Clone BO08543 Report

Search the DGRC for BO08543

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:85
Well:43
Vector:pDNR-Dual
Associated Gene/TranscriptSu(var)2-10-RE
Protein status:BO08543.pep: validated not full length
Sequenced Size:1600

Clone Sequence Records

BO08543.3prime Sequence

928 bp (883 high quality bases) assembled on 2006-01-06

> BO08543.3prime
ATGGTCTAGAAAGCTTGCTTGCAAAAAGGGATCCAACGTACCGGATTGCT
GGGGCTGCTGTGCCGGGGTATAGGCACGTTGGCCGCCACCGCTGCCGTTC
GACGTGGAACTGGCGACGGCTTGCTTGGCGGGCGGACGACGCTTAGCCAG
CGGCATGTCGTCGTCTGAATCGCTTAACGTTAGGTCAACAGTTTCACTGT
TTGACGTTGATGTGGGCTGTTCGTCCTGTGCTGGGGACAAATCCCTCTTT
ACTGGCTTGGCGTCATCCGAGATAAGTTCTATGTCATCCGATATAACCTC
AACCTTTTGGGCGGGCTTTGAAGGCGTATCAAGGATCTGCGTCTCGCTCC
GTAGTCCTGGTGTGCTCCAAGATCCATCCTGATGAAGTTGAATCTCAGTA
TCATCACTCTTTAGAAGCGACGAGCCCAACACCTCCTGGAAGTAGCCATC
TATGACCAGGTTGTCATAAATGGCCGGCTTGTCGCATACAGGGCAGTTCC
ACGTGGGCTTACGCTCATTCATTTGCAGGTAGAGACTGGCATCGAAGCAT
TGCAGATGCGAGCAGGTTGATGCTCGACAAGGCAGCAACATTTTCATCTT
GCCCAACGGGCAGTTAAGGGAAACCTTCAGCATAGTGGTGGCTATTTCGC
AGTCAGCATCCTCAGTCAGCTTCTCTTTGATTAAGCCTCGCGTGTAGTCC
GCTGGTTTTACGCCCTTCGTCTTCATTCGCTGCAAAAGCTGTGTTGAGGT
GAGCTTCTTTACCAGGTATACGGCCAGACAGTAGCTACGAGTGTAGTCCG
GACACCACTGAACCGTTATGGTGTTGGTGACGGTAGGCGACAGCTTTACA
TTGGACGTGACATTAACGGGTCGCGGCGGACGCTTGGGCTCACATTTGGT
CGGTTGTAGGATGACATAGGCAGCTGAC

BO08543.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:26:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG8068-PH 1710 Su(var)2-10-RH 835..1707 891..19 4365 100 Minus
CG8068-PF 1602 Su(var)2-10-RF 727..1599 891..19 4365 100 Minus
CG8068-PE 1569 Su(var)2-10-RE 694..1566 891..19 4365 100 Minus
CG8068-PD 1806 Su(var)2-10-RD 835..1686 891..40 4260 100 Minus
CG8068-PC 1698 Su(var)2-10-RC 727..1578 891..40 4260 100 Minus
CG8068-PA 1665 Su(var)2-10-RA 694..1545 891..40 4260 100 Minus
CG8068-PG 1815 Su(var)2-10-RG 727..1576 891..42 4250 100 Minus
CG8068-PB 1782 Su(var)2-10-RB 694..1543 891..42 4250 100 Minus
CG8068-PI 1923 Su(var)2-10-RI 835..1684 891..42 4250 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:00:00
Subject Length Description Subject Range Query Range Score Percent Strand
Su(var)2-10-RE 2847 CG8068-RE 899..1812 928..19 4470 99.6 Minus
Su(var)2-10-RF 2548 CG8068-RF 1225..2138 928..19 4470 99.6 Minus
Su(var)2-10-RH 2943 CG8068-RH 995..1908 928..19 4470 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:59:51
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9118215..9118449 680..446 1175 100 Minus
2R 25286936 2R 9117932..9118157 905..681 1080 99.6 Minus
2R 25286936 2R 9118900..9119070 189..19 855 100 Minus
2R 25286936 2R 9118505..9118672 446..279 840 100 Minus
2R 25286936 2R 9118737..9118829 280..188 465 100 Minus
Blast to na_te.dros performed on 2015-02-12 11:59:56 has no hits.

BO08543.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:50:02 Download gff for BO08543.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8068-PF 686..1602 15..928 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:45:54 Download gff for BO08543.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8068-PH 794..1710 15..928 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:48:31 Download gff for BO08543.3prime
Subject Subject Range Query Range Percent Splice Strand
Su(var)2-10-RH 995..1913 13..928 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:44:13 Download gff for BO08543.3prime
Subject Subject Range Query Range Percent Splice Strand
Su(var)2-10-RH 995..1913 13..928 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:44:13 Download gff for BO08543.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9117912..9118157 681..922 97 -> Minus
2R 9118215..9118449 446..680 100 -> Minus
2R 9118506..9118672 279..445 100 -> Minus
2R 9118739..9118827 190..278 100 -> Minus
2R 9118900..9119075 13..189 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:48:31 Download gff for BO08543.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5005417..5005662 681..922 97 -> Minus
arm_2R 5005720..5005954 446..680 100 -> Minus
arm_2R 5006011..5006177 279..445 100 -> Minus
arm_2R 5006244..5006332 190..278 100 -> Minus
arm_2R 5006405..5006580 13..189 98   Minus

BO08543.5prime Sequence

878 bp (853 high quality bases) assembled on 2006-01-06

> BO08543.5prime
GAAGTTATCAGTCGACATGGTGCAGATGCTTCGAGTGGTCGAGCTGCAAA
AAATCCTGTCGTTTCTGAACATCTCATTCGCTGGACGAAAAACTGACCTG
CAGAGCCGCATCCTCTCGTTCTTGCGCACCAACTTGGAACTGCTTGCCCC
GAAGGTCCAGGAAGTCTACGCCCAGTCCGTGCAGGAACAAAACGCCACGC
TGCAGTACATCGACCCAACCAGGATGTACTCGCACATCCAGCTGCCGCCC
ACCGTGCAGCCCAATCCCGTGGGCCTCGTGGGCAGCGGCCAAGGTGTGCA
AGTGCCCGGCGGCCAGATGAATGTGGTCGGCGGCGCACCCTTCCTCCACA
CACACAGCATCAACAGCCAGCTGCCTATTCACCCCGATGTGCGGCTGAAA
AAGCTAGCCTTCTACGATGTACTCGGAACGCTAATTAAGCCTTCAACTCT
GGTGCCACGCAACACTCAGCGCGTCCAAGAGGTGCCTTTCTACTTCACGC
TCACGCCGCAGCAGGCCACCGAGATTGCCTCTAATCGCGACATTCGCAAC
AGCTCCAAGGTGGAGCACGCCATTCAGGTTCAACTGCGCTTTTGCCTGGT
GGAGACTTCGTGCGACCAGGAGGACTGCTTCCCGCCGAACGTAAACGTCA
AAGTGAACAACAAACTCTGTCAGCTGCCTAATGTCATTCCTACAAACCGA
CCAAATGTGGAGCCCAAGCGTCCGCCGCGACCCGTTAATGTCACGTCCAA
TGTAAAGCTGTCGCCTACCGTCACCAACACCATAACGGTTCAGTGGTGTC
CGGACTACACTCGTAGCTACTGTCTGGCCGTATACCTGGTAAAGAAGCTC
ACCTCAACACAGCTTTTGCAGCGAATGA

BO08543.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:26:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG8068-PH 1710 Su(var)2-10-RH 142..1003 17..878 4310 100 Plus
CG8068-PD 1806 Su(var)2-10-RD 142..1003 17..878 4310 100 Plus
CG8068-PC 1698 Su(var)2-10-RC 34..895 17..878 4310 100 Plus
CG8068-PF 1602 Su(var)2-10-RF 34..895 17..878 4310 100 Plus
CG8068-PG 1815 Su(var)2-10-RG 34..895 17..878 4310 100 Plus
CG8068-PE 1569 Su(var)2-10-RE 1..862 17..878 4310 100 Plus
CG8068-PB 1782 Su(var)2-10-RB 1..862 17..878 4310 100 Plus
CG8068-PA 1665 Su(var)2-10-RA 1..862 17..878 4310 100 Plus
CG8068-PI 1923 Su(var)2-10-RI 142..1003 17..878 4310 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:38:17
Subject Length Description Subject Range Query Range Score Percent Strand
Su(var)2-10-RM 2149 CG8068-RM 343..1204 17..878 4310 100 Plus
Su(var)2-10-RN 2414 CG8068-RN 343..1204 17..878 4310 100 Plus
Su(var)2-10-RL 2150 CG8068-RL 343..1204 17..878 4310 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:38:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9117190..9117852 17..679 3315 100 Plus
2R 25286936 2R 9117917..9118115 680..878 995 100 Plus
Blast to na_te.dros performed 2015-02-11 23:38:13
Subject Length Description Subject Range Query Range Score Percent Strand
Max-element 8556 Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). 6613..6641 715..687 109 86.2 Minus

BO08543.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:50:03 Download gff for BO08543.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8068-PD 137..1002 10..877 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:45:55 Download gff for BO08543.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8068-PI 137..1002 10..877 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:55:00 Download gff for BO08543.5prime
Subject Subject Range Query Range Percent Splice Strand
Su(var)2-10-RK 568..1433 10..877 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:52:33 Download gff for BO08543.5prime
Subject Subject Range Query Range Percent Splice Strand
Su(var)2-10-RL 338..1203 10..877 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:52:33 Download gff for BO08543.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9117185..9117852 10..679 99 -> Plus
2R 9117917..9118114 680..877 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:55:00 Download gff for BO08543.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5005422..5005619 680..877 100   Plus
arm_2R 5004690..5005357 10..679 99 -> Plus

BO08543.complete Sequence

1600 bp (1600 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ631231

> BO08543.complete
GAAGTTATCAGTCGACATGGTGCAGATGCTTCGAGTGGTCGAGCTGCAAA
AAATCCTGTCGTTTCTGAACATCTCATTCGCTGGACGAAAAACTGACCTG
CAGAGCCGCATCCTCTCGTTCTTGCGCACCAACTTGGAACTGCTTGCCCC
GAAGGTCCAGGAAGTCTACGCCCAGTCCGTGCAGGAACAAAACGCCACGC
TGCAGTACATCGACCCAACCAGGATGTACTCGCACATCCAGCTGCCGCCC
ACCGTGCAGCCCAATCCCGTGGGCCTCGTGGGCAGCGGCCAAGGTGTGCA
AGTGCCCGGCGGCCAGATGAATGTGGTCGGCGGCGCACCCTTCCTCCACA
CACACAGCATCAACAGCCAGCTGCCTATTCACCCCGATGTGCGGCTGAAA
AAGCTAGCCTTCTACGATGTACTCGGAACGCTAATTAAGCCTTCAACTCT
GGTGCCACGCAACACTCAGCGCGTCCAAGAGGTGCCTTTCTACTTCACGC
TCACGCCGCAGCAGGCCACCGAGATTGCCTCTAATCGCGACATTCGCAAC
AGCTCCAAGGTGGAGCACGCCATTCAGGTTCAACTGCGCTTTTGCCTGGT
GGAGACTTCGTGCGACCAGGAGGACTGCTTCCCGCCGAACGTAAACGTCA
AAGTGAACAACAAACTCTGTCAGCTGCCTAATGTCATTCCTACAAACCGA
CCAAATGTGGAGCCCAAGCGTCCGCCGCGACCCGTTAATGTCACGTCCAA
TGTAAAGCTGTCGCCTACCGTCACCAACACCATAACGGTTCAGTGGTGTC
CGGACTACACTCGTAGCTACTGTCTGGCCGTATACCTGGTAAAGAAGCTC
ACCTCAACACAGCTTTTGCAGCGAATGAAGACGAAGGGCGTAAAACCAGC
GGACTACACGCGAGGCTTAATCAAAGAGAAGCTGACTGAGGATGCTGACT
GCGAAATAGCCACCACTATGCTGAAGGTTTCCCTTAACTGCCCGTTGGGC
AAGATGAAAATGTTGCTGCCTTGTCGAGCATCAACCTGCTCGCATCTGCA
ATGCTTCGATGCCAGTCTCTACCTGCAAATGAATGAGCGTAAGCCCACGT
GGAACTGCCCTGTATGCGACAAGCCGGCCATTTATGACAACCTGGTCATA
GATGGCTACTTCCAGGAGGTGTTGGGCTCGTCGCTTCTAAAGAGTGATGA
TACTGAGATTCAACTTCATCAGGATGGATCTTGGAGCACACCAGGACTAC
GGAGCGAGACGCAGATCCTTGATACGCCTTCAAAGCCCGCCCAAAAGGTT
GAGGTTATATCGGATGACATAGAACTTATCTCGGATGACGCCAAGCCAGT
AAAGAGGGATTTGTCCCCAGCACAGGACGAACAGCCCACATCAACGTCAA
ACAGTGAAACTGTTGACCTAACGTTAAGCGATTCAGACGACGACATGCCG
CTGGCTAAGCGTCGTCCGCCCGCCAAGCAAGCCGTCGCCAGTTCCACGTC
GAACGGCAGCGGTGGCGGCCAACGTGCCTATACCCCGGCACAGCAGCCCC
AGCAATCCGGTACGTTGGATCCCTTTTTGCAAGCAAGCTTTCTAGACCAT

BO08543.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:38:38
Subject Length Description Subject Range Query Range Score Percent Strand
Su(var)2-10-RE 1569 CG8068-PE 1..1566 17..1582 7830 100 Plus
Su(var)2-10-RF 1602 CG8068-PF 34..1599 17..1582 7830 100 Plus
Su(var)2-10-RH 1710 CG8068-PH 142..1707 17..1582 7830 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:38:39
Subject Length Description Subject Range Query Range Score Percent Strand
Su(var)2-10-RE 2847 CG8068-RE 247..1812 17..1582 7830 100 Plus
Su(var)2-10-RF 2548 CG8068-RF 573..2138 17..1582 7830 100 Plus
Su(var)2-10-RH 2943 CG8068-RH 343..1908 17..1582 7830 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:38:35
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9117190..9117852 17..679 3315 100 Plus
2R 25286936 2R 9117917..9118157 680..920 1205 100 Plus
2R 25286936 2R 9118215..9118449 921..1155 1175 100 Plus
2R 25286936 2R 9118900..9119070 1412..1582 855 100 Plus
2R 25286936 2R 9118505..9118672 1155..1322 840 100 Plus
2R 25286936 2R 9118737..9118829 1321..1413 465 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:38:37 has no hits.

BO08543.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:11:50 Download gff for BO08543.complete
Subject Subject Range Query Range Percent Splice Strand
Su(var)2-10-RE 1..1569 17..1586 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:32:39 Download gff for BO08543.complete
Subject Subject Range Query Range Percent Splice Strand
Su(var)2-10-RE 240..1815 10..1588 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:48:25 Download gff for BO08543.complete
Subject Subject Range Query Range Percent Splice Strand
Su(var)2-10-RH 343..1908 17..1584 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:11:50 Download gff for BO08543.complete
Subject Subject Range Query Range Percent Splice Strand
Su(var)2-10-RE 240..1815 10..1588 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:15:53 Download gff for BO08543.complete
Subject Subject Range Query Range Percent Splice Strand
Su(var)2-10-RH 343..1908 17..1584 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:15:53 Download gff for BO08543.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9118900..9119070 1412..1584 98   Plus
2R 9117190..9117852 17..679 100 -> Plus
2R 9117917..9118157 680..920 100 -> Plus
2R 9118215..9118449 921..1155 100 -> Plus
2R 9118506..9118672 1156..1322 100 -> Plus
2R 9118739..9118827 1323..1411 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:48:25 Download gff for BO08543.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5006405..5006575 1412..1584 98   Plus
arm_2R 5005720..5005954 921..1155 100 -> Plus
arm_2R 5006011..5006177 1156..1322 100 -> Plus
arm_2R 5006244..5006332 1323..1411 100 -> Plus
arm_2R 5004695..5005357 17..679 100 -> Plus
arm_2R 5005422..5005662 680..920 100 -> Plus

BO08543.pep Sequence

Translation from 16 to 1600

> BO08543.pep
MVQMLRVVELQKILSFLNISFAGRKTDLQSRILSFLRTNLELLAPKVQEV
YAQSVQEQNATLQYIDPTRMYSHIQLPPTVQPNPVGLVGSGQGVQVPGGQ
MNVVGGAPFLHTHSINSQLPIHPDVRLKKLAFYDVLGTLIKPSTLVPRNT
QRVQEVPFYFTLTPQQATEIASNRDIRNSSKVEHAIQVQLRFCLVETSCD
QEDCFPPNVNVKVNNKLCQLPNVIPTNRPNVEPKRPPRPVNVTSNVKLSP
TVTNTITVQWCPDYTRSYCLAVYLVKKLTSTQLLQRMKTKGVKPADYTRG
LIKEKLTEDADCEIATTMLKVSLNCPLGKMKMLLPCRASTCSHLQCFDAS
LYLQMNERKPTWNCPVCDKPAIYDNLVIDGYFQEVLGSSLLKSDDTEIQL
HQDGSWSTPGLRSETQILDTPSKPAQKVEVISDDIELISDDAKPVKRDLS
PAQDEQPTSTSNSETVDLTLSDSDDDMPLAKRRPPAKQAVASSTSNGSGG
GQRAYTPAQQPQQSGTLDPFLQASFLDH

BO08543.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:44:40
Subject Length Description Subject Range Query Range Score Percent Strand
Su(var)2-10-PE 522 CG8068-PE 1..522 1..522 2716 100 Plus
Su(var)2-10-PF 533 CG8068-PF 12..533 1..522 2716 100 Plus
Su(var)2-10-PH 569 CG8068-PH 48..569 1..522 2716 100 Plus
Su(var)2-10-PM 570 CG8068-PM 48..562 1..515 2679 100 Plus
Su(var)2-10-PA 554 CG8068-PA 1..515 1..515 2679 100 Plus