Clone Sequence Records
BO08549.3prime Sequence
880 bp (788 high quality bases) assembled on 2006-01-06
> BO08549.3prime
ATGGTCTAGAAAGCTTGCCACCTCCTCCTTCAGCACATGCTTCTTTTTCT
CGCTGACGTAGGGCACCTTCTTGCTCTTCTTGGTGTGCTTGCGCACATTG
GCCTCCTTGACCTGCTCCTTCTCCTTGACCGTGCGCATCTTCTTCTGTGC
ATTGAGCACGTGACGCGGCACCTGGCGATGGCGCGCGATGCGCTTGATCT
GCGGATGAGCGGCATACTTTTGCTTCAGCGCCTCCTGGTAATTGAAATTG
ACGCGCTCACGTGGACGGATGACGCCCAGCTTTTCGGAGGCATTCGCCTT
CCACATGCGGACGTTCATTTCGTCGGAGCCGGAGAAAACGTATCGATTAT
CGAGGGACCAGGCCACGCAGACCACATGCTGCATGCGTTTTGTGTGGTAA
ATATCCCGCGAGTGACTGTGGTGGGCATTGTAGATCCGAATGGTCTTGTC
GTAGCTGGCCGAGACGAATTCCTTGCCAGTGGGCGAGTAGTCAACATCGG
TGACAGCGGAAACATGGTCAAAGTGAACCTTCAGCGGCGTTTGCAGCTTG
CGAGTGTCAAAGGTATAAAGGTTGCAATCCTCGTTGGCCACTGTGAAGTT
GAACGCCTCCATGGGATTCCACGCGAGCTTGTTGCTCTTCATGGTTAGGA
CGACCTTCCTTAGTGGCTGCGCCTCTCTCTGATCGTACAGGATAATGCTG
CGATCGCTGGCACAGCACGCCAGGATGCTTGTTTCCACGGGGTTATAGGA
TATGGTGTGAAGGGTATCGACGCCCCACTTCAATGTCTTCAAAGGATCGT
TGTGCCTTTCGTCCCAAATGGCGCATACCTCGCCACAGGTGGCGAACTTG
TTATCCCTGCGATTGTGCGAGATGCCGTGC
BO08549.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:26:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7275-PA | 1341 | CG7275-RA | 477..1338 | 880..19 | 4310 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7275-RA | 1495 | CG7275-RA | 578..1439 | 880..19 | 4310 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:39:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15499953..15500505 | 571..19 | 2765 | 100 | Minus |
3L | 28110227 | 3L | 15499588..15499896 | 880..572 | 1545 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:39:16 has no hits.
BO08549.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:50:12 Download gff for
BO08549.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7275-PA | 477..1341 | 16..880 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:46:08 Download gff for
BO08549.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7275-PA | 477..1341 | 16..880 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:05:11 Download gff for
BO08549.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7275-RA | 578..1439 | 19..880 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:03:43 Download gff for
BO08549.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7275-RA | 578..1439 | 19..880 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:03:43 Download gff for
BO08549.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15499588..15499896 | 572..880 | 100 | -> | Minus |
3L | 15499953..15500505 | 19..571 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:05:11 Download gff for
BO08549.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15492688..15492996 | 572..880 | 100 | -> | Minus |
arm_3L | 15493053..15493605 | 19..571 | 100 | | Minus |
BO08549.5prime Sequence
839 bp (838 high quality bases) assembled on 2006-01-06
> BO08549.5prime
GAAGTTATCAGTCGACATGAAGGTGAAAATGATTAGTCGCAATCCGGATA
ACTATGTCCGAGAAACCAAACTGCAACAGCACAAAATGCCCAGGAACTAC
GATCCTTCGCTGCATCCTTTGGAGGGTCCCAGGGAATACGTGCGTGCCCT
GAATGCCACCAAGTTGGATCGAGTATTTGCCAAACCCTTCGTCTGCAATT
TGAGCGGGCATCGCGATGGAGTCTCCTGCTTCGGAAAGCATCCCAAGCAA
CTTTCCACCTTGGCCACCGGCGCCTATGACGGCGAAGTGCGCATTTGGGA
CTTGGCGAATCGTATCAGCTCTCGGAACTTTGTGGCCCACGACGGTTTCG
TTCGCGGCATTGCTTACACCCAGAACGGAGGTCGCATTTTCACCGTGGGA
GATGATAAAACCATCAAGGTTTGGAAAGCAGAGGCTCCGGAAGTCGGCGA
GGATGAGGTGCCGGTGAACACTATACTGAGTAAATTTGGACTGCACGGCA
TCTCGCACAATCGCAGGGATAACAAGTTCGCCACCTGTGGCGAGGTATGC
GCCATTTGGGACGAAAGGCACAACGATCCTTTGAAGACATTGAAGTGGGG
CGTCGATACCCTTCACACCATATCCTATAACCCCGTGGAAACAAGCATCC
TGGCGTGCTGTGCCAGCGATCGCAGCATTATCCTGTACGATCAGAGAGAG
GCGCAGCCACTAAGGAAGGTCGTCCTAACCATGAAGAGCAACAAGCTCGC
GTGGAATCCCATGGAGGCGTTCAACTTCACAGTGGCCAACGAGGATTGCA
ACCTTTATACCTTTGACACTCGCAAGCTGCAAACGCCGC
BO08549.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:26:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7275-PA | 1341 | CG7275-RA | 1..823 | 17..839 | 4115 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:09:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7275-RA | 1495 | CG7275-RA | 102..924 | 17..839 | 4115 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:09:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15499182..15499896 | 87..801 | 3575 | 100 | Plus |
3L | 28110227 | 3L | 15499060..15499129 | 17..86 | 350 | 100 | Plus |
3L | 28110227 | 3L | 15499953..15499990 | 802..839 | 190 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 12:09:28 has no hits.
BO08549.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:50:13 Download gff for
BO08549.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7275-PA | 1..823 | 17..839 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:46:09 Download gff for
BO08549.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7275-PA | 1..823 | 17..839 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:57:22 Download gff for
BO08549.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7275-RA | 96..924 | 7..839 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:54:55 Download gff for
BO08549.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7275-RA | 96..924 | 7..839 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:54:55 Download gff for
BO08549.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15499054..15499129 | 7..86 | 95 | -> | Plus |
3L | 15499182..15499896 | 87..801 | 100 | -> | Plus |
3L | 15499953..15499990 | 802..839 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:57:22 Download gff for
BO08549.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15492154..15492229 | 7..86 | 95 | -> | Plus |
arm_3L | 15492282..15492996 | 87..801 | 100 | -> | Plus |
arm_3L | 15493053..15493090 | 802..839 | 100 | | Plus |
BO08549.complete Sequence
1372 bp (1372 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631235
> BO08549.complete
GAAGTTATCAGTCGACATGAAGGTGAAAATGATTAGTCGCAATCCGGATA
ACTATGTCCGAGAAACCAAACTGCAACAGCACAAAATGCCCAGGAACTAC
GATCCTTCGCTGCATCCTTTGGAGGGTCCCAGGGAATACGTGCGTGCCCT
GAATGCCACCAAGTTGGATCGAGTATTTGCCAAACCCTTCGTCTGCAATT
TGAGCGGGCATCGCGATGGAGTCTCCTGCTTCGGAAAGCATCCCAAGCAA
CTTTCCACCTTGGCCACCGGCGCCTATGACGGCGAAGTGCGCATTTGGGA
CTTGGCGAATCGTATCAGCTCTCGGAACTTTGTGGCCCACGACGGTTTCG
TTCGCGGCATTGCTTACACCCAGAACGGAGGTCGCATTTTCACCGTGGGA
GATGATAAAACCATCAAGGTTTGGAAAGCAGAGGCTCCGGAAGTCGGCGA
GGATGAGGTGCCGGTGAACACTATACTGAGTAAATTTGGACTGCACGGCA
TCTCGCACAATCGCAGGGATAACAAGTTCGCCACCTGTGGCGAGGTATGC
GCCATTTGGGACGAAAGGCACAACGATCCTTTGAAGACATTGAAGTGGGG
CGTCGATACCCTTCACACCATATCCTATAACCCCGTGGAAACAAGCATCC
TGGCGTGCTGTGCCAGCGATCGCAGCATTATCCTGTACGATCAGAGAGAG
GCGCAGCCACTAAGGAAGGTCGTCCTAACCATGAAGAGCAACAAGCTCGC
GTGGAATCCCATGGAGGCGTTCAACTTCACAGTGGCCAACGAGGATTGCA
ACCTTTATACCTTTGACACTCGCAAGCTGCAAACGCCGCTGAAGGTTCAC
TTTGACCATGTTTCCGCTGTCACCGATGTTGACTACTCGCCCACTGGCAA
GGAATTCGTCTCGGCCAGCTACGACAAGACCATTCGGATCTACAATGCCC
ACCACAGTCACTCGCGGGATATTTACCACACAAAACGCATGCAGCATGTG
GTCTGCGTGGCCTGGTCCCTCGATAATCGATACGTTTTCTCCGGCTCCGA
CGAAATGAACGTCCGCATGTGGAAGGCGAATGCCTCCGAAAAGCTGGGCG
TCATCCGTCCACGTGAGCGCGTCAATTTCAATTACCAGGAGGCGCTGAAG
CAAAAGTATGCCGCTCATCCGCAGATCAAGCGCATCGCGCGCCATCGCCA
GGTGCCGCGTCACGTGCTCAATGCACAGAAGAAGATGCGCACGGTCAAGG
AGAAGGAGCAGGTCAAGGAGGCCAATGTGCGCAAGCACACCAAGAAGAGC
AAGAAGGTGCCCTACGTCAGCGAGAAAAAGAAGCATGTGCTGAAGGAGGA
GGTGGCAAGCTTTCTAGACCAT
BO08549.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:25:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7275-RA | 1341 | CG7275-PA | 1..1338 | 17..1354 | 6690 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:25:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7275-RA | 1495 | CG7275-RA | 102..1439 | 17..1354 | 6690 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:25:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15499182..15499896 | 87..801 | 3575 | 100 | Plus |
3L | 28110227 | 3L | 15499953..15500505 | 802..1354 | 2765 | 100 | Plus |
3L | 28110227 | 3L | 15499060..15499129 | 17..86 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:25:29 has no hits.
BO08549.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:11:34 Download gff for
BO08549.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7275-RA | 1..1341 | 17..1357 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:32:23 Download gff for
BO08549.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7275-RA | 91..1434 | 7..1354 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:50:40 Download gff for
BO08549.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7275-RA | 102..1439 | 17..1356 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:11:36 Download gff for
BO08549.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7275-RA | 91..1434 | 7..1354 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:18:10 Download gff for
BO08549.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7275-RA | 102..1439 | 17..1356 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:18:10 Download gff for
BO08549.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15499060..15499129 | 17..86 | 100 | -> | Plus |
3L | 15499182..15499896 | 87..801 | 100 | -> | Plus |
3L | 15499953..15500505 | 802..1356 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:50:40 Download gff for
BO08549.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15492160..15492229 | 17..86 | 100 | -> | Plus |
arm_3L | 15492282..15492996 | 87..801 | 100 | -> | Plus |
arm_3L | 15493053..15493605 | 802..1356 | 99 | | Plus |
BO08549.pep Sequence
Translation from 16 to 1372
> BO08549.pep
MKVKMISRNPDNYVRETKLQQHKMPRNYDPSLHPLEGPREYVRALNATKL
DRVFAKPFVCNLSGHRDGVSCFGKHPKQLSTLATGAYDGEVRIWDLANRI
SSRNFVAHDGFVRGIAYTQNGGRIFTVGDDKTIKVWKAEAPEVGEDEVPV
NTILSKFGLHGISHNRRDNKFATCGEVCAIWDERHNDPLKTLKWGVDTLH
TISYNPVETSILACCASDRSIILYDQREAQPLRKVVLTMKSNKLAWNPME
AFNFTVANEDCNLYTFDTRKLQTPLKVHFDHVSAVTDVDYSPTGKEFVSA
SYDKTIRIYNAHHSHSRDIYHTKRMQHVVCVAWSLDNRYVFSGSDEMNVR
MWKANASEKLGVIRPRERVNFNYQEALKQKYAAHPQIKRIARHRQVPRHV
LNAQKKMRTVKEKEQVKEANVRKHTKKSKKVPYVSEKKKHVLKEEVASFL
DH
BO08549.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:14:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7275-PA | 446 | CG7275-PA | 1..446 | 1..446 | 2379 | 100 | Plus |
Poc1-PA | 391 | CG10191-PA | 13..300 | 61..355 | 203 | 24.4 | Plus |
Poc1-PB | 403 | CG10191-PB | 13..300 | 61..355 | 203 | 24.4 | Plus |
CG3436-PC | 347 | CG3436-PC | 91..340 | 59..306 | 167 | 26.3 | Plus |
CG3436-PA | 347 | CG3436-PA | 91..340 | 59..306 | 167 | 26.3 | Plus |