Clone Sequence Records
BO08553.3prime Sequence
793 bp (791 high quality bases) assembled on 2006-01-06
> BO08553.3prime
ATGGTCTAGAAAGCTTGCGGAAAACAATGCCTGCAGCATGATATAGACTA
ATAGCACAGTCGCCAGAATAAATATTCCCAGGAGTGGGGCACCCCACACC
AGTTGTCCAAAGATCATCGAACAACCGATCGTTGTGAGAGCGGGTATAGA
GCCCAATGGTCGTAGGCAAACTCGCGGAGGAACCAGATTTTCACATATTT
CAACGTGGCCGGAGCTTTTGTCAAACCACTGTTCCGTCATCGGAGCGTAC
AACAGTTGCCGGGCCACTTTTCCGAAGTAATCGTCGCGGACGTAGAATCC
TTGTAATTGACTACCATACTTATTGTTAATCTTTTCCGAAACGAAATGCA
GCATTCTTACCAATGCTCTAACTTCATTGGTTTGGATGGGCAGCGTGGCG
GGATCGACAGCGGCATGCAGGCTAGAAGCATTGAGCGACATTTGGTGCGG
GTTCAGCTTTGAGGTGTCCAAAGTGTCGCTGGCGTCGAAAAAGCTGAAAT
TTTGCACAGCAGGCGCAGAAGGCACAGATGGTTCCTCTGGCAGAGTTTCA
TGCATAGATAGATTCGCTTGATCAACATTAAACGTTCGACAGAATGCGTC
GATGCATTGACGCAAAACCTCCGGAATGCGACTGAACTCGCGCAGGGTCA
CTTCTTCCTGGGTGCACTCGCCAAAGATCTTCTTATAAAAGTTCTTAAGA
AATCCTTCAGACCGCTGTCTCTCCGCAATTTCATTTCGTAGCTTGGCGAT
GTCTCTGAGCACCGAGTTGCGGGCCATACTGATTAGCAACAAG
BO08553.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:26:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6962-PA | 2304 | CG6962-RA | 1527..2301 | 793..19 | 3875 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 14:49:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6962-RA | 2492 | CG6962-RA | 1637..2411 | 793..19 | 3875 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 14:49:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11879783..11880084 | 19..320 | 1510 | 100 | Plus |
| 3R | 32079331 | 3R | 11880138..11880395 | 319..576 | 1290 | 100 | Plus |
| 3R | 32079331 | 3R | 11880453..11880671 | 575..793 | 1095 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 14:49:57 has no hits.
BO08553.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:50:19 Download gff for
BO08553.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6962-PA | 1527..2304 | 18..793 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:46:19 Download gff for
BO08553.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6962-PA | 1527..2304 | 18..793 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:59:55 Download gff for
BO08553.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6962-RA | 1637..2417 | 10..793 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:39:40 Download gff for
BO08553.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6962-RA | 1637..2417 | 10..793 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:39:40 Download gff for
BO08553.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11879777..11880082 | 10..318 | 98 | <- | Plus |
| 3R | 11880138..11880395 | 319..576 | 100 | <- | Plus |
| 3R | 11880455..11880671 | 577..793 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:59:55 Download gff for
BO08553.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7705499..7705804 | 10..318 | 98 | <- | Plus |
| arm_3R | 7705860..7706117 | 319..576 | 100 | <- | Plus |
| arm_3R | 7706177..7706393 | 577..793 | 100 | | Plus |
BO08553.5prime Sequence
952 bp (783 high quality bases) assembled on 2006-01-06
> BO08553.5prime
GAAGTTATCAGTCGACATGTCGCAGACCATGCCGCCAGAAAACCTAAGCA
GCCGCCTGTTGACGGTGCTCAGTTTGCCTCTATTCGAGCGCGTGCACGAG
CTGAGCATCCTGTTCGATCGGTGCTCCTTGCGCCAAGTGCAGGAGATCTT
CCCCCACGTTGTGCACTCCATCTTCGGGATAGATGGCAATCCGTTGGGCT
GGGGCCTGCGGACCACGACGCTTGAAAACAATCCGGTGCAATTCCAAACG
CTGCACCAGTTCTTCGGCGTCTGTGGTCCCCTGATGCATGTTTGCCACCG
TCTGCTCGTCGACCAGTACAAATTCGAACTAGACATCAATCTGCTGCCGG
CGAAATTCGTTAGCCTGCTGCAGAATGGTCAGAATCCTAGTTTCTATGCA
GAACTCATCAATGTGGAGACGATGATGCACCAGGTGTCCACGCTCTCGCT
CAACGCCTTCGACTTCTATGTGATTCACTTTGTGCTATATGCCCTGCAGC
CACTACACTCTATCAATCCCATAGCCATGCAAATCCACAATGTGCGCAGC
AAAACGGTCTACTTGAAACTGGTGGCCGAGTACCTTAACAACTTCCTGCC
GCTGCTTCCCGATGCACGCATAGAACCGGTGCACTTTAGCAGCGGGGTTA
AGGCGCCACAGCCATTGCCAGCCCAAGCATTACAGCCCCAAAGACAACCG
CGCTACATTAAGATTCCCAGCTCCTATCGCAATGGTGGAAACGTGTCGGG
CGGCGGTGGCATTCCCAGTGCAAGCGTTGGCGTCGGGAACATATCACCAC
AGTCCAACAGCCCAAGTGCCAGCTCCAACCGGGCTTACGCATGGCGATCT
GAAAGTGTACTCCACTTTTTCGTAGACATCTGGCTGCGTTACGACATCGA
GTCGGAGCATCATTTGCCCAGCAGCGATTTTGTGCGCGGCGTACGCACCT
TG
BO08553.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:26:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6962-PA | 2304 | CG6962-RA | 1..936 | 17..952 | 4680 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:03:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6962-RA | 2492 | CG6962-RA | 110..1046 | 16..952 | 4685 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:03:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11881379..11881982 | 952..349 | 3020 | 100 | Minus |
| 3R | 32079331 | 3R | 11882035..11882335 | 350..50 | 1505 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 12:03:44 has no hits.
BO08553.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:50:20 Download gff for
BO08553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6962-PA | 1..936 | 17..952 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:46:20 Download gff for
BO08553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6962-PA | 1..936 | 17..952 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:56:16 Download gff for
BO08553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6962-RA | 106..1046 | 12..952 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:53:54 Download gff for
BO08553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6962-RA | 106..1046 | 12..952 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:53:54 Download gff for
BO08553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11881379..11881981 | 350..952 | 100 | <- | Minus |
| 3R | 11882036..11882335 | 50..349 | 100 | <- | Minus |
| 3R | 11882392..11882429 | 12..49 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:56:16 Download gff for
BO08553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7708114..7708151 | 12..49 | 94 | | Minus |
| arm_3R | 7707101..7707703 | 350..952 | 100 | <- | Minus |
| arm_3R | 7707758..7708057 | 50..349 | 100 | <- | Minus |
BO08553.complete Sequence
2335 bp (2335 high quality bases) assembled on 2006-08-21
GenBank Submission: FJ631236
> BO08553.complete
GAAGTTATCAGTCGACATGTCGCAGACCATGCCGCCAGAAAACCTAAGCA
GCCGCCTGTTGACGGTGCTCAGTTTGCCTCTATTCGAGCGCGTGCACGAG
CTGAGCATCCTGTTCGATCGGTGCTCCTTGCGCCAAGTGCAGGAGATCTT
CCCCCACGTTGTGCACTCCATCTTCGGGATAGATGGCAATCCGTTGGGCT
GGGGCCTGCGGACCACGACGCTTGAAAACAATCCGGTGCAATTCCAAACG
CTGCACCAGTTCTTCGGCGTCTGTGGTCCCCTGATGCATGTTTGCCACCG
TCTGCTCGTCGACCAGTACAAATTCGAACTAGACATCAATCTGCTGCCGG
CGAAATTCGTTAGCCTGCTGCAGAATGGTCAGAATCCTAGTTTCTATGCA
GAACTCATCAATGTGGAGACGATGATGCACCAGGTGTCCACGCTCTCGCT
CAACGCCTTCGACTTCTATGTGATTCACTTTGTGCTATATGCCCTGCAGC
CACTACACTCTATCAATCCCATAGCCATGCAAATCCACAATGTGCGCAGC
AAAACGGTCTACTTGAAACTGGTGGCCGAGTACCTTAACAACTTCCTGCC
GCTGCTTCCCGATGCACGCATAGAACCGGTGCACTTTAGCAGCGGGGTTA
AGGCGCCACAGCCATTGCCAGCCCAAGCATTACAGCCCCAAAGACAACCG
CGCTACATTAAGATTCCCAGCTCCTATCGCAATGGTGGAAACGTGTCGGG
CGGCGGTGGCATTCCCAGTGCAAGCGTTGGCGTCGGGAACATATCACCAC
AGTCCAACAGCCCAAGTGCCAGCTCCAACCGGGCTTACGCATGGCGATCT
GAAAGTGTACTCCACTTTTTCGTAGACATCTGGCTGCGTTACGACATCGA
GTCGGAGCATCATTTGCCCAGCAGCGATTTTGTGCGCGGCGTACGCACCT
TGGTCAAGCAGGTGCACTTTTTTGCAAATGGCGCTCAGCACGACCACAGT
TCGCTGTGCGCGCTGCGTAAGGTATCGTTGAGTATGGTTAAGGCAAGAAT
CTACGCCTTTATTGTTGGTTTGATCGATCGTTGGCCTCTGGACAGCTCGT
TGATGGTGGTGCTGGAGCTTTGGCTCAGTTACATTCAGCCATGGAGATAC
ACCATAGCGTCGCTGAACAATAAAACACCTAGTCTTTCCTACAGGCCGCC
CATTTCGTCCTGCTTCGATGGCTTTATTATCGACAACCTTATTATGTACA
CTCACATATTTATGCAGCTACTGCCACACTTTGGGCGGTTGGACTACACT
GTGTATAGGAACGCATTTATGCTGTACCGTCTGGCCACAATCTTCTCTCA
ACATGATTTAGTAGATAAACTTCAGCGTTTTGAGGCTATACATGCAGGCA
ATTCTTTTGGCTTTGACTCGCCACAGCGCCAAGTCAACATAATGAACAAA
TCCGTTTCTCCAGGCACTCCGTGGAATCAAGCTGTTAACATAAGCTCCGC
CAAACTTTTTAGTTATACTATGCAAACGCAAATGGAAACCTTCTTGTTGC
TAATCAGTATGGCCCGCAACTCGGTGCTCAGAGACATCGCCAAGCTACGA
AATGAAATTGCGGAGAGACAGCGGTCTGAAGGATTTCTTAAGAACTTTTA
TAAGAAGATCTTTGGCGAGTGCACCCAGGAAGAAGTGACCCTGCGCGAGT
TCAGTCGCATTCCGGAGGTTTTGCGTCAATGCATCGACGCATTCTGTCGA
ACGTTTAATGTTGATCAAGCGAATCTATCTATGCATGAAACTCTGCCAGA
GGAACCATCTGTGCCTTCTGCGCCTGCTGTGCAAAATTTCAGCTTTTTCG
ACGCCAGCGACACTTTGGACACCTCAAAGCTGAACCCGCACCAAATGTCG
CTCAATGCTTCTAGCCTGCATGCCGCTGTCGATCCCGCCACGCTGCCCAT
CCAAACCAATGAAGTTAGAGCATTGGTAAGAATGCTGCATTTCGTTTCGG
AAAAGATTAACAATAAGTATGGTAGTCAATTACAAGGATTCTACGTCCGC
GACGATTACTTCGGAAAAGTGGCCCGGCAACTGTTGTACGCTCCGATGAC
GGAACAGTGGTTTGACAAAAGCTCCGGCCACGTTGAAATATGTGAAAATC
TGGTTCCTCCGCGAGTTTGCCTACGACCATTGGGCTCTATACCCGCTCTC
ACAACGATCGGTTGTTCGATGATCTTTGGACAACTGGTGTGGGGTGCCCC
ACTCCTGGGAATATTTATTCTGGCGACTGTGCTATTAGTCTATATCATGC
TGCAGGCATTGTTTTCCGCAAGCTTTCTAGACCAT
BO08553.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:06:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6962-RA | 2304 | CG6962-PA | 1..2301 | 17..2317 | 11505 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:06:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6962-RA | 2492 | CG6962-RA | 110..2411 | 16..2317 | 11510 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:06:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11881155..11881982 | 1176..349 | 4140 | 100 | Minus |
| 3R | 32079331 | 3R | 11880453..11880767 | 1761..1447 | 1575 | 100 | Minus |
| 3R | 32079331 | 3R | 11879783..11880084 | 2317..2016 | 1510 | 100 | Minus |
| 3R | 32079331 | 3R | 11882035..11882335 | 350..50 | 1505 | 100 | Minus |
| 3R | 32079331 | 3R | 11880828..11881097 | 1446..1177 | 1350 | 100 | Minus |
| 3R | 32079331 | 3R | 11880138..11880395 | 2017..1760 | 1290 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:06:57 has no hits.
BO08553.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:55:05 Download gff for
BO08553.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6962-RA | 1..2304 | 17..2318 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:27:23 Download gff for
BO08553.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6962-RA | 107..2418 | 12..2326 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:39:21 Download gff for
BO08553.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6962-RA | 111..2411 | 17..2319 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:55:05 Download gff for
BO08553.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6962-RA | 107..2418 | 12..2326 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:44:49 Download gff for
BO08553.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6962-RA | 111..2411 | 17..2319 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:44:49 Download gff for
BO08553.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11880455..11880767 | 1447..1759 | 100 | <- | Minus |
| 3R | 11880138..11880395 | 1760..2017 | 100 | <- | Minus |
| 3R | 11880828..11881097 | 1177..1446 | 100 | <- | Minus |
| 3R | 11879781..11880082 | 2018..2319 | 99 | <- | Minus |
| 3R | 11881155..11881981 | 350..1176 | 100 | <- | Minus |
| 3R | 11882036..11882335 | 50..349 | 100 | <- | Minus |
| 3R | 11882392..11882424 | 17..49 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:39:21 Download gff for
BO08553.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7705503..7705804 | 2018..2319 | 99 | <- | Minus |
| arm_3R | 7705860..7706117 | 1760..2017 | 100 | <- | Minus |
| arm_3R | 7706177..7706489 | 1447..1759 | 100 | <- | Minus |
| arm_3R | 7706550..7706819 | 1177..1446 | 100 | <- | Minus |
| arm_3R | 7706877..7707703 | 350..1176 | 100 | <- | Minus |
| arm_3R | 7707758..7708057 | 50..349 | 100 | <- | Minus |
| arm_3R | 7708114..7708146 | 17..49 | 100 | | Minus |
BO08553.pep Sequence
Translation from 16 to 2335
> BO08553.pep
MSQTMPPENLSSRLLTVLSLPLFERVHELSILFDRCSLRQVQEIFPHVVH
SIFGIDGNPLGWGLRTTTLENNPVQFQTLHQFFGVCGPLMHVCHRLLVDQ
YKFELDINLLPAKFVSLLQNGQNPSFYAELINVETMMHQVSTLSLNAFDF
YVIHFVLYALQPLHSINPIAMQIHNVRSKTVYLKLVAEYLNNFLPLLPDA
RIEPVHFSSGVKAPQPLPAQALQPQRQPRYIKIPSSYRNGGNVSGGGGIP
SASVGVGNISPQSNSPSASSNRAYAWRSESVLHFFVDIWLRYDIESEHHL
PSSDFVRGVRTLVKQVHFFANGAQHDHSSLCALRKVSLSMVKARIYAFIV
GLIDRWPLDSSLMVVLELWLSYIQPWRYTIASLNNKTPSLSYRPPISSCF
DGFIIDNLIMYTHIFMQLLPHFGRLDYTVYRNAFMLYRLATIFSQHDLVD
KLQRFEAIHAGNSFGFDSPQRQVNIMNKSVSPGTPWNQAVNISSAKLFSY
TMQTQMETFLLLISMARNSVLRDIAKLRNEIAERQRSEGFLKNFYKKIFG
ECTQEEVTLREFSRIPEVLRQCIDAFCRTFNVDQANLSMHETLPEEPSVP
SAPAVQNFSFFDASDTLDTSKLNPHQMSLNASSLHAAVDPATLPIQTNEV
RALVRMLHFVSEKINNKYGSQLQGFYVRDDYFGKVARQLLYAPMTEQWFD
KSSGHVEICENLVPPRVCLRPLGSIPALTTIGCSMIFGQLVWGAPLLGIF
ILATVLLVYIMLQALFSASFLDH
BO08553.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:18:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6962-PA | 767 | CG6962-PA | 1..767 | 1..767 | 3997 | 100 | Plus |
