Clone Sequence Records
BO08547.3prime Sequence
935 bp (850 high quality bases) assembled on 2006-01-06
> BO08547.3prime
ATGGTCTAGAAAGCTTGCGCGCACCACATTCAGCGGAATGGATGCGTTCT
TGCTGCTGACGATACGTCCCAGCATCTCGTCAAGTGGCGCACCCAGTTCC
TGCCAAATGCACTTGCCGATCAGCGAGATTTCCTCCAGTGGCGGTCGGAA
AGCCACCAGCAGATTAAGGCATATTCCATCAGTGTTCTCCTGCTCCGAAG
CTGAGTGCTCCACGCTAAGTAAGCCATGTGGTCGATGCTGTGGCAGCTCC
GCACCAAAAATCTCAATCATGAACTTGCGCAGCGTAGAGTGCAGGCTGCG
ATTCGGATGCAGTTCGACCGTGGGAAAGTGGTGGGCGTTCTTTTCACTGA
CCAGGATGTTCAGCGAGTTGTGTGCTCGCTTTCTGGCTACAGCCAGAACC
CGCAGATAGTTACGTTTGTGGGCGAAACGTGTGGGCAGTATGGTCCCATG
CCAGGGTGAAGGGCTAATGGCAATCTTTTGCCCCTGATGATACGCCCTTC
CAATCTCAATGATACTGAGTATGTCGTTGGCTCGGAGAGGTACTTCCTTG
GGATTACGCACCCATCTCGCCTGAATCGATTCGGCGTCTGCATCCGCAGG
AGTTTTAAGTCGGCCGCCTGTGATGCGTCCAGTGAGCACGAAGCGGAACC
AAGAGCCACCGGCGGCCTCCACCGCTAATAGAGTGGTCAGCTCGGCATTT
AGACCAGTCTCTTCGAAAACTTCCCGGGCGGCTGCCTCCGTGATGGATTC
GCCCCTTTCCATGCGACCAGCGGGTAAGTACCACTTGCCGGCACAGCTCT
GTTTGGCCTCCTCGATCATCAGAAGCTCGTCGTGCTCATTGATCAACACA
CAGGCCACAATATAGGTGACTGTCTGTCCAAGAATGGGCACAAATCGGAT
GCGGATGAGGGCTGTACTCCCTGGGCCTCGGCGGG
BO08547.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:26:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10898-PA | 1023 | CG10898-RA | 145..1020 | 894..19 | 4380 | 100 | Minus |
CG10898-PA | 1023 | CG10898-RA | 104..146 | 934..892 | 215 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:49:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10898-RA | 1969 | CG10898-RA | 702..1618 | 934..19 | 4560 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:49:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11558756..11559526 | 789..19 | 3855 | 100 | Minus |
3R | 32079331 | 3R | 11558538..11558685 | 934..788 | 690 | 99.3 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:49:02 has no hits.
BO08547.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:50:08 Download gff for
BO08547.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10898-PA | 102..1023 | 15..935 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:46:02 Download gff for
BO08547.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10898-PA | 102..1023 | 15..935 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:56:54 Download gff for
BO08547.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10898-RA | 747..1668 | 15..935 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:10:09 Download gff for
BO08547.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10898-RA | 700..1621 | 15..935 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:10:09 Download gff for
BO08547.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11558536..11558684 | 789..935 | 98 | -> | Minus |
3R | 11558757..11559529 | 15..788 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:56:54 Download gff for
BO08547.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7384258..7384406 | 789..935 | 98 | -> | Minus |
arm_3R | 7384479..7385251 | 15..788 | 99 | | Minus |
BO08547.5prime Sequence
866 bp (857 high quality bases) assembled on 2006-01-06
> BO08547.5prime
GAAGTTATCAGTCGACATGGCTTCGATTGTGGAGAAAGTGCGTCGCATTT
TGGACTCAAAAGATCTGGGCGACATCACAACGGAACTGTGTGACTTTTCT
CTTAAGGAACAGAATGCCACCGCCGAGGCCCAGGGAGTACAGCCCTCATC
CGCATCCGATTTTGTGCCCATTCTTGGACAGACAGTCACCTATATTGTGG
CCTGTGTGTTGATCAATGAGCACGACGAGCTTCTGATGATCGAGGAGGCC
AAACAGAGCTGTGCCGGCAAGTGGTACTTACCCGCTGGTCGCATGGAAAG
GGGCGAATCCATCACGGAGGCAGCCGCCCGGGAAGTTTTCGAAGAGACTG
GTCTAAATGCCGAGCTGACCACTCTATTAGCGGTGGAGGCCGCCGGTGGC
TCTTGGTTCCGCTTCGTGCTCACTGGACGCATCACAGGCGGCCGACTTAA
AACTCCTGCGGATGCAGACGCCGAATCGATTCAGGCGAGATGGGTGCGTA
ATCCCAAGGAAGTACCTCTCCGAGCCAACGACATACTCAGTATCATTGAG
ATTGGAAGGGCGTATCATCAGGGGCAAAAGATTGCCATTAGCCCTTCACC
CTGGCATGGGACCATACTGCCCACACGTTTCGCCCACAAACGTAACTATC
TGCGGGTTCTGGCTGTAGCCAGAAAGCGAGCACACAACTCGCTGAACATC
CTGGTCAGTGAAAAGAACGCCCACCACTTTCCCACGGTCGAACTGCATCC
GAATCGCAGCCTGCACTCTACGCTGCGCAAGTTCATGATTGAGATTTTTG
GTGCGGAGCTGCCACAGCATCGACCACATGGCTTACTTAGCGTGGAGCAC
TCAGCTTCGGAGCAGG
BO08547.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:26:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10898-PA | 1023 | CG10898-RA | 1..850 | 17..866 | 4250 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:47:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10898-RA | 1969 | CG10898-RA | 599..1448 | 17..866 | 4250 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:47:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11558756..11559356 | 266..866 | 3005 | 100 | Plus |
3R | 32079331 | 3R | 11558435..11558685 | 17..267 | 1255 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:47:06 has no hits.
BO08547.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:50:09 Download gff for
BO08547.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10898-PA | 1..850 | 17..866 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:46:03 Download gff for
BO08547.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10898-PA | 1..850 | 17..866 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:16:19 Download gff for
BO08547.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10898-RA | 642..1495 | 9..866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:45:47 Download gff for
BO08547.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10898-RA | 595..1448 | 9..866 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:45:47 Download gff for
BO08547.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11558431..11558684 | 9..266 | 98 | -> | Plus |
3R | 11558757..11559356 | 267..866 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:16:19 Download gff for
BO08547.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7384153..7384406 | 9..266 | 98 | -> | Plus |
arm_3R | 7384479..7385078 | 267..866 | 100 | | Plus |
BO08547.complete Sequence
1054 bp (1054 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631234
> BO08547.complete
GAAGTTATCAGTCGACATGGCTTCGATTGTGGAGAAAGTGCGTCGCATTT
TGGACTCAAAAGATCTGGGCGACATCACAACGGAACTGTGTGACTTTTCT
CTTAAGGAACAGAATGCCACCGCCGAGGCCCAGGGAGTACAGCCCTCATC
CGCATCCGATTTTGTGCCCATTCTTGGACAGACAGTCACCTATATTGTGG
CCTGTGTGTTGATCAATGAGCACGACGAGCTTCTGATGATCGAGGAGGCC
AAACAGAGCTGTGCCGGCAAGTGGTACTTACCCGCTGGTCGCATGGAAAG
GGGCGAATCCATCACGGAGGCAGCCGCCCGGGAAGTTTTCGAAGAGACTG
GTCTAAATGCCGAGCTGACCACTCTATTAGCGGTGGAGGCCGCCGGTGGC
TCTTGGTTCCGCTTCGTGCTCACTGGACGCATCACAGGCGGCCGACTTAA
AACTCCTGCGGATGCAGACGCCGAATCGATTCAGGCGAGATGGGTGCGTA
ATCCCAAGGAAGTACCTCTCCGAGCCAACGACATACTCAGTATCATTGAG
ATTGGAAGGGCGTATCATCAGGGGCAAAAGATTGCCATTAGCCCTTCACC
CTGGCATGGGACCATACTGCCCACACGTTTCGCCCACAAACGTAACTATC
TGCGGGTTCTGGCTGTAGCCAGAAAGCGAGCACACAACTCGCTGAACATC
CTGGTCAGTGAAAAGAACGCCCACCACTTTCCCACGGTCGAACTGCATCC
GAATCGCAGCCTGCACTCTACGCTGCGCAAGTTCATGATTGAGATTTTTG
GTGCGGAGCTGCCACAGCATCGACCACATGGCTTACTTAGCGTGGAGCAC
TCAGCTTCGGAGCAGGAGAACACTGATGGAATATGCCTTAATCTGCTGGT
GGCTTTCCGACCGCCACTGGAGGAAATCTCGCTGATCGGCAAGTGCATTT
GGCAGGAACTGGGTGCGCCACTTGACGAGATGCTGGGACGTATCGTCAGC
AGCAAGAACGCATCCATTCCGCTGAATGTGGTGCGCGCAAGCTTTCTAGA
CCAT
BO08547.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:59:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10898-RA | 1023 | CG10898-PA | 1..1020 | 17..1036 | 5100 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:59:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10898-RA | 1969 | CG10898-RA | 599..1618 | 17..1036 | 5100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:59:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11558756..11559526 | 266..1036 | 3855 | 100 | Plus |
3R | 32079331 | 3R | 11558435..11558685 | 17..267 | 1255 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:59:04 has no hits.
BO08547.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:11:32 Download gff for
BO08547.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10898-RA | 1..1023 | 17..1040 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:32:22 Download gff for
BO08547.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10898-RA | 642..1668 | 9..1040 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:40:57 Download gff for
BO08547.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10898-RA | 646..1665 | 17..1038 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:11:32 Download gff for
BO08547.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10898-RA | 642..1668 | 9..1040 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:15:29 Download gff for
BO08547.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10898-RA | 599..1618 | 17..1038 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:15:29 Download gff for
BO08547.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11558435..11558684 | 17..266 | 100 | -> | Plus |
3R | 11558757..11559526 | 267..1038 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:40:57 Download gff for
BO08547.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7384157..7384406 | 17..266 | 100 | -> | Plus |
arm_3R | 7384479..7385248 | 267..1038 | 99 | | Plus |
BO08547.pep Sequence
Translation from 16 to 1054
> BO08547.pep
MASIVEKVRRILDSKDLGDITTELCDFSLKEQNATAEAQGVQPSSASDFV
PILGQTVTYIVACVLINEHDELLMIEEAKQSCAGKWYLPAGRMERGESIT
EAAAREVFEETGLNAELTTLLAVEAAGGSWFRFVLTGRITGGRLKTPADA
DAESIQARWVRNPKEVPLRANDILSIIEIGRAYHQGQKIAISPSPWHGTI
LPTRFAHKRNYLRVLAVARKRAHNSLNILVSEKNAHHFPTVELHPNRSLH
STLRKFMIEIFGAELPQHRPHGLLSVEHSASEQENTDGICLNLLVAFRPP
LEEISLIGKCIWQELGAPLDEMLGRIVSSKNASIPLNVVRASFLDH
BO08547.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:14:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10898-PA | 340 | CG10898-PA | 1..340 | 1..340 | 1743 | 100 | Plus |