Clone BO08549 Report

Search the DGRC for BO08549

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:85
Well:49
Vector:pDNR-Dual
Associated Gene/TranscriptCG7275-RA
Protein status:BO08549.pep: validated full length
Sequenced Size:1372

Clone Sequence Records

BO08549.3prime Sequence

880 bp (788 high quality bases) assembled on 2006-01-06

> BO08549.3prime
ATGGTCTAGAAAGCTTGCCACCTCCTCCTTCAGCACATGCTTCTTTTTCT
CGCTGACGTAGGGCACCTTCTTGCTCTTCTTGGTGTGCTTGCGCACATTG
GCCTCCTTGACCTGCTCCTTCTCCTTGACCGTGCGCATCTTCTTCTGTGC
ATTGAGCACGTGACGCGGCACCTGGCGATGGCGCGCGATGCGCTTGATCT
GCGGATGAGCGGCATACTTTTGCTTCAGCGCCTCCTGGTAATTGAAATTG
ACGCGCTCACGTGGACGGATGACGCCCAGCTTTTCGGAGGCATTCGCCTT
CCACATGCGGACGTTCATTTCGTCGGAGCCGGAGAAAACGTATCGATTAT
CGAGGGACCAGGCCACGCAGACCACATGCTGCATGCGTTTTGTGTGGTAA
ATATCCCGCGAGTGACTGTGGTGGGCATTGTAGATCCGAATGGTCTTGTC
GTAGCTGGCCGAGACGAATTCCTTGCCAGTGGGCGAGTAGTCAACATCGG
TGACAGCGGAAACATGGTCAAAGTGAACCTTCAGCGGCGTTTGCAGCTTG
CGAGTGTCAAAGGTATAAAGGTTGCAATCCTCGTTGGCCACTGTGAAGTT
GAACGCCTCCATGGGATTCCACGCGAGCTTGTTGCTCTTCATGGTTAGGA
CGACCTTCCTTAGTGGCTGCGCCTCTCTCTGATCGTACAGGATAATGCTG
CGATCGCTGGCACAGCACGCCAGGATGCTTGTTTCCACGGGGTTATAGGA
TATGGTGTGAAGGGTATCGACGCCCCACTTCAATGTCTTCAAAGGATCGT
TGTGCCTTTCGTCCCAAATGGCGCATACCTCGCCACAGGTGGCGAACTTG
TTATCCCTGCGATTGTGCGAGATGCCGTGC

BO08549.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:26:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG7275-PA 1341 CG7275-RA 477..1338 880..19 4310 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG7275-RA 1495 CG7275-RA 578..1439 880..19 4310 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:39:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15499953..15500505 571..19 2765 100 Minus
3L 28110227 3L 15499588..15499896 880..572 1545 100 Minus
Blast to na_te.dros performed on 2015-02-10 23:39:16 has no hits.

BO08549.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:50:12 Download gff for BO08549.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7275-PA 477..1341 16..880 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:46:08 Download gff for BO08549.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7275-PA 477..1341 16..880 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:05:11 Download gff for BO08549.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7275-RA 578..1439 19..880 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:03:43 Download gff for BO08549.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7275-RA 578..1439 19..880 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:03:43 Download gff for BO08549.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 15499588..15499896 572..880 100 -> Minus
3L 15499953..15500505 19..571 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:05:11 Download gff for BO08549.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15492688..15492996 572..880 100 -> Minus
arm_3L 15493053..15493605 19..571 100   Minus

BO08549.5prime Sequence

839 bp (838 high quality bases) assembled on 2006-01-06

> BO08549.5prime
GAAGTTATCAGTCGACATGAAGGTGAAAATGATTAGTCGCAATCCGGATA
ACTATGTCCGAGAAACCAAACTGCAACAGCACAAAATGCCCAGGAACTAC
GATCCTTCGCTGCATCCTTTGGAGGGTCCCAGGGAATACGTGCGTGCCCT
GAATGCCACCAAGTTGGATCGAGTATTTGCCAAACCCTTCGTCTGCAATT
TGAGCGGGCATCGCGATGGAGTCTCCTGCTTCGGAAAGCATCCCAAGCAA
CTTTCCACCTTGGCCACCGGCGCCTATGACGGCGAAGTGCGCATTTGGGA
CTTGGCGAATCGTATCAGCTCTCGGAACTTTGTGGCCCACGACGGTTTCG
TTCGCGGCATTGCTTACACCCAGAACGGAGGTCGCATTTTCACCGTGGGA
GATGATAAAACCATCAAGGTTTGGAAAGCAGAGGCTCCGGAAGTCGGCGA
GGATGAGGTGCCGGTGAACACTATACTGAGTAAATTTGGACTGCACGGCA
TCTCGCACAATCGCAGGGATAACAAGTTCGCCACCTGTGGCGAGGTATGC
GCCATTTGGGACGAAAGGCACAACGATCCTTTGAAGACATTGAAGTGGGG
CGTCGATACCCTTCACACCATATCCTATAACCCCGTGGAAACAAGCATCC
TGGCGTGCTGTGCCAGCGATCGCAGCATTATCCTGTACGATCAGAGAGAG
GCGCAGCCACTAAGGAAGGTCGTCCTAACCATGAAGAGCAACAAGCTCGC
GTGGAATCCCATGGAGGCGTTCAACTTCACAGTGGCCAACGAGGATTGCA
ACCTTTATACCTTTGACACTCGCAAGCTGCAAACGCCGC

BO08549.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:26:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG7275-PA 1341 CG7275-RA 1..823 17..839 4115 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:09:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG7275-RA 1495 CG7275-RA 102..924 17..839 4115 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:09:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15499182..15499896 87..801 3575 100 Plus
3L 28110227 3L 15499060..15499129 17..86 350 100 Plus
3L 28110227 3L 15499953..15499990 802..839 190 100 Plus
Blast to na_te.dros performed on 2015-02-12 12:09:28 has no hits.

BO08549.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:50:13 Download gff for BO08549.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7275-PA 1..823 17..839 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:46:09 Download gff for BO08549.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7275-PA 1..823 17..839 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:57:22 Download gff for BO08549.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7275-RA 96..924 7..839 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:54:55 Download gff for BO08549.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7275-RA 96..924 7..839 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:54:55 Download gff for BO08549.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 15499054..15499129 7..86 95 -> Plus
3L 15499182..15499896 87..801 100 -> Plus
3L 15499953..15499990 802..839 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:57:22 Download gff for BO08549.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15492154..15492229 7..86 95 -> Plus
arm_3L 15492282..15492996 87..801 100 -> Plus
arm_3L 15493053..15493090 802..839 100   Plus

BO08549.complete Sequence

1372 bp (1372 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ631235

> BO08549.complete
GAAGTTATCAGTCGACATGAAGGTGAAAATGATTAGTCGCAATCCGGATA
ACTATGTCCGAGAAACCAAACTGCAACAGCACAAAATGCCCAGGAACTAC
GATCCTTCGCTGCATCCTTTGGAGGGTCCCAGGGAATACGTGCGTGCCCT
GAATGCCACCAAGTTGGATCGAGTATTTGCCAAACCCTTCGTCTGCAATT
TGAGCGGGCATCGCGATGGAGTCTCCTGCTTCGGAAAGCATCCCAAGCAA
CTTTCCACCTTGGCCACCGGCGCCTATGACGGCGAAGTGCGCATTTGGGA
CTTGGCGAATCGTATCAGCTCTCGGAACTTTGTGGCCCACGACGGTTTCG
TTCGCGGCATTGCTTACACCCAGAACGGAGGTCGCATTTTCACCGTGGGA
GATGATAAAACCATCAAGGTTTGGAAAGCAGAGGCTCCGGAAGTCGGCGA
GGATGAGGTGCCGGTGAACACTATACTGAGTAAATTTGGACTGCACGGCA
TCTCGCACAATCGCAGGGATAACAAGTTCGCCACCTGTGGCGAGGTATGC
GCCATTTGGGACGAAAGGCACAACGATCCTTTGAAGACATTGAAGTGGGG
CGTCGATACCCTTCACACCATATCCTATAACCCCGTGGAAACAAGCATCC
TGGCGTGCTGTGCCAGCGATCGCAGCATTATCCTGTACGATCAGAGAGAG
GCGCAGCCACTAAGGAAGGTCGTCCTAACCATGAAGAGCAACAAGCTCGC
GTGGAATCCCATGGAGGCGTTCAACTTCACAGTGGCCAACGAGGATTGCA
ACCTTTATACCTTTGACACTCGCAAGCTGCAAACGCCGCTGAAGGTTCAC
TTTGACCATGTTTCCGCTGTCACCGATGTTGACTACTCGCCCACTGGCAA
GGAATTCGTCTCGGCCAGCTACGACAAGACCATTCGGATCTACAATGCCC
ACCACAGTCACTCGCGGGATATTTACCACACAAAACGCATGCAGCATGTG
GTCTGCGTGGCCTGGTCCCTCGATAATCGATACGTTTTCTCCGGCTCCGA
CGAAATGAACGTCCGCATGTGGAAGGCGAATGCCTCCGAAAAGCTGGGCG
TCATCCGTCCACGTGAGCGCGTCAATTTCAATTACCAGGAGGCGCTGAAG
CAAAAGTATGCCGCTCATCCGCAGATCAAGCGCATCGCGCGCCATCGCCA
GGTGCCGCGTCACGTGCTCAATGCACAGAAGAAGATGCGCACGGTCAAGG
AGAAGGAGCAGGTCAAGGAGGCCAATGTGCGCAAGCACACCAAGAAGAGC
AAGAAGGTGCCCTACGTCAGCGAGAAAAAGAAGCATGTGCTGAAGGAGGA
GGTGGCAAGCTTTCTAGACCAT

BO08549.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:25:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG7275-RA 1341 CG7275-PA 1..1338 17..1354 6690 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:25:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG7275-RA 1495 CG7275-RA 102..1439 17..1354 6690 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:25:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15499182..15499896 87..801 3575 100 Plus
3L 28110227 3L 15499953..15500505 802..1354 2765 100 Plus
3L 28110227 3L 15499060..15499129 17..86 350 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:25:29 has no hits.

BO08549.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:11:34 Download gff for BO08549.complete
Subject Subject Range Query Range Percent Splice Strand
CG7275-RA 1..1341 17..1357 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:32:23 Download gff for BO08549.complete
Subject Subject Range Query Range Percent Splice Strand
CG7275-RA 91..1434 7..1354 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:50:40 Download gff for BO08549.complete
Subject Subject Range Query Range Percent Splice Strand
CG7275-RA 102..1439 17..1356 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:11:36 Download gff for BO08549.complete
Subject Subject Range Query Range Percent Splice Strand
CG7275-RA 91..1434 7..1354 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:18:10 Download gff for BO08549.complete
Subject Subject Range Query Range Percent Splice Strand
CG7275-RA 102..1439 17..1356 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:18:10 Download gff for BO08549.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15499060..15499129 17..86 100 -> Plus
3L 15499182..15499896 87..801 100 -> Plus
3L 15499953..15500505 802..1356 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:50:40 Download gff for BO08549.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15492160..15492229 17..86 100 -> Plus
arm_3L 15492282..15492996 87..801 100 -> Plus
arm_3L 15493053..15493605 802..1356 99   Plus

BO08549.pep Sequence

Translation from 16 to 1372

> BO08549.pep
MKVKMISRNPDNYVRETKLQQHKMPRNYDPSLHPLEGPREYVRALNATKL
DRVFAKPFVCNLSGHRDGVSCFGKHPKQLSTLATGAYDGEVRIWDLANRI
SSRNFVAHDGFVRGIAYTQNGGRIFTVGDDKTIKVWKAEAPEVGEDEVPV
NTILSKFGLHGISHNRRDNKFATCGEVCAIWDERHNDPLKTLKWGVDTLH
TISYNPVETSILACCASDRSIILYDQREAQPLRKVVLTMKSNKLAWNPME
AFNFTVANEDCNLYTFDTRKLQTPLKVHFDHVSAVTDVDYSPTGKEFVSA
SYDKTIRIYNAHHSHSRDIYHTKRMQHVVCVAWSLDNRYVFSGSDEMNVR
MWKANASEKLGVIRPRERVNFNYQEALKQKYAAHPQIKRIARHRQVPRHV
LNAQKKMRTVKEKEQVKEANVRKHTKKSKKVPYVSEKKKHVLKEEVASFL
DH

BO08549.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:14:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG7275-PA 446 CG7275-PA 1..446 1..446 2379 100 Plus
Poc1-PA 391 CG10191-PA 13..300 61..355 203 24.4 Plus
Poc1-PB 403 CG10191-PB 13..300 61..355 203 24.4 Plus
CG3436-PC 347 CG3436-PC 91..340 59..306 167 26.3 Plus
CG3436-PA 347 CG3436-PA 91..340 59..306 167 26.3 Plus