Clone BO08547 Report

Search the DGRC for BO08547

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:85
Well:47
Vector:pDNR-Dual
Associated Gene/TranscriptCG10898-RA
Protein status:BO08547.pep: validated full length
Sequenced Size:1054

Clone Sequence Records

BO08547.3prime Sequence

935 bp (850 high quality bases) assembled on 2006-01-06

> BO08547.3prime
ATGGTCTAGAAAGCTTGCGCGCACCACATTCAGCGGAATGGATGCGTTCT
TGCTGCTGACGATACGTCCCAGCATCTCGTCAAGTGGCGCACCCAGTTCC
TGCCAAATGCACTTGCCGATCAGCGAGATTTCCTCCAGTGGCGGTCGGAA
AGCCACCAGCAGATTAAGGCATATTCCATCAGTGTTCTCCTGCTCCGAAG
CTGAGTGCTCCACGCTAAGTAAGCCATGTGGTCGATGCTGTGGCAGCTCC
GCACCAAAAATCTCAATCATGAACTTGCGCAGCGTAGAGTGCAGGCTGCG
ATTCGGATGCAGTTCGACCGTGGGAAAGTGGTGGGCGTTCTTTTCACTGA
CCAGGATGTTCAGCGAGTTGTGTGCTCGCTTTCTGGCTACAGCCAGAACC
CGCAGATAGTTACGTTTGTGGGCGAAACGTGTGGGCAGTATGGTCCCATG
CCAGGGTGAAGGGCTAATGGCAATCTTTTGCCCCTGATGATACGCCCTTC
CAATCTCAATGATACTGAGTATGTCGTTGGCTCGGAGAGGTACTTCCTTG
GGATTACGCACCCATCTCGCCTGAATCGATTCGGCGTCTGCATCCGCAGG
AGTTTTAAGTCGGCCGCCTGTGATGCGTCCAGTGAGCACGAAGCGGAACC
AAGAGCCACCGGCGGCCTCCACCGCTAATAGAGTGGTCAGCTCGGCATTT
AGACCAGTCTCTTCGAAAACTTCCCGGGCGGCTGCCTCCGTGATGGATTC
GCCCCTTTCCATGCGACCAGCGGGTAAGTACCACTTGCCGGCACAGCTCT
GTTTGGCCTCCTCGATCATCAGAAGCTCGTCGTGCTCATTGATCAACACA
CAGGCCACAATATAGGTGACTGTCTGTCCAAGAATGGGCACAAATCGGAT
GCGGATGAGGGCTGTACTCCCTGGGCCTCGGCGGG

BO08547.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:26:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG10898-PA 1023 CG10898-RA 145..1020 894..19 4380 100 Minus
CG10898-PA 1023 CG10898-RA 104..146 934..892 215 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:49:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG10898-RA 1969 CG10898-RA 702..1618 934..19 4560 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:49:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11558756..11559526 789..19 3855 100 Minus
3R 32079331 3R 11558538..11558685 934..788 690 99.3 Minus
Blast to na_te.dros performed on 2015-02-11 09:49:02 has no hits.

BO08547.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:50:08 Download gff for BO08547.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10898-PA 102..1023 15..935 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:46:02 Download gff for BO08547.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10898-PA 102..1023 15..935 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:56:54 Download gff for BO08547.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10898-RA 747..1668 15..935 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:10:09 Download gff for BO08547.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10898-RA 700..1621 15..935 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:10:09 Download gff for BO08547.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 11558536..11558684 789..935 98 -> Minus
3R 11558757..11559529 15..788 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:56:54 Download gff for BO08547.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7384258..7384406 789..935 98 -> Minus
arm_3R 7384479..7385251 15..788 99   Minus

BO08547.5prime Sequence

866 bp (857 high quality bases) assembled on 2006-01-06

> BO08547.5prime
GAAGTTATCAGTCGACATGGCTTCGATTGTGGAGAAAGTGCGTCGCATTT
TGGACTCAAAAGATCTGGGCGACATCACAACGGAACTGTGTGACTTTTCT
CTTAAGGAACAGAATGCCACCGCCGAGGCCCAGGGAGTACAGCCCTCATC
CGCATCCGATTTTGTGCCCATTCTTGGACAGACAGTCACCTATATTGTGG
CCTGTGTGTTGATCAATGAGCACGACGAGCTTCTGATGATCGAGGAGGCC
AAACAGAGCTGTGCCGGCAAGTGGTACTTACCCGCTGGTCGCATGGAAAG
GGGCGAATCCATCACGGAGGCAGCCGCCCGGGAAGTTTTCGAAGAGACTG
GTCTAAATGCCGAGCTGACCACTCTATTAGCGGTGGAGGCCGCCGGTGGC
TCTTGGTTCCGCTTCGTGCTCACTGGACGCATCACAGGCGGCCGACTTAA
AACTCCTGCGGATGCAGACGCCGAATCGATTCAGGCGAGATGGGTGCGTA
ATCCCAAGGAAGTACCTCTCCGAGCCAACGACATACTCAGTATCATTGAG
ATTGGAAGGGCGTATCATCAGGGGCAAAAGATTGCCATTAGCCCTTCACC
CTGGCATGGGACCATACTGCCCACACGTTTCGCCCACAAACGTAACTATC
TGCGGGTTCTGGCTGTAGCCAGAAAGCGAGCACACAACTCGCTGAACATC
CTGGTCAGTGAAAAGAACGCCCACCACTTTCCCACGGTCGAACTGCATCC
GAATCGCAGCCTGCACTCTACGCTGCGCAAGTTCATGATTGAGATTTTTG
GTGCGGAGCTGCCACAGCATCGACCACATGGCTTACTTAGCGTGGAGCAC
TCAGCTTCGGAGCAGG

BO08547.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:26:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG10898-PA 1023 CG10898-RA 1..850 17..866 4250 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:47:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG10898-RA 1969 CG10898-RA 599..1448 17..866 4250 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:47:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11558756..11559356 266..866 3005 100 Plus
3R 32079331 3R 11558435..11558685 17..267 1255 100 Plus
Blast to na_te.dros performed on 2015-02-12 05:47:06 has no hits.

BO08547.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:50:09 Download gff for BO08547.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10898-PA 1..850 17..866 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:46:03 Download gff for BO08547.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10898-PA 1..850 17..866 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:16:19 Download gff for BO08547.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10898-RA 642..1495 9..866 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:45:47 Download gff for BO08547.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10898-RA 595..1448 9..866 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:45:47 Download gff for BO08547.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 11558431..11558684 9..266 98 -> Plus
3R 11558757..11559356 267..866 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:16:19 Download gff for BO08547.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7384153..7384406 9..266 98 -> Plus
arm_3R 7384479..7385078 267..866 100   Plus

BO08547.complete Sequence

1054 bp (1054 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ631234

> BO08547.complete
GAAGTTATCAGTCGACATGGCTTCGATTGTGGAGAAAGTGCGTCGCATTT
TGGACTCAAAAGATCTGGGCGACATCACAACGGAACTGTGTGACTTTTCT
CTTAAGGAACAGAATGCCACCGCCGAGGCCCAGGGAGTACAGCCCTCATC
CGCATCCGATTTTGTGCCCATTCTTGGACAGACAGTCACCTATATTGTGG
CCTGTGTGTTGATCAATGAGCACGACGAGCTTCTGATGATCGAGGAGGCC
AAACAGAGCTGTGCCGGCAAGTGGTACTTACCCGCTGGTCGCATGGAAAG
GGGCGAATCCATCACGGAGGCAGCCGCCCGGGAAGTTTTCGAAGAGACTG
GTCTAAATGCCGAGCTGACCACTCTATTAGCGGTGGAGGCCGCCGGTGGC
TCTTGGTTCCGCTTCGTGCTCACTGGACGCATCACAGGCGGCCGACTTAA
AACTCCTGCGGATGCAGACGCCGAATCGATTCAGGCGAGATGGGTGCGTA
ATCCCAAGGAAGTACCTCTCCGAGCCAACGACATACTCAGTATCATTGAG
ATTGGAAGGGCGTATCATCAGGGGCAAAAGATTGCCATTAGCCCTTCACC
CTGGCATGGGACCATACTGCCCACACGTTTCGCCCACAAACGTAACTATC
TGCGGGTTCTGGCTGTAGCCAGAAAGCGAGCACACAACTCGCTGAACATC
CTGGTCAGTGAAAAGAACGCCCACCACTTTCCCACGGTCGAACTGCATCC
GAATCGCAGCCTGCACTCTACGCTGCGCAAGTTCATGATTGAGATTTTTG
GTGCGGAGCTGCCACAGCATCGACCACATGGCTTACTTAGCGTGGAGCAC
TCAGCTTCGGAGCAGGAGAACACTGATGGAATATGCCTTAATCTGCTGGT
GGCTTTCCGACCGCCACTGGAGGAAATCTCGCTGATCGGCAAGTGCATTT
GGCAGGAACTGGGTGCGCCACTTGACGAGATGCTGGGACGTATCGTCAGC
AGCAAGAACGCATCCATTCCGCTGAATGTGGTGCGCGCAAGCTTTCTAGA
CCAT

BO08547.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:59:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG10898-RA 1023 CG10898-PA 1..1020 17..1036 5100 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:59:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG10898-RA 1969 CG10898-RA 599..1618 17..1036 5100 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:59:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11558756..11559526 266..1036 3855 100 Plus
3R 32079331 3R 11558435..11558685 17..267 1255 100 Plus
Blast to na_te.dros performed on 2014-11-27 00:59:04 has no hits.

BO08547.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:11:32 Download gff for BO08547.complete
Subject Subject Range Query Range Percent Splice Strand
CG10898-RA 1..1023 17..1040 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:32:22 Download gff for BO08547.complete
Subject Subject Range Query Range Percent Splice Strand
CG10898-RA 642..1668 9..1040 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:40:57 Download gff for BO08547.complete
Subject Subject Range Query Range Percent Splice Strand
CG10898-RA 646..1665 17..1038 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:11:32 Download gff for BO08547.complete
Subject Subject Range Query Range Percent Splice Strand
CG10898-RA 642..1668 9..1040 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:15:29 Download gff for BO08547.complete
Subject Subject Range Query Range Percent Splice Strand
CG10898-RA 599..1618 17..1038 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:15:29 Download gff for BO08547.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11558435..11558684 17..266 100 -> Plus
3R 11558757..11559526 267..1038 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:40:57 Download gff for BO08547.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7384157..7384406 17..266 100 -> Plus
arm_3R 7384479..7385248 267..1038 99   Plus

BO08547.pep Sequence

Translation from 16 to 1054

> BO08547.pep
MASIVEKVRRILDSKDLGDITTELCDFSLKEQNATAEAQGVQPSSASDFV
PILGQTVTYIVACVLINEHDELLMIEEAKQSCAGKWYLPAGRMERGESIT
EAAAREVFEETGLNAELTTLLAVEAAGGSWFRFVLTGRITGGRLKTPADA
DAESIQARWVRNPKEVPLRANDILSIIEIGRAYHQGQKIAISPSPWHGTI
LPTRFAHKRNYLRVLAVARKRAHNSLNILVSEKNAHHFPTVELHPNRSLH
STLRKFMIEIFGAELPQHRPHGLLSVEHSASEQENTDGICLNLLVAFRPP
LEEISLIGKCIWQELGAPLDEMLGRIVSSKNASIPLNVVRASFLDH

BO08547.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:14:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG10898-PA 340 CG10898-PA 1..340 1..340 1743 100 Plus