Subject Range Query Range Score Percent Strand
Gale-RB 1538 CG12030-RB 455..1329 893..19 4315 99.7 Minus
Gale-RA 1757 CG12030-RA 674..1548 893..19 4315 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:58:50
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 650582..651102 539..19 2605 100 Minus
3L 28110227 3L 650231..650523 830..538 1465 100 Minus
3L 28110227 3L 649355..649419 893..829 250 92.3 Minus
Blast to na_te.dros performed 2015-02-10 16:58:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\HeT-A 5691 Dyak\HeT-A YAKHETA 5691bp 5077..5115 662..700 123 79.5 Plus

BO08542.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:50:00 Download gff for BO08542.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12030-PA 176..1053 18..893 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:45:51 Download gff for BO08542.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12030-PA 176..1053 18..893 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:26:18 Download gff for BO08542.3prime
Subject Subject Range Query Range Percent Splice Strand
Gale-RA 674..1560 7..893 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:02:28 Download gff for BO08542.3prime
Subject Subject Range Query Range Percent Splice Strand
Gale-RA 674..1560 7..893 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:02:28 Download gff for BO08542.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 649355..649419 829..893 95 -> Minus
3L 650233..650523 538..828 100 -> Minus
3L 650584..651114 7..537 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:26:18 Download gff for BO08542.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 649355..649419 829..893 95 -> Minus
arm_3L 650233..650523 538..828 100 -> Minus
arm_3L 650584..651114 7..537 99   Minus

BO08542.5prime Sequence

865 bp (803 high quality bases) assembled on 2006-01-06

> BO08542.5prime
GAAGTTATCAGTCGACATGGCCCCACCCACGGTCCTGGTCACCGGAGGAG
CCGGCTACATTGGCTCCCACACGGTTCTGGAGATGCTCAATGCGGGCTAC
AACGTCATCTGCGTGGACAACCTGTGCAACGCCTACAGCAGCGGGGCCAA
ACTGCCGGAGGCCCTCAGCCGGGTGCAGGAAATCACCGGCAAGAAGGTCA
ACTTCTATAGAGTGGACATCACGGACAGGGAGCAGGTGCGCTCCGTCTTC
CAGGAGCACAAAATCGACATGGTGGCCCACTTTGCCGCCCTGAAGGCCGT
GGGTGAGTCCTGCCGCATACCTTTGCAGTACTACCACAACAACATGACCG
GCACCAATGTCCTGCTGGAGGCGATGGCCGACAACAATGTCTTCAAGTTC
GTGTACAGCTCCAGCGCCACCGTATACGGTGAGCCAAAGTTCCTGCCCGT
GACCGAGGAGCATCCCACGGGCAACTGTACATCGCCCTACGGCAAGACTA
AATATTTCACCGAGGAGATTCTCAAGGATCTGTGCAAGTCTGACAAGCGT
TGGGCAGTGGTTTCGCTGCGGTACTTCAACCCGGTGGGTGCCCACATCAG
TGGTCGGATTGGCGAGGATCCGAACGGCGAGCCCAACAACCTGATGCCCT
ACATCGCACAGGTGGCCGTGGGTCGACGTCCCAGCCTGAGTGTCTACGGC
AGCGACTTTCCCACGCACGACGGCACCGGCGTGCGCGATTACATCCACAT
CGTGGACCTGGCCGAGGGACACGTAAAGGCGTTGGACAAGCTGCGCAACA
TCGCGGAGACGGGCTTTTTCGCCTACAATTTGGGCACCGGCGTGGGCTAC
TCGGTGCTGGACATG

BO08542.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:26:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG12030-PA 1053 CG12030-RA 1..849 17..865 4245 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:46:19
Subject Length Description Subject Range Query Range Score Percent Strand
Gale-RB 1538 CG12030-RB 280..1128 17..865 4245 100 Plus
Gale-RA 1757 CG12030-RA 499..1347 17..865 4245 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:46:10
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 650582..650901 546..865 1600 100 Plus
3L 28110227 3L 650231..650523 255..547 1465 100 Plus
3L 28110227 3L 649180..649419 17..256 1200 100 Plus
Blast to na_te.dros performed 2015-02-12 05:46:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\HeT-A 5691 Dyak\HeT-A YAKHETA 5691bp 5077..5115 423..385 123 79.5 Minus

BO08542.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:50:01 Download gff for BO08542.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12030-PA 1..849 17..865 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:45:52 Download gff for BO08542.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12030-PA 1..849 17..865 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:16:16 Download gff for BO08542.5prime
Subject Subject Range Query Range Percent Splice Strand
Gale-RA 495..1347 9..865 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:45:41 Download gff for BO08542.5prime
Subject Subject Range Query Range Percent Splice Strand
Gale-RA 495..1347 9..865 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:45:41 Download gff for BO08542.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 649180..649419 17..256 100 -> Plus
3L 650233..650523 257..547 100 -> Plus
3L 650584..650901 548..865 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:16:16 Download gff for BO08542.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 649180..649419 17..256 100 -> Plus
arm_3L 650233..650523 257..547 100 -> Plus
arm_3L 650584..650901 548..865 100   Plus

BO08542.complete Sequence

1084 bp assembled on 2007-10-17

GenBank Submission: FJ638659

> BO08542.complete
GAAGTTATCAGTCGACATGGCCCCACCCACGGTCCTGGTCACCGGAGGAG
CCGGCTACATTGGCTCCCACACGGTTCTGGAGATGCTCAATGCGGGCTAC
AACGTCATCTGCGTGGACAACCTGTGCAACGCCTACAGCAGCGGGGCCAA
ACTGCCGGAGGCCCTCAGCCGGGTGCAGGAAATCACCGGCAAGAAGGTCA
ACTTCTATAGAGTGGACATCACGGACAGGGAGCAGGTGCGCTCCGTCTTC
CAGGAGCACAAAATCGACATGGTGGCCCACTTTGCCGCCCTGAAGGCCGT
GGGTGAGTCCTGCCGCATACCTTTGCAGTACTACCACAACAACATGACCG
GCACCAATGTCCTGCTGGAGGCGATGGCCGACAACAATGTCTTCAAGTTC
GTGTACAGCTCCAGCGCCACCGTATACGGTGAGCCAAAGTTCCTGCCCGT
GACCGAGGAGCATCCCACGGGCAACTGTACATCGCCCTACGGCAAGACTA
AATATTTCACCGAGGAGATTCTCAAGGATCTGTGCAAGTCTGACAAGCGT
TGGGCAGTGGTTTCGCTGCGGTACTTCAACCCGGTGGGTGCCCACATCAG
TGGTCGGATTGGCGAGGATCCGAACGGCGAGCCCAACAACCTGATGCCCT
ACATCGCACAGGTGGCCGTGGGTCGACGTCCCAGCCTGAGTGTCTACGGC
AGCGACTTTCCCACGCACGACGGCACCGGCGTGCGCGATTACATCCACAT
CGTGGACCTGGCCGAGGGACACGTAAAGGCGTTGGACAAGCTGCGCAACA
TCGCGGAGACGGGCTTTTTCGCCTACAATTTGGGCACCGGCGTGGGCTAC
TCGGTGCTGGACATGGTGAAGGCGTTTGAGAAGGCCTCCGGCAAGAAGGT
CAACTACACTCTGGTGGACCGACGGTCCGGAGATGTGGCCACTTGCTATG
CGGACGCCACGTTGGCGGATAAGAAGCTGGGCTGGAAGGCCGAGCGTGGC
ATCGACAAGATGTGCGAGGACACGTGGCGCTGGCAGAGCCAGAACCCAAA
CGGGTATGCCAACAAGGCAAGCTTTCTAGACCAT

BO08542.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:03:53
Subject Length Description Subject Range Query Range Score Percent Strand
Gale-RB 1053 CG12030-PB 1..1050 17..1066 5250 100 Plus
Gale-RA 1053 CG12030-PA 1..1050 17..1066 5250 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:03:54
Subject Length Description Subject Range Query Range Score Percent Strand
Gale-RB 1538 CG12030-RB 280..1329 17..1066 5250 100 Plus
Gale-RA 1757 CG12030-RA 499..1548 17..1066 5250 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:03:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 650582..651102 546..1066 2605 100 Plus
3L 28110227 3L 650231..650523 255..547 1465 100 Plus
3L 28110227 3L 649180..649419 17..256 1200 100 Plus
Blast to na_te.dros performed 2014-11-27 07:03:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\HeT-A 5691 Dyak\HeT-A YAKHETA 5691bp 5077..5115 423..385 123 79.5 Minus

BO08542.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:55:30 Download gff for BO08542.complete
Subject Subject Range Query Range Percent Splice Strand
CG12030-RA 1..1053 17..1067 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:05:48 Download gff for BO08542.complete
Subject Subject Range Query Range Percent Splice Strand
CG12030-RA 533..1598 9..1078 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:03:56 Download gff for BO08542.complete
Subject Subject Range Query Range Percent Splice Strand
Gale-RA 499..1548 17..1068 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:32:07 Download gff for BO08542.complete
Subject Subject Range Query Range Percent Splice Strand
CG12030-RA 537..1586 17..1068 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:02:03 Download gff for BO08542.complete
Subject Subject Range Query Range Percent Splice Strand
Gale-RA 499..1548 17..1068 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:02:03 Download gff for BO08542.complete
Subject Subject Range Query Range Percent Splice Strand
3L 650233..650523 257..547 100 -> Plus
3L 649180..649419 17..256 100 -> Plus
3L 650584..651102 548..1068 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:03:56 Download gff for BO08542.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 649180..649419 17..256 100 -> Plus
arm_3L 650233..650523 257..547 100 -> Plus
arm_3L 650584..651102 548..1068 99   Plus

BO08542.pep Sequence

Translation from 16 to 1084

> BO08542.pep
MAPPTVLVTGGAGYIGSHTVLEMLNAGYNVICVDNLCNAYSSGAKLPEAL
SRVQEITGKKVNFYRVDITDREQVRSVFQEHKIDMVAHFAALKAVGESCR
IPLQYYHNNMTGTNVLLEAMADNNVFKFVYSSSATVYGEPKFLPVTEEHP
TGNCTSPYGKTKYFTEEILKDLCKSDKRWAVVSLRYFNPVGAHISGRIGE
DPNGEPNNLMPYIAQVAVGRRPSLSVYGSDFPTHDGTGVRDYIHIVDLAE
GHVKALDKLRNIAETGFFAYNLGTGVGYSVLDMVKAFEKASGKKVNYTLV
DRRSGDVATCYADATLADKKLGWKAERGIDKMCEDTWRWQSQNPNGYANK
ASFLDH

BO08542.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:51:07
Subject Length Description Subject Range Query Range Score Percent Strand
Gale-PB 350 CG12030-PB 1..350 1..350 1861 100 Plus
Gale-PA 350 CG12030-PA 1..350 1..350 1861 100 Plus