Clone Sequence Records
BO08543.3prime Sequence
928 bp (883 high quality bases) assembled on 2006-01-06
> BO08543.3prime
ATGGTCTAGAAAGCTTGCTTGCAAAAAGGGATCCAACGTACCGGATTGCT
GGGGCTGCTGTGCCGGGGTATAGGCACGTTGGCCGCCACCGCTGCCGTTC
GACGTGGAACTGGCGACGGCTTGCTTGGCGGGCGGACGACGCTTAGCCAG
CGGCATGTCGTCGTCTGAATCGCTTAACGTTAGGTCAACAGTTTCACTGT
TTGACGTTGATGTGGGCTGTTCGTCCTGTGCTGGGGACAAATCCCTCTTT
ACTGGCTTGGCGTCATCCGAGATAAGTTCTATGTCATCCGATATAACCTC
AACCTTTTGGGCGGGCTTTGAAGGCGTATCAAGGATCTGCGTCTCGCTCC
GTAGTCCTGGTGTGCTCCAAGATCCATCCTGATGAAGTTGAATCTCAGTA
TCATCACTCTTTAGAAGCGACGAGCCCAACACCTCCTGGAAGTAGCCATC
TATGACCAGGTTGTCATAAATGGCCGGCTTGTCGCATACAGGGCAGTTCC
ACGTGGGCTTACGCTCATTCATTTGCAGGTAGAGACTGGCATCGAAGCAT
TGCAGATGCGAGCAGGTTGATGCTCGACAAGGCAGCAACATTTTCATCTT
GCCCAACGGGCAGTTAAGGGAAACCTTCAGCATAGTGGTGGCTATTTCGC
AGTCAGCATCCTCAGTCAGCTTCTCTTTGATTAAGCCTCGCGTGTAGTCC
GCTGGTTTTACGCCCTTCGTCTTCATTCGCTGCAAAAGCTGTGTTGAGGT
GAGCTTCTTTACCAGGTATACGGCCAGACAGTAGCTACGAGTGTAGTCCG
GACACCACTGAACCGTTATGGTGTTGGTGACGGTAGGCGACAGCTTTACA
TTGGACGTGACATTAACGGGTCGCGGCGGACGCTTGGGCTCACATTTGGT
CGGTTGTAGGATGACATAGGCAGCTGAC
BO08543.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:26:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8068-PH | 1710 | Su(var)2-10-RH | 835..1707 | 891..19 | 4365 | 100 | Minus |
CG8068-PF | 1602 | Su(var)2-10-RF | 727..1599 | 891..19 | 4365 | 100 | Minus |
CG8068-PE | 1569 | Su(var)2-10-RE | 694..1566 | 891..19 | 4365 | 100 | Minus |
CG8068-PD | 1806 | Su(var)2-10-RD | 835..1686 | 891..40 | 4260 | 100 | Minus |
CG8068-PC | 1698 | Su(var)2-10-RC | 727..1578 | 891..40 | 4260 | 100 | Minus |
CG8068-PA | 1665 | Su(var)2-10-RA | 694..1545 | 891..40 | 4260 | 100 | Minus |
CG8068-PG | 1815 | Su(var)2-10-RG | 727..1576 | 891..42 | 4250 | 100 | Minus |
CG8068-PB | 1782 | Su(var)2-10-RB | 694..1543 | 891..42 | 4250 | 100 | Minus |
CG8068-PI | 1923 | Su(var)2-10-RI | 835..1684 | 891..42 | 4250 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:00:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Su(var)2-10-RE | 2847 | CG8068-RE | 899..1812 | 928..19 | 4470 | 99.6 | Minus |
Su(var)2-10-RF | 2548 | CG8068-RF | 1225..2138 | 928..19 | 4470 | 99.6 | Minus |
Su(var)2-10-RH | 2943 | CG8068-RH | 995..1908 | 928..19 | 4470 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:59:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9118215..9118449 | 680..446 | 1175 | 100 | Minus |
2R | 25286936 | 2R | 9117932..9118157 | 905..681 | 1080 | 99.6 | Minus |
2R | 25286936 | 2R | 9118900..9119070 | 189..19 | 855 | 100 | Minus |
2R | 25286936 | 2R | 9118505..9118672 | 446..279 | 840 | 100 | Minus |
2R | 25286936 | 2R | 9118737..9118829 | 280..188 | 465 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:59:56 has no hits.
BO08543.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:50:02 Download gff for
BO08543.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8068-PF | 686..1602 | 15..928 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:45:54 Download gff for
BO08543.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8068-PH | 794..1710 | 15..928 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:48:31 Download gff for
BO08543.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Su(var)2-10-RH | 995..1913 | 13..928 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:44:13 Download gff for
BO08543.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Su(var)2-10-RH | 995..1913 | 13..928 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:44:13 Download gff for
BO08543.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9117912..9118157 | 681..922 | 97 | -> | Minus |
2R | 9118215..9118449 | 446..680 | 100 | -> | Minus |
2R | 9118506..9118672 | 279..445 | 100 | -> | Minus |
2R | 9118739..9118827 | 190..278 | 100 | -> | Minus |
2R | 9118900..9119075 | 13..189 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:48:31 Download gff for
BO08543.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5005417..5005662 | 681..922 | 97 | -> | Minus |
arm_2R | 5005720..5005954 | 446..680 | 100 | -> | Minus |
arm_2R | 5006011..5006177 | 279..445 | 100 | -> | Minus |
arm_2R | 5006244..5006332 | 190..278 | 100 | -> | Minus |
arm_2R | 5006405..5006580 | 13..189 | 98 | | Minus |
BO08543.5prime Sequence
878 bp (853 high quality bases) assembled on 2006-01-06
> BO08543.5prime
GAAGTTATCAGTCGACATGGTGCAGATGCTTCGAGTGGTCGAGCTGCAAA
AAATCCTGTCGTTTCTGAACATCTCATTCGCTGGACGAAAAACTGACCTG
CAGAGCCGCATCCTCTCGTTCTTGCGCACCAACTTGGAACTGCTTGCCCC
GAAGGTCCAGGAAGTCTACGCCCAGTCCGTGCAGGAACAAAACGCCACGC
TGCAGTACATCGACCCAACCAGGATGTACTCGCACATCCAGCTGCCGCCC
ACCGTGCAGCCCAATCCCGTGGGCCTCGTGGGCAGCGGCCAAGGTGTGCA
AGTGCCCGGCGGCCAGATGAATGTGGTCGGCGGCGCACCCTTCCTCCACA
CACACAGCATCAACAGCCAGCTGCCTATTCACCCCGATGTGCGGCTGAAA
AAGCTAGCCTTCTACGATGTACTCGGAACGCTAATTAAGCCTTCAACTCT
GGTGCCACGCAACACTCAGCGCGTCCAAGAGGTGCCTTTCTACTTCACGC
TCACGCCGCAGCAGGCCACCGAGATTGCCTCTAATCGCGACATTCGCAAC
AGCTCCAAGGTGGAGCACGCCATTCAGGTTCAACTGCGCTTTTGCCTGGT
GGAGACTTCGTGCGACCAGGAGGACTGCTTCCCGCCGAACGTAAACGTCA
AAGTGAACAACAAACTCTGTCAGCTGCCTAATGTCATTCCTACAAACCGA
CCAAATGTGGAGCCCAAGCGTCCGCCGCGACCCGTTAATGTCACGTCCAA
TGTAAAGCTGTCGCCTACCGTCACCAACACCATAACGGTTCAGTGGTGTC
CGGACTACACTCGTAGCTACTGTCTGGCCGTATACCTGGTAAAGAAGCTC
ACCTCAACACAGCTTTTGCAGCGAATGA
BO08543.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:26:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8068-PH | 1710 | Su(var)2-10-RH | 142..1003 | 17..878 | 4310 | 100 | Plus |
CG8068-PD | 1806 | Su(var)2-10-RD | 142..1003 | 17..878 | 4310 | 100 | Plus |
CG8068-PC | 1698 | Su(var)2-10-RC | 34..895 | 17..878 | 4310 | 100 | Plus |
CG8068-PF | 1602 | Su(var)2-10-RF | 34..895 | 17..878 | 4310 | 100 | Plus |
CG8068-PG | 1815 | Su(var)2-10-RG | 34..895 | 17..878 | 4310 | 100 | Plus |
CG8068-PE | 1569 | Su(var)2-10-RE | 1..862 | 17..878 | 4310 | 100 | Plus |
CG8068-PB | 1782 | Su(var)2-10-RB | 1..862 | 17..878 | 4310 | 100 | Plus |
CG8068-PA | 1665 | Su(var)2-10-RA | 1..862 | 17..878 | 4310 | 100 | Plus |
CG8068-PI | 1923 | Su(var)2-10-RI | 142..1003 | 17..878 | 4310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:38:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Su(var)2-10-RM | 2149 | CG8068-RM | 343..1204 | 17..878 | 4310 | 100 | Plus |
Su(var)2-10-RN | 2414 | CG8068-RN | 343..1204 | 17..878 | 4310 | 100 | Plus |
Su(var)2-10-RL | 2150 | CG8068-RL | 343..1204 | 17..878 | 4310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:38:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9117190..9117852 | 17..679 | 3315 | 100 | Plus |
2R | 25286936 | 2R | 9117917..9118115 | 680..878 | 995 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 23:38:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Max-element | 8556 | Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). | 6613..6641 | 715..687 | 109 | 86.2 | Minus |
BO08543.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:50:03 Download gff for
BO08543.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8068-PD | 137..1002 | 10..877 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:45:55 Download gff for
BO08543.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8068-PI | 137..1002 | 10..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:55:00 Download gff for
BO08543.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Su(var)2-10-RK | 568..1433 | 10..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:52:33 Download gff for
BO08543.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Su(var)2-10-RL | 338..1203 | 10..877 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:52:33 Download gff for
BO08543.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9117185..9117852 | 10..679 | 99 | -> | Plus |
2R | 9117917..9118114 | 680..877 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:55:00 Download gff for
BO08543.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5005422..5005619 | 680..877 | 100 | | Plus |
arm_2R | 5004690..5005357 | 10..679 | 99 | -> | Plus |
BO08543.complete Sequence
1600 bp (1600 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631231
> BO08543.complete
GAAGTTATCAGTCGACATGGTGCAGATGCTTCGAGTGGTCGAGCTGCAAA
AAATCCTGTCGTTTCTGAACATCTCATTCGCTGGACGAAAAACTGACCTG
CAGAGCCGCATCCTCTCGTTCTTGCGCACCAACTTGGAACTGCTTGCCCC
GAAGGTCCAGGAAGTCTACGCCCAGTCCGTGCAGGAACAAAACGCCACGC
TGCAGTACATCGACCCAACCAGGATGTACTCGCACATCCAGCTGCCGCCC
ACCGTGCAGCCCAATCCCGTGGGCCTCGTGGGCAGCGGCCAAGGTGTGCA
AGTGCCCGGCGGCCAGATGAATGTGGTCGGCGGCGCACCCTTCCTCCACA
CACACAGCATCAACAGCCAGCTGCCTATTCACCCCGATGTGCGGCTGAAA
AAGCTAGCCTTCTACGATGTACTCGGAACGCTAATTAAGCCTTCAACTCT
GGTGCCACGCAACACTCAGCGCGTCCAAGAGGTGCCTTTCTACTTCACGC
TCACGCCGCAGCAGGCCACCGAGATTGCCTCTAATCGCGACATTCGCAAC
AGCTCCAAGGTGGAGCACGCCATTCAGGTTCAACTGCGCTTTTGCCTGGT
GGAGACTTCGTGCGACCAGGAGGACTGCTTCCCGCCGAACGTAAACGTCA
AAGTGAACAACAAACTCTGTCAGCTGCCTAATGTCATTCCTACAAACCGA
CCAAATGTGGAGCCCAAGCGTCCGCCGCGACCCGTTAATGTCACGTCCAA
TGTAAAGCTGTCGCCTACCGTCACCAACACCATAACGGTTCAGTGGTGTC
CGGACTACACTCGTAGCTACTGTCTGGCCGTATACCTGGTAAAGAAGCTC
ACCTCAACACAGCTTTTGCAGCGAATGAAGACGAAGGGCGTAAAACCAGC
GGACTACACGCGAGGCTTAATCAAAGAGAAGCTGACTGAGGATGCTGACT
GCGAAATAGCCACCACTATGCTGAAGGTTTCCCTTAACTGCCCGTTGGGC
AAGATGAAAATGTTGCTGCCTTGTCGAGCATCAACCTGCTCGCATCTGCA
ATGCTTCGATGCCAGTCTCTACCTGCAAATGAATGAGCGTAAGCCCACGT
GGAACTGCCCTGTATGCGACAAGCCGGCCATTTATGACAACCTGGTCATA
GATGGCTACTTCCAGGAGGTGTTGGGCTCGTCGCTTCTAAAGAGTGATGA
TACTGAGATTCAACTTCATCAGGATGGATCTTGGAGCACACCAGGACTAC
GGAGCGAGACGCAGATCCTTGATACGCCTTCAAAGCCCGCCCAAAAGGTT
GAGGTTATATCGGATGACATAGAACTTATCTCGGATGACGCCAAGCCAGT
AAAGAGGGATTTGTCCCCAGCACAGGACGAACAGCCCACATCAACGTCAA
ACAGTGAAACTGTTGACCTAACGTTAAGCGATTCAGACGACGACATGCCG
CTGGCTAAGCGTCGTCCGCCCGCCAAGCAAGCCGTCGCCAGTTCCACGTC
GAACGGCAGCGGTGGCGGCCAACGTGCCTATACCCCGGCACAGCAGCCCC
AGCAATCCGGTACGTTGGATCCCTTTTTGCAAGCAAGCTTTCTAGACCAT
BO08543.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:38:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Su(var)2-10-RE | 1569 | CG8068-PE | 1..1566 | 17..1582 | 7830 | 100 | Plus |
Su(var)2-10-RF | 1602 | CG8068-PF | 34..1599 | 17..1582 | 7830 | 100 | Plus |
Su(var)2-10-RH | 1710 | CG8068-PH | 142..1707 | 17..1582 | 7830 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:38:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Su(var)2-10-RE | 2847 | CG8068-RE | 247..1812 | 17..1582 | 7830 | 100 | Plus |
Su(var)2-10-RF | 2548 | CG8068-RF | 573..2138 | 17..1582 | 7830 | 100 | Plus |
Su(var)2-10-RH | 2943 | CG8068-RH | 343..1908 | 17..1582 | 7830 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:38:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9117190..9117852 | 17..679 | 3315 | 100 | Plus |
2R | 25286936 | 2R | 9117917..9118157 | 680..920 | 1205 | 100 | Plus |
2R | 25286936 | 2R | 9118215..9118449 | 921..1155 | 1175 | 100 | Plus |
2R | 25286936 | 2R | 9118900..9119070 | 1412..1582 | 855 | 100 | Plus |
2R | 25286936 | 2R | 9118505..9118672 | 1155..1322 | 840 | 100 | Plus |
2R | 25286936 | 2R | 9118737..9118829 | 1321..1413 | 465 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:38:37 has no hits.
BO08543.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:11:50 Download gff for
BO08543.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Su(var)2-10-RE | 1..1569 | 17..1586 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:32:39 Download gff for
BO08543.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Su(var)2-10-RE | 240..1815 | 10..1588 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:48:25 Download gff for
BO08543.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Su(var)2-10-RH | 343..1908 | 17..1584 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:11:50 Download gff for
BO08543.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Su(var)2-10-RE | 240..1815 | 10..1588 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:15:53 Download gff for
BO08543.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Su(var)2-10-RH | 343..1908 | 17..1584 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:15:53 Download gff for
BO08543.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9118900..9119070 | 1412..1584 | 98 | | Plus |
2R | 9117190..9117852 | 17..679 | 100 | -> | Plus |
2R | 9117917..9118157 | 680..920 | 100 | -> | Plus |
2R | 9118215..9118449 | 921..1155 | 100 | -> | Plus |
2R | 9118506..9118672 | 1156..1322 | 100 | -> | Plus |
2R | 9118739..9118827 | 1323..1411 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:48:25 Download gff for
BO08543.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5006405..5006575 | 1412..1584 | 98 | | Plus |
arm_2R | 5005720..5005954 | 921..1155 | 100 | -> | Plus |
arm_2R | 5006011..5006177 | 1156..1322 | 100 | -> | Plus |
arm_2R | 5006244..5006332 | 1323..1411 | 100 | -> | Plus |
arm_2R | 5004695..5005357 | 17..679 | 100 | -> | Plus |
arm_2R | 5005422..5005662 | 680..920 | 100 | -> | Plus |
BO08543.pep Sequence
Translation from 16 to 1600
> BO08543.pep
MVQMLRVVELQKILSFLNISFAGRKTDLQSRILSFLRTNLELLAPKVQEV
YAQSVQEQNATLQYIDPTRMYSHIQLPPTVQPNPVGLVGSGQGVQVPGGQ
MNVVGGAPFLHTHSINSQLPIHPDVRLKKLAFYDVLGTLIKPSTLVPRNT
QRVQEVPFYFTLTPQQATEIASNRDIRNSSKVEHAIQVQLRFCLVETSCD
QEDCFPPNVNVKVNNKLCQLPNVIPTNRPNVEPKRPPRPVNVTSNVKLSP
TVTNTITVQWCPDYTRSYCLAVYLVKKLTSTQLLQRMKTKGVKPADYTRG
LIKEKLTEDADCEIATTMLKVSLNCPLGKMKMLLPCRASTCSHLQCFDAS
LYLQMNERKPTWNCPVCDKPAIYDNLVIDGYFQEVLGSSLLKSDDTEIQL
HQDGSWSTPGLRSETQILDTPSKPAQKVEVISDDIELISDDAKPVKRDLS
PAQDEQPTSTSNSETVDLTLSDSDDDMPLAKRRPPAKQAVASSTSNGSGG
GQRAYTPAQQPQQSGTLDPFLQASFLDH
BO08543.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:44:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Su(var)2-10-PE | 522 | CG8068-PE | 1..522 | 1..522 | 2716 | 100 | Plus |
Su(var)2-10-PF | 533 | CG8068-PF | 12..533 | 1..522 | 2716 | 100 | Plus |
Su(var)2-10-PH | 569 | CG8068-PH | 48..569 | 1..522 | 2716 | 100 | Plus |
Su(var)2-10-PM | 570 | CG8068-PM | 48..562 | 1..515 | 2679 | 100 | Plus |
Su(var)2-10-PA | 554 | CG8068-PA | 1..515 | 1..515 | 2679 | 100 | Plus |