Clone Sequence Records
BO08542.3prime Sequence
893 bp (792 high quality bases) assembled on 2006-01-06
> BO08542.3prime
ATGGTCTAGAAAGCTTGCCTTGTTGGCATACCCGTTTGGGTTCTGGCTCT
GCCAGCGCCACGTGTCCTCGCACATCTTGTCGATGCCACGCTCGGCCTTC
CAGCCCAGCTTCTTATCCGCCAACGTGGCGTCCGCATAGCAAGTGGCCAC
ATCTCCGGACCGTCGGTCCACCAGAGTGTAGTTGACCTTCTTGCCGGAGG
CCTTCTCAAACGCCTTCACCATGTCCAGCACCGAGTAGCCCACGCCGGTG
CCCAAATTGTAGGCGAAAAAGCCCGTCTCCGCGATGTTGCGCAGCTTGTC
CAACGCCTTTACGTGTCCCTCGGCCAGGTCCACGATGTGGATGTAATCGC
GCACGCCGGTGCCGTCGTGCGTGGGAAAGTCGCTGCCGTAGACACTCAGG
CTGGGACGTCGACCCACGGCCACCTGTGCGATGTAGGGCATCAGGTTGTT
GGGCTCGCCGTTCGGATCCTCGCCAATCCGACCACTGATGTGGGCACCCA
CCGGGTTGAAGTACCGCAGCGAAACCACTGCCCAACGCTTGTCAGACTTG
CACAGATCCTTGAGAATCTCCTCGGTGAAATATTTAGTCTTGCCGTAGGG
CGATGTACAGTTGCCCGTGGGATGCTCCTCGGTCACGGGCAGGAACTTTG
GCTCACCGTATACGGTGGCGCTGGAGCTGTACACGAACTTGAAGACATTG
TTGTCGGCCATCGCCTCCAGCAGGACATTGGTGCCGGTCATGTTGTTGTG
GTAGTACTGCAAAGGTATGCGGCAGGACTCACCCACGGCCTTCAGGGCGG
CAAAGTGGGCCACCATGTCGATTTTGTGCTCCTGGAAGACGGAGCGCACC
TGCTCCCCTGTCGTGATGTCCACTCTATAGAAGTTGAACTTCT
BO08542.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:26:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12030-PA | 1053 | CG12030-RA | 212..1050 | 857..19 | 4195 | 100 | Minus |
CG12030-PA | 1053 | CG12030-RA | 176..207 | 893..862 | 135 | 96.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:59:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gale-RB | 1538 | CG12030-RB | 455..1329 | 893..19 | 4315 | 99.7 | Minus |
Gale-RA | 1757 | CG12030-RA | 674..1548 | 893..19 | 4315 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:58:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 650582..651102 | 539..19 | 2605 | 100 | Minus |
3L | 28110227 | 3L | 650231..650523 | 830..538 | 1465 | 100 | Minus |
3L | 28110227 | 3L | 649355..649419 | 893..829 | 250 | 92.3 | Minus |
Blast to na_te.dros performed 2015-02-10 16:58:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\HeT-A | 5691 | Dyak\HeT-A YAKHETA 5691bp | 5077..5115 | 662..700 | 123 | 79.5 | Plus |
BO08542.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:50:00 Download gff for
BO08542.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12030-PA | 176..1053 | 18..893 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:45:51 Download gff for
BO08542.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12030-PA | 176..1053 | 18..893 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:26:18 Download gff for
BO08542.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gale-RA | 674..1560 | 7..893 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:02:28 Download gff for
BO08542.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gale-RA | 674..1560 | 7..893 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:02:28 Download gff for
BO08542.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 649355..649419 | 829..893 | 95 | -> | Minus |
3L | 650233..650523 | 538..828 | 100 | -> | Minus |
3L | 650584..651114 | 7..537 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:26:18 Download gff for
BO08542.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 649355..649419 | 829..893 | 95 | -> | Minus |
arm_3L | 650233..650523 | 538..828 | 100 | -> | Minus |
arm_3L | 650584..651114 | 7..537 | 99 | | Minus |
BO08542.5prime Sequence
865 bp (803 high quality bases) assembled on 2006-01-06
> BO08542.5prime
GAAGTTATCAGTCGACATGGCCCCACCCACGGTCCTGGTCACCGGAGGAG
CCGGCTACATTGGCTCCCACACGGTTCTGGAGATGCTCAATGCGGGCTAC
AACGTCATCTGCGTGGACAACCTGTGCAACGCCTACAGCAGCGGGGCCAA
ACTGCCGGAGGCCCTCAGCCGGGTGCAGGAAATCACCGGCAAGAAGGTCA
ACTTCTATAGAGTGGACATCACGGACAGGGAGCAGGTGCGCTCCGTCTTC
CAGGAGCACAAAATCGACATGGTGGCCCACTTTGCCGCCCTGAAGGCCGT
GGGTGAGTCCTGCCGCATACCTTTGCAGTACTACCACAACAACATGACCG
GCACCAATGTCCTGCTGGAGGCGATGGCCGACAACAATGTCTTCAAGTTC
GTGTACAGCTCCAGCGCCACCGTATACGGTGAGCCAAAGTTCCTGCCCGT
GACCGAGGAGCATCCCACGGGCAACTGTACATCGCCCTACGGCAAGACTA
AATATTTCACCGAGGAGATTCTCAAGGATCTGTGCAAGTCTGACAAGCGT
TGGGCAGTGGTTTCGCTGCGGTACTTCAACCCGGTGGGTGCCCACATCAG
TGGTCGGATTGGCGAGGATCCGAACGGCGAGCCCAACAACCTGATGCCCT
ACATCGCACAGGTGGCCGTGGGTCGACGTCCCAGCCTGAGTGTCTACGGC
AGCGACTTTCCCACGCACGACGGCACCGGCGTGCGCGATTACATCCACAT
CGTGGACCTGGCCGAGGGACACGTAAAGGCGTTGGACAAGCTGCGCAACA
TCGCGGAGACGGGCTTTTTCGCCTACAATTTGGGCACCGGCGTGGGCTAC
TCGGTGCTGGACATG
BO08542.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:26:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12030-PA | 1053 | CG12030-RA | 1..849 | 17..865 | 4245 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:46:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gale-RB | 1538 | CG12030-RB | 280..1128 | 17..865 | 4245 | 100 | Plus |
Gale-RA | 1757 | CG12030-RA | 499..1347 | 17..865 | 4245 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:46:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 650582..650901 | 546..865 | 1600 | 100 | Plus |
3L | 28110227 | 3L | 650231..650523 | 255..547 | 1465 | 100 | Plus |
3L | 28110227 | 3L | 649180..649419 | 17..256 | 1200 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 05:46:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\HeT-A | 5691 | Dyak\HeT-A YAKHETA 5691bp | 5077..5115 | 423..385 | 123 | 79.5 | Minus |
BO08542.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:50:01 Download gff for
BO08542.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12030-PA | 1..849 | 17..865 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:45:52 Download gff for
BO08542.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12030-PA | 1..849 | 17..865 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:16:16 Download gff for
BO08542.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gale-RA | 495..1347 | 9..865 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:45:41 Download gff for
BO08542.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gale-RA | 495..1347 | 9..865 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:45:41 Download gff for
BO08542.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 649180..649419 | 17..256 | 100 | -> | Plus |
3L | 650233..650523 | 257..547 | 100 | -> | Plus |
3L | 650584..650901 | 548..865 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:16:16 Download gff for
BO08542.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 649180..649419 | 17..256 | 100 | -> | Plus |
arm_3L | 650233..650523 | 257..547 | 100 | -> | Plus |
arm_3L | 650584..650901 | 548..865 | 100 | | Plus |
BO08542.complete Sequence
1084 bp assembled on 2007-10-17
GenBank Submission: FJ638659
> BO08542.complete
GAAGTTATCAGTCGACATGGCCCCACCCACGGTCCTGGTCACCGGAGGAG
CCGGCTACATTGGCTCCCACACGGTTCTGGAGATGCTCAATGCGGGCTAC
AACGTCATCTGCGTGGACAACCTGTGCAACGCCTACAGCAGCGGGGCCAA
ACTGCCGGAGGCCCTCAGCCGGGTGCAGGAAATCACCGGCAAGAAGGTCA
ACTTCTATAGAGTGGACATCACGGACAGGGAGCAGGTGCGCTCCGTCTTC
CAGGAGCACAAAATCGACATGGTGGCCCACTTTGCCGCCCTGAAGGCCGT
GGGTGAGTCCTGCCGCATACCTTTGCAGTACTACCACAACAACATGACCG
GCACCAATGTCCTGCTGGAGGCGATGGCCGACAACAATGTCTTCAAGTTC
GTGTACAGCTCCAGCGCCACCGTATACGGTGAGCCAAAGTTCCTGCCCGT
GACCGAGGAGCATCCCACGGGCAACTGTACATCGCCCTACGGCAAGACTA
AATATTTCACCGAGGAGATTCTCAAGGATCTGTGCAAGTCTGACAAGCGT
TGGGCAGTGGTTTCGCTGCGGTACTTCAACCCGGTGGGTGCCCACATCAG
TGGTCGGATTGGCGAGGATCCGAACGGCGAGCCCAACAACCTGATGCCCT
ACATCGCACAGGTGGCCGTGGGTCGACGTCCCAGCCTGAGTGTCTACGGC
AGCGACTTTCCCACGCACGACGGCACCGGCGTGCGCGATTACATCCACAT
CGTGGACCTGGCCGAGGGACACGTAAAGGCGTTGGACAAGCTGCGCAACA
TCGCGGAGACGGGCTTTTTCGCCTACAATTTGGGCACCGGCGTGGGCTAC
TCGGTGCTGGACATGGTGAAGGCGTTTGAGAAGGCCTCCGGCAAGAAGGT
CAACTACACTCTGGTGGACCGACGGTCCGGAGATGTGGCCACTTGCTATG
CGGACGCCACGTTGGCGGATAAGAAGCTGGGCTGGAAGGCCGAGCGTGGC
ATCGACAAGATGTGCGAGGACACGTGGCGCTGGCAGAGCCAGAACCCAAA
CGGGTATGCCAACAAGGCAAGCTTTCTAGACCAT
BO08542.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:03:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gale-RB | 1053 | CG12030-PB | 1..1050 | 17..1066 | 5250 | 100 | Plus |
Gale-RA | 1053 | CG12030-PA | 1..1050 | 17..1066 | 5250 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:03:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gale-RB | 1538 | CG12030-RB | 280..1329 | 17..1066 | 5250 | 100 | Plus |
Gale-RA | 1757 | CG12030-RA | 499..1548 | 17..1066 | 5250 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:03:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 650582..651102 | 546..1066 | 2605 | 100 | Plus |
3L | 28110227 | 3L | 650231..650523 | 255..547 | 1465 | 100 | Plus |
3L | 28110227 | 3L | 649180..649419 | 17..256 | 1200 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 07:03:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\HeT-A | 5691 | Dyak\HeT-A YAKHETA 5691bp | 5077..5115 | 423..385 | 123 | 79.5 | Minus |
BO08542.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:55:30 Download gff for
BO08542.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12030-RA | 1..1053 | 17..1067 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:05:48 Download gff for
BO08542.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12030-RA | 533..1598 | 9..1078 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:03:56 Download gff for
BO08542.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gale-RA | 499..1548 | 17..1068 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:32:07 Download gff for
BO08542.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12030-RA | 537..1586 | 17..1068 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:02:03 Download gff for
BO08542.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gale-RA | 499..1548 | 17..1068 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:02:03 Download gff for
BO08542.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 650233..650523 | 257..547 | 100 | -> | Plus |
3L | 649180..649419 | 17..256 | 100 | -> | Plus |
3L | 650584..651102 | 548..1068 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:03:56 Download gff for
BO08542.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 649180..649419 | 17..256 | 100 | -> | Plus |
arm_3L | 650233..650523 | 257..547 | 100 | -> | Plus |
arm_3L | 650584..651102 | 548..1068 | 99 | | Plus |
BO08542.pep Sequence
Translation from 16 to 1084
> BO08542.pep
MAPPTVLVTGGAGYIGSHTVLEMLNAGYNVICVDNLCNAYSSGAKLPEAL
SRVQEITGKKVNFYRVDITDREQVRSVFQEHKIDMVAHFAALKAVGESCR
IPLQYYHNNMTGTNVLLEAMADNNVFKFVYSSSATVYGEPKFLPVTEEHP
TGNCTSPYGKTKYFTEEILKDLCKSDKRWAVVSLRYFNPVGAHISGRIGE
DPNGEPNNLMPYIAQVAVGRRPSLSVYGSDFPTHDGTGVRDYIHIVDLAE
GHVKALDKLRNIAETGFFAYNLGTGVGYSVLDMVKAFEKASGKKVNYTLV
DRRSGDVATCYADATLADKKLGWKAERGIDKMCEDTWRWQSQNPNGYANK
ASFLDH
BO08542.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:51:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gale-PB | 350 | CG12030-PB | 1..350 | 1..350 | 1861 | 100 | Plus |
Gale-PA | 350 | CG12030-PA | 1..350 | 1..350 | 1861 | 100 | Plus |