Clone Sequence Records
BO08544.3prime Sequence
722 bp (721 high quality bases) assembled on 2006-01-06
> BO08544.3prime
ATGGTCTAGAAAGCTTGCCGACGAGGCGGTGCTGCTTGAACTGGGTGCGA
AGGTCAGATAGAGACTGACGCCCACGGCCACCACAAAGCAGACACCCACT
CCATACAAGACCACCTTCTCCCGCAGGGCTCTTAACATCATGGTATTCAG
AGTGCGAGAAGCTCTTCCCAGCTCGGCATTGGTTTCTCGAAGTCGAGCCC
TGGCTCCCTGTAGAGTTTCCCTTTGGTGGTGCAGATCATTTAGGACCTGG
GCGCCCAGTTGCTCCGTCTCCAAGGCCACTCTGTACCCTTCGGTTAACCT
GTTGCCCGTCCGTTCAATCCTTTCCGAGTTGTCCAAGAGGCGTTGGCGTT
GATCTGTACTTATGGACACATCCTCATAGCTGTCACCCAAGTCCAGAGTG
GTGAATGTGTTGGCTTGGGAGCGCTGTTTGTCCTTGGTCAACCTGTACTC
CGCCTGCAGCCGTTTCAGTTCTGCCTGGGCCACCTGCAGCTTTCCGTTGA
AGCTGCTCCGCAGTCCAGGATTTAGCTCCCTCACCTCCAGACCCATCTGC
TCCAGCAATTCCTGAGCCTCGGGCAAACTGGAGTCGATCTTGCTGCACAA
ATCATGGCGCTCGCTGTTGTTGTTTTGCTGCTGCAGCCGTCCAATATGGG
CCGTTATTTCTGCTATTAACGTGGCGTATTGCTGTTCGTATTGCTCCAGA
AGCGACATGTCGACTGATAACT
BO08544.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:26:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3279-PA | 693 | CG3279-RA | 1..690 | 708..19 | 3450 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:01:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vti1-RA | 1370 | CG3279-RA | 142..831 | 708..19 | 3450 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:01:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 692025..692620 | 19..614 | 2980 | 100 | Plus |
3L | 28110227 | 3L | 692670..692778 | 600..708 | 485 | 96.3 | Plus |
Blast to na_te.dros performed on 2015-02-11 18:01:43 has no hits.
BO08544.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:50:04 Download gff for
BO08544.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3279-PA | 1..693 | 18..708 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:45:56 Download gff for
BO08544.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3279-PA | 1..693 | 18..708 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:32:58 Download gff for
BO08544.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vti1-RA | 137..831 | 19..716 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:37:06 Download gff for
BO08544.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vti1-RA | 137..831 | 19..716 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:37:06 Download gff for
BO08544.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 692025..692620 | 19..614 | 100 | <- | Plus |
3L | 692685..692783 | 615..716 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:32:58 Download gff for
BO08544.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 692025..692620 | 19..614 | 100 | <- | Plus |
arm_3L | 692685..692783 | 615..716 | 96 | | Plus |
BO08544.5prime Sequence
722 bp (721 high quality bases) assembled on 2006-01-06
> BO08544.5prime
GAAGTTATCAGTCGACATGTCGCTTCTGGAGCAATACGAACAGCAATACG
CCACGTTAATAGCAGAAATAACGGCCCATATTGGACGGCTGCAGCAGCAA
AACAACAACAGCGAGCGCCATGATTTGTGCAGCAAGATCGACTCCAGTTT
GCCCGAGGCTCAGGAATTGCTGGAGCAGATGGGTCTGGAGGTGAGGGAGC
TAAATCCTGGACTGCGGAGCAGCTTCAACGGAAAGCTGCAGGTGGCCCAG
GCAGAACTGAAACGGCTGCAGGCGGAGTACAGGTTGACCAAGGACAAACA
GCGCTCCCAAGCCAACACATTCACCACTCTGGACTTGGGTGACAGCTATG
AGGATGTGTCCATAAGTACAGATCAACGCCAACGCCTCTTGGACAACTCG
GAAAGGATTGAACGGACGGGCAACAGGTTAACCGAAGGGTACAGAGTGGC
CTTGGAGACGGAGCAACTGGGCGCCCAGGTCCTAAATGATCTGCACCACC
AAAGGGAAACTCTACAGGGAGCCAGGGCTCGACTTCGAGAAACCAATGCC
GAGCTGGGAAGAGCTTCTCGCACTCTGAATACCATGATGTTAAGAGCCCT
GCGGGAGAAGGTGGTCTTGTATGGAGTGGGTGTCTGCTTTGTGGTGGCCG
TGGGCGTCAGTCTCTATCTGACCTTCGCACCCAGTTCAAGCAGCACCGCC
TCGTCGGCAAGCTTTCTAGACC
BO08544.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:26:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3279-PA | 693 | CG3279-RA | 1..690 | 17..706 | 3450 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:09:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vti1-RA | 1370 | CG3279-RA | 142..831 | 17..706 | 3450 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:09:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 692025..692620 | 706..111 | 2980 | 100 | Minus |
3L | 28110227 | 3L | 692670..692778 | 125..17 | 485 | 96.3 | Minus |
Blast to na_te.dros performed on 2015-02-12 12:09:41 has no hits.
BO08544.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:50:05 Download gff for
BO08544.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3279-PA | 1..693 | 17..707 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:45:58 Download gff for
BO08544.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3279-PA | 1..693 | 17..707 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:57:24 Download gff for
BO08544.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vti1-RA | 137..831 | 9..706 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:55:25 Download gff for
BO08544.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vti1-RA | 137..831 | 9..706 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:55:25 Download gff for
BO08544.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 692025..692620 | 111..706 | 100 | <- | Minus |
3L | 692685..692783 | 9..110 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:57:24 Download gff for
BO08544.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 692025..692620 | 111..706 | 100 | <- | Minus |
arm_3L | 692685..692783 | 9..110 | 96 | | Minus |
BO08544.complete Sequence
724 bp (724 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631232
> BO08544.complete
GAAGTTATCAGTCGACATGTCGCTTCTGGAGCAATACGAACAGCAATACG
CCACGTTAATAGCAGAAATAACGGCCCATATTGGACGGCTGCAGCAGCAA
AACAACAACAGCGAGCGCCATGATTTGTGCAGCAAGATCGACTCCAGTTT
GCCCGAGGCTCAGGAATTGCTGGAGCAGATGGGTCTGGAGGTGAGGGAGC
TAAATCCTGGACTGCGGAGCAGCTTCAACGGAAAGCTGCAGGTGGCCCAG
GCAGAACTGAAACGGCTGCAGGCGGAGTACAGGTTGACCAAGGACAAACA
GCGCTCCCAAGCCAACACATTCACCACTCTGGACTTGGGTGACAGCTATG
AGGATGTGTCCATAAGTACAGATCAACGCCAACGCCTCTTGGACAACTCG
GAAAGGATTGAACGGACGGGCAACAGGTTAACCGAAGGGTACAGAGTGGC
CTTGGAGACGGAGCAACTGGGCGCCCAGGTCCTAAATGATCTGCACCACC
AAAGGGAAACTCTACAGGGAGCCAGGGCTCGACTTCGAGAAACCAATGCC
GAGCTGGGAAGAGCTTCTCGCACTCTGAATACCATGATGTTAAGAGCCCT
GCGGGAGAAGGTGGTCTTGTATGGAGTGGGTGTCTGCTTTGTGGTGGCCG
TGGGCGTCAGTCTCTATCTGACCTTCGCACCCAGTTCAAGCAGCACCGCC
TCGTCGGCAAGCTTTCTAGACCAT
BO08544.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:36:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vti1-RA | 693 | CG3279-PA | 1..690 | 17..706 | 3450 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:36:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vti1-RA | 1370 | CG3279-RA | 142..831 | 17..706 | 3450 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:36:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 692025..692620 | 706..111 | 2980 | 100 | Minus |
3L | 28110227 | 3L | 692670..692778 | 125..17 | 485 | 96.3 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:36:19 has no hits.
BO08544.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:00:36 Download gff for
BO08544.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3279-RA | 1..693 | 17..707 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:32:42 Download gff for
BO08544.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3279-RA | 133..827 | 9..706 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:24:05 Download gff for
BO08544.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vti1-RA | 142..831 | 17..708 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:00:36 Download gff for
BO08544.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3279-RA | 133..827 | 9..706 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:01:29 Download gff for
BO08544.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vti1-RA | 142..831 | 17..708 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:01:29 Download gff for
BO08544.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 692023..692620 | 111..708 | 99 | <- | Minus |
3L | 692685..692778 | 17..110 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:24:05 Download gff for
BO08544.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 692023..692620 | 111..708 | 99 | <- | Minus |
arm_3L | 692685..692778 | 17..110 | 100 | | Minus |
BO08544.pep Sequence
Translation from 16 to 724
> BO08544.pep
MSLLEQYEQQYATLIAEITAHIGRLQQQNNNSERHDLCSKIDSSLPEAQE
LLEQMGLEVRELNPGLRSSFNGKLQVAQAELKRLQAEYRLTKDKQRSQAN
TFTTLDLGDSYEDVSISTDQRQRLLDNSERIERTGNRLTEGYRVALETEQ
LGAQVLNDLHHQRETLQGARARLRETNAELGRASRTLNTMMLRALREKVV
LYGVGVCFVVAVGVSLYLTFAPSSSSTASSASFLDH
BO08544.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:40:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vti1-PA | 230 | CG3279-PA | 1..230 | 1..230 | 1137 | 100 | Plus |