Clone BO08544 Report

Search the DGRC for BO08544

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:85
Well:44
Vector:pDNR-Dual
Associated Gene/TranscriptVti1-RA
Protein status:BO08544.pep: validated full length
Sequenced Size:724

Clone Sequence Records

BO08544.3prime Sequence

722 bp (721 high quality bases) assembled on 2006-01-06

> BO08544.3prime
ATGGTCTAGAAAGCTTGCCGACGAGGCGGTGCTGCTTGAACTGGGTGCGA
AGGTCAGATAGAGACTGACGCCCACGGCCACCACAAAGCAGACACCCACT
CCATACAAGACCACCTTCTCCCGCAGGGCTCTTAACATCATGGTATTCAG
AGTGCGAGAAGCTCTTCCCAGCTCGGCATTGGTTTCTCGAAGTCGAGCCC
TGGCTCCCTGTAGAGTTTCCCTTTGGTGGTGCAGATCATTTAGGACCTGG
GCGCCCAGTTGCTCCGTCTCCAAGGCCACTCTGTACCCTTCGGTTAACCT
GTTGCCCGTCCGTTCAATCCTTTCCGAGTTGTCCAAGAGGCGTTGGCGTT
GATCTGTACTTATGGACACATCCTCATAGCTGTCACCCAAGTCCAGAGTG
GTGAATGTGTTGGCTTGGGAGCGCTGTTTGTCCTTGGTCAACCTGTACTC
CGCCTGCAGCCGTTTCAGTTCTGCCTGGGCCACCTGCAGCTTTCCGTTGA
AGCTGCTCCGCAGTCCAGGATTTAGCTCCCTCACCTCCAGACCCATCTGC
TCCAGCAATTCCTGAGCCTCGGGCAAACTGGAGTCGATCTTGCTGCACAA
ATCATGGCGCTCGCTGTTGTTGTTTTGCTGCTGCAGCCGTCCAATATGGG
CCGTTATTTCTGCTATTAACGTGGCGTATTGCTGTTCGTATTGCTCCAGA
AGCGACATGTCGACTGATAACT

BO08544.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:26:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG3279-PA 693 CG3279-RA 1..690 708..19 3450 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:01:46
Subject Length Description Subject Range Query Range Score Percent Strand
Vti1-RA 1370 CG3279-RA 142..831 708..19 3450 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:01:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 692025..692620 19..614 2980 100 Plus
3L 28110227 3L 692670..692778 600..708 485 96.3 Plus
Blast to na_te.dros performed on 2015-02-11 18:01:43 has no hits.

BO08544.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:50:04 Download gff for BO08544.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3279-PA 1..693 18..708 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:45:56 Download gff for BO08544.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3279-PA 1..693 18..708 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:32:58 Download gff for BO08544.3prime
Subject Subject Range Query Range Percent Splice Strand
Vti1-RA 137..831 19..716 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:37:06 Download gff for BO08544.3prime
Subject Subject Range Query Range Percent Splice Strand
Vti1-RA 137..831 19..716 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:37:06 Download gff for BO08544.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 692025..692620 19..614 100 <- Plus
3L 692685..692783 615..716 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:32:58 Download gff for BO08544.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 692025..692620 19..614 100 <- Plus
arm_3L 692685..692783 615..716 96   Plus

BO08544.5prime Sequence

722 bp (721 high quality bases) assembled on 2006-01-06

> BO08544.5prime
GAAGTTATCAGTCGACATGTCGCTTCTGGAGCAATACGAACAGCAATACG
CCACGTTAATAGCAGAAATAACGGCCCATATTGGACGGCTGCAGCAGCAA
AACAACAACAGCGAGCGCCATGATTTGTGCAGCAAGATCGACTCCAGTTT
GCCCGAGGCTCAGGAATTGCTGGAGCAGATGGGTCTGGAGGTGAGGGAGC
TAAATCCTGGACTGCGGAGCAGCTTCAACGGAAAGCTGCAGGTGGCCCAG
GCAGAACTGAAACGGCTGCAGGCGGAGTACAGGTTGACCAAGGACAAACA
GCGCTCCCAAGCCAACACATTCACCACTCTGGACTTGGGTGACAGCTATG
AGGATGTGTCCATAAGTACAGATCAACGCCAACGCCTCTTGGACAACTCG
GAAAGGATTGAACGGACGGGCAACAGGTTAACCGAAGGGTACAGAGTGGC
CTTGGAGACGGAGCAACTGGGCGCCCAGGTCCTAAATGATCTGCACCACC
AAAGGGAAACTCTACAGGGAGCCAGGGCTCGACTTCGAGAAACCAATGCC
GAGCTGGGAAGAGCTTCTCGCACTCTGAATACCATGATGTTAAGAGCCCT
GCGGGAGAAGGTGGTCTTGTATGGAGTGGGTGTCTGCTTTGTGGTGGCCG
TGGGCGTCAGTCTCTATCTGACCTTCGCACCCAGTTCAAGCAGCACCGCC
TCGTCGGCAAGCTTTCTAGACC

BO08544.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:26:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG3279-PA 693 CG3279-RA 1..690 17..706 3450 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:09:44
Subject Length Description Subject Range Query Range Score Percent Strand
Vti1-RA 1370 CG3279-RA 142..831 17..706 3450 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:09:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 692025..692620 706..111 2980 100 Minus
3L 28110227 3L 692670..692778 125..17 485 96.3 Minus
Blast to na_te.dros performed on 2015-02-12 12:09:41 has no hits.

BO08544.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:50:05 Download gff for BO08544.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3279-PA 1..693 17..707 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:45:58 Download gff for BO08544.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3279-PA 1..693 17..707 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:57:24 Download gff for BO08544.5prime
Subject Subject Range Query Range Percent Splice Strand
Vti1-RA 137..831 9..706 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:55:25 Download gff for BO08544.5prime
Subject Subject Range Query Range Percent Splice Strand
Vti1-RA 137..831 9..706 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:55:25 Download gff for BO08544.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 692025..692620 111..706 100 <- Minus
3L 692685..692783 9..110 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:57:24 Download gff for BO08544.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 692025..692620 111..706 100 <- Minus
arm_3L 692685..692783 9..110 96   Minus

BO08544.complete Sequence

724 bp (724 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ631232

> BO08544.complete
GAAGTTATCAGTCGACATGTCGCTTCTGGAGCAATACGAACAGCAATACG
CCACGTTAATAGCAGAAATAACGGCCCATATTGGACGGCTGCAGCAGCAA
AACAACAACAGCGAGCGCCATGATTTGTGCAGCAAGATCGACTCCAGTTT
GCCCGAGGCTCAGGAATTGCTGGAGCAGATGGGTCTGGAGGTGAGGGAGC
TAAATCCTGGACTGCGGAGCAGCTTCAACGGAAAGCTGCAGGTGGCCCAG
GCAGAACTGAAACGGCTGCAGGCGGAGTACAGGTTGACCAAGGACAAACA
GCGCTCCCAAGCCAACACATTCACCACTCTGGACTTGGGTGACAGCTATG
AGGATGTGTCCATAAGTACAGATCAACGCCAACGCCTCTTGGACAACTCG
GAAAGGATTGAACGGACGGGCAACAGGTTAACCGAAGGGTACAGAGTGGC
CTTGGAGACGGAGCAACTGGGCGCCCAGGTCCTAAATGATCTGCACCACC
AAAGGGAAACTCTACAGGGAGCCAGGGCTCGACTTCGAGAAACCAATGCC
GAGCTGGGAAGAGCTTCTCGCACTCTGAATACCATGATGTTAAGAGCCCT
GCGGGAGAAGGTGGTCTTGTATGGAGTGGGTGTCTGCTTTGTGGTGGCCG
TGGGCGTCAGTCTCTATCTGACCTTCGCACCCAGTTCAAGCAGCACCGCC
TCGTCGGCAAGCTTTCTAGACCAT

BO08544.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:36:21
Subject Length Description Subject Range Query Range Score Percent Strand
Vti1-RA 693 CG3279-PA 1..690 17..706 3450 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:36:22
Subject Length Description Subject Range Query Range Score Percent Strand
Vti1-RA 1370 CG3279-RA 142..831 17..706 3450 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:36:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 692025..692620 706..111 2980 100 Minus
3L 28110227 3L 692670..692778 125..17 485 96.3 Minus
Blast to na_te.dros performed on 2014-11-27 07:36:19 has no hits.

BO08544.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:00:36 Download gff for BO08544.complete
Subject Subject Range Query Range Percent Splice Strand
CG3279-RA 1..693 17..707 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:32:42 Download gff for BO08544.complete
Subject Subject Range Query Range Percent Splice Strand
CG3279-RA 133..827 9..706 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:24:05 Download gff for BO08544.complete
Subject Subject Range Query Range Percent Splice Strand
Vti1-RA 142..831 17..708 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:00:36 Download gff for BO08544.complete
Subject Subject Range Query Range Percent Splice Strand
CG3279-RA 133..827 9..706 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:01:29 Download gff for BO08544.complete
Subject Subject Range Query Range Percent Splice Strand
Vti1-RA 142..831 17..708 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:01:29 Download gff for BO08544.complete
Subject Subject Range Query Range Percent Splice Strand
3L 692023..692620 111..708 99 <- Minus
3L 692685..692778 17..110 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:24:05 Download gff for BO08544.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 692023..692620 111..708 99 <- Minus
arm_3L 692685..692778 17..110 100   Minus

BO08544.pep Sequence

Translation from 16 to 724

> BO08544.pep
MSLLEQYEQQYATLIAEITAHIGRLQQQNNNSERHDLCSKIDSSLPEAQE
LLEQMGLEVRELNPGLRSSFNGKLQVAQAELKRLQAEYRLTKDKQRSQAN
TFTTLDLGDSYEDVSISTDQRQRLLDNSERIERTGNRLTEGYRVALETEQ
LGAQVLNDLHHQRETLQGARARLRETNAELGRASRTLNTMMLRALREKVV
LYGVGVCFVVAVGVSLYLTFAPSSSSTASSASFLDH

BO08544.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:40:11
Subject Length Description Subject Range Query Range Score Percent Strand
Vti1-PA 230 CG3279-PA 1..230 1..230 1137 100 Plus