Clone Sequence Records
BO08554.3prime Sequence
894 bp (811 high quality bases) assembled on 2006-01-06
> BO08554.3prime
ATGGTCTAGAAAGCTTGCGTGCATAGGCGAGGCCAGTCGCGTAGTTGTCT
GCATGCTGTTGCTGCGGTTGTTCGACTTGAGCCGCAGCTCGTTGACGAGC
TTAAAGAGCTGGTCCTGCTTGGATAGCAGTTCGCGGGTTCGCTGGCAGCC
ATGCTGAGGAGCGCACAGACCAGGATTCCAGCGACAGTATAGGCCCTTCC
ACAAGCGGACCGATCTCACGCTGGCAATCGGACGCAGCACTAGCTCGGCG
CCGTGCGTGAACGAGGGAAAGAGTGGATTCAAATACTGGTCCAGCGACGA
GTTGATGTGCGTCCACAGGGATGTTGTCTTGTGCTTGAGATCTTCGGCCA
CACGCTCGGCCTCCGTGTTGCAGAGGAAGGTGCCGAAGCGGCACGAGTAC
AGATGATCCACGATGGTTATCAGGAAGTGCTCGTTGAACTCAAATGCGTT
GTTGAACTGCTGGCTAACCTGCCAGACGCTATCGATAAATTGCAGGAACA
CCGGAGATCTGTCTGCATCCGAGTGCTTGTTGTCGCCGTGACCAATGCGT
TGTTGGAACTTGTGGCCAAAGGAGAGCCACTCCTTCTCAATGAGAACCTC
GAAACCGCGCACTGTGCGATAGTGCGGATCGAGCAGCAACATGGAAAGAG
CAGTCAGCTGGGCTGTGCGATCCCAGCCGTCGGAGCAGTGAACTACGACG
GAGGTGCTCATGGTCTCCACCTTGTCAACAATCCTAACGGCGCCGGCCAG
GATGCACCTAATGTGCTTTAGCCACAGTGTGTTGTCAATAGCCGTCTGCC
ACTTTGAGTCGTCGGTGGTGGGGAAGCAAGCCTCCTTCACTTTGCGTAGG
CTCTCCCGCATCACGTGGATGTTGTGTATGTCGAGGAAGTTGAT
BO08554.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:26:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9115-PA | 1860 | myotubularin-RA | 982..1857 | 894..19 | 4380 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 11:47:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mtm-RB | 2230 | CG9115-RB | 1186..2061 | 894..19 | 4380 | 100 | Minus |
| mtm-RA | 2067 | CG9115-RA | 1088..1963 | 894..19 | 4380 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 11:47:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6035278..6035830 | 342..894 | 2765 | 100 | Plus |
| 2L | 23513712 | 2L | 6034900..6035224 | 19..343 | 1625 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 11:47:25 has no hits.
BO08554.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:50:21 Download gff for
BO08554.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9115-PA | 982..1860 | 15..894 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:46:22 Download gff for
BO08554.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9115-PA | 982..1860 | 15..894 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:43:25 Download gff for
BO08554.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtm-RA | 1108..1986 | 15..894 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:36:05 Download gff for
BO08554.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtm-RA | 1088..1966 | 15..894 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:36:05 Download gff for
BO08554.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6034897..6035222 | 15..341 | 99 | <- | Plus |
| 2L | 6035278..6035830 | 342..894 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:43:25 Download gff for
BO08554.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6034897..6035222 | 15..341 | 99 | <- | Plus |
| arm_2L | 6035278..6035830 | 342..894 | 100 | | Plus |
BO08554.5prime Sequence
896 bp (767 high quality bases) assembled on 2006-01-06
> BO08554.5prime
GAAGTTATCAGTCGACATGGATCCCTCCGCGAGCCTGGCCGACAAGTTGG
CCTCCAAGACTGCCAGCAGCAACTCTCTGGACAGCAGCTCCAAGTCCAGT
TCGCTGGGCTCCAAGCACGGTGGCGGAGAAAACGGCATTCTGCGGGACAC
GCCCTTCGGCTATCTGGAGGGCGAAGAGGACCAGGACCAGAAGAACGACG
TGACCTACGTGTGTCCGTACCGCGGCCCCGTCTTCGGCGCTCTTACCATA
ACCAACTACCGTCTGTACTTCCGGTCGCTTCCCCTGCGGGATCAGGAGCC
GCCCGTCGTCGTCGACGTGCCTCTGGGCGTGATCGCGCGTGTGGAGAAGA
TTGGAGGTGCCACGTCTCGCGGTGAGAACTCGTACGGCATCGAGATTTTC
TGCAAGGACATGCGAAACCTGCGATTCGCCCACAAGCAGCAGAATCATTC
GCGGAGGACGGTGTTTGAGAAACTGCAGGCCAACGCCTTTCCGCTCTCGT
ACAGTGGGCGCCTCTTTGCATTCGCCCACGCCGCGGCCAACTCTGTGAAC
GGTAACGGAGGCTGGGACGGCTGGGCGGTATATGAACCGCTGGCGGAGCT
GCGCCGCTTGGGCGTTCCCAACGATATGTGGCGGGCGACCAAGCTAAACG
AGTCCTACGCAATTTGCGACAGCTATCCGGCCGTGTGGGCTGTGCCCAAA
GCGGCCTCCGATGATTTCCTGAGGCGCGTGGCACAGTTCCGATCGCGCTG
CCGCCTGCCGGTTTTGTCCTGGATGAACCCACGGACTNCAGCGACCATTA
CAAGGTGTTCCCAGCCGCTGGTGGGTGTAAGTGGCAAGCGAAATTCCGAC
GATGAAGCATACCTAAAGCTTATCATGGAGGCGAACGCCCAGTCAG
BO08554.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:26:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9115-PA | 1860 | myotubularin-RA | 1..850 | 17..866 | 4206 | 99.7 | Plus |
| CG9115-PA | 1860 | myotubularin-RA | 854..880 | 870..896 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 10:18:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mtm-RB | 2230 | CG9115-RB | 205..1084 | 17..896 | 4329 | 99.5 | Plus |
| mtm-RA | 2067 | CG9115-RA | 107..986 | 17..896 | 4329 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 10:18:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6035932..6036811 | 896..17 | 4329 | 99.4 | Minus |
Blast to na_te.dros performed on 2015-02-02 10:18:17 has no hits.
BO08554.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:50:22 Download gff for
BO08554.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9115-PA | 1..880 | 17..896 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:46:23 Download gff for
BO08554.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9115-PA | 1..880 | 17..896 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:27:58 Download gff for
BO08554.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtm-RA | 118..1006 | 9..896 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:38:09 Download gff for
BO08554.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtm-RA | 98..986 | 9..896 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:38:09 Download gff for
BO08554.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6035932..6036820 | 9..896 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:27:58 Download gff for
BO08554.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6035932..6036820 | 9..896 | 99 | | Minus |
BO08554.complete Sequence
1891 bp (1891 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631237
> BO08554.complete
GAAGTTATCAGTCGACATGGATCCCTCCGCGAGCCTGGCCGACAAGTTGG
CCTCCAAGACTGCCAGCAGCAACTCTCTGGACAGCAGCTCCAAGTCCAGT
TCGCTGGGCTCCAAGCACGGTGGCGGAGAAAACGGCATTCTGCGGGACAC
GCCCTTCGGCTATCTGGAGGGCGAAGAGGACCAGGACCAGAAGAACGACG
TGACCTACGTGTGTCCGTACCGCGGCCCCGTCTTCGGCGCTCTTACCATA
ACCAACTACCGTCTGTACTTCCGGTCGCTTCCCCTGCGGGATCAGGAGCC
GCCCGTCGTCGTCGACGTGCCTCTGGGCGTGATCGCGCGTGTGGAGAAGA
TTGGAGGTGCCACGTCTCGCGGTGAGAACTCGTACGGCATCGAGATTTTC
TGCAAGGACATGCGAAACCTGCGATTCGCCCACAAGCAGCAGAATCATTC
GCGGAGGACGGTGTTTGAGAAACTGCAGGCCAACGCCTTTCCGCTCTCGT
ACAGTGGGCGCCTCTTTGCATTCGCCCACGCCGCGGCCAACTCTGTGAAC
GGTAACGGAGGCTGGGACGGCTGGGCGGTATATGAACCGCTGGCGGAGCT
GCGCCGCTTGGGCGTTCCCAACGATATGTGGCGGGCGACCAAGCTAAACG
AGTCCTACGCAATTTGCGACAGCTATCCGGCCGTGTGGGCTGTGCCCAAA
GCGGCCTCCGATGATTTCCTGAGGCGCGTGGCACAGTTCCGATCGCGCTG
CCGCCTGCCGGTTTTGTCCTGGATGAACCCACGGACTCAAGCGACCATTA
CAAGGTGTTCCCAGCCGCTGGTGGGTGTAAGTGGCAAGCGAAATTCCGAC
GATGAAGCATACCTAAGCTTTATCATGGAGGCGAACGCCCAGTCAGACAA
GTTGACCATCATGGATGCGCGACCAAGCGCCAATGCGATTGCTAACAAGG
CCAAGGGCGGCGGCTACGAGTCAGAGGACGCGTACAAGAACGTGGAAATC
AACTTCCTCGACATACACAACATCCACGTGATGCGGGAGAGCCTACGCAA
AGTGAAGGAGGCTTGCTTCCCCACCACCGACGACTCAAAGTGGCAGACGG
CTATTGACAACACACTGTGGCTAAAGCACATTAGGTGCATCCTGGCCGGC
GCCGTTAGGATTGTTGACAAGGTGGAGACCATGAGCACCTCCGTCGTAGT
TCACTGCTCCGACGGCTGGGATCGCACAGCCCAGCTGACTGCTCTTTCCA
TGTTGCTGCTCGATCCGCACTATCGCACAGTGCGCGGTTTCGAGGTTCTC
ATTGAGAAGGAGTGGCTCTCCTTTGGCCACAAGTTCCAACAACGCATTGG
TCACGGCGACAACAAGCACTCGGATGCAGACAGATCTCCGGTGTTCCTGC
AATTTATCGATAGCGTCTGGCAGGTTAGCCAGCAGTTCAACAACGCATTT
GAGTTCAACGAGCACTTCCTGATAACCATCGTGGATCATCTGTACTCGTG
CCGCTTCGGCACCTTCCTCTGCAACACGGAGGCCGAGCGTGTGGCCGAAG
ATCTCAAGCACAAGACAACATCCCTGTGGACGCACATCAACTCGTCGCTG
GACCAGTATTTGAATCCACTCTTTCCCTCGTTCACGCACGGCGCCGAGCT
AGTGCTGCGTCCGATTGCCAGCGTGAGATCGGTCCGCTTGTGGAAGGGCC
TATACTGTCGCTGGAATCCTGGTCTGTGCGCTCCTCAGCATGGCTGCCAG
CGAACCCGCGAACTGCTATCCAAGCAGGACCAGCTCTTTAAGCTCGTCAA
CGAGCTGCGGCTCAAGTCGAACAACCGCAGCAACAGCATGCAGACAACTA
CGCGACTGGCCTCGCCTATGCACGCAAGCTTTCTAGACCAT
BO08554.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:00:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mtm-RB | 1860 | CG9115-PB | 1..1857 | 17..1873 | 9285 | 100 | Plus |
| mtm-RA | 1860 | CG9115-PA | 1..1857 | 17..1873 | 9285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:00:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mtm-RB | 2230 | CG9115-RB | 205..2061 | 17..1873 | 9285 | 100 | Plus |
| mtm-RA | 2067 | CG9115-RA | 107..1963 | 17..1873 | 9285 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:00:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6035278..6036811 | 1550..17 | 7670 | 100 | Minus |
| 2L | 23513712 | 2L | 6034900..6035224 | 1873..1549 | 1625 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:00:01 has no hits.
BO08554.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:00:25 Download gff for
BO08554.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtm-RA | 1..1860 | 17..1877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:18:43 Download gff for
BO08554.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtm-RA | 101..1969 | 9..1877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:41:32 Download gff for
BO08554.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtm-RA | 127..1983 | 17..1875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:00:25 Download gff for
BO08554.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtm-RA | 101..1969 | 9..1877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:15:57 Download gff for
BO08554.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtm-RA | 107..1963 | 17..1875 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:15:57 Download gff for
BO08554.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6034898..6035222 | 1551..1875 | 99 | <- | Minus |
| 2L | 6035278..6036811 | 17..1550 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:41:32 Download gff for
BO08554.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6034898..6035222 | 1551..1875 | 99 | <- | Minus |
| arm_2L | 6035278..6036811 | 17..1550 | 100 | | Minus |
BO08554.pep Sequence
Translation from 16 to 1891
> BO08554.pep
MDPSASLADKLASKTASSNSLDSSSKSSSLGSKHGGGENGILRDTPFGYL
EGEEDQDQKNDVTYVCPYRGPVFGALTITNYRLYFRSLPLRDQEPPVVVD
VPLGVIARVEKIGGATSRGENSYGIEIFCKDMRNLRFAHKQQNHSRRTVF
EKLQANAFPLSYSGRLFAFAHAAANSVNGNGGWDGWAVYEPLAELRRLGV
PNDMWRATKLNESYAICDSYPAVWAVPKAASDDFLRRVAQFRSRCRLPVL
SWMNPRTQATITRCSQPLVGVSGKRNSDDEAYLSFIMEANAQSDKLTIMD
ARPSANAIANKAKGGGYESEDAYKNVEINFLDIHNIHVMRESLRKVKEAC
FPTTDDSKWQTAIDNTLWLKHIRCILAGAVRIVDKVETMSTSVVVHCSDG
WDRTAQLTALSMLLLDPHYRTVRGFEVLIEKEWLSFGHKFQQRIGHGDNK
HSDADRSPVFLQFIDSVWQVSQQFNNAFEFNEHFLITIVDHLYSCRFGTF
LCNTEAERVAEDLKHKTTSLWTHINSSLDQYLNPLFPSFTHGAELVLRPI
ASVRSVRLWKGLYCRWNPGLCAPQHGCQRTRELLSKQDQLFKLVNELRLK
SNNRSNSMQTTTRLASPMHASFLDH
BO08554.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:58:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mtm-PB | 619 | CG9115-PB | 1..619 | 1..619 | 3277 | 100 | Plus |
| mtm-PA | 619 | CG9115-PA | 1..619 | 1..619 | 3277 | 100 | Plus |
| CG3530-PC | 639 | CG3530-PC | 3..452 | 106..570 | 857 | 40.3 | Plus |
| CG3530-PB | 689 | CG3530-PB | 53..502 | 106..570 | 857 | 40.3 | Plus |
| CG3530-PA | 761 | CG3530-PA | 125..574 | 106..570 | 857 | 40.3 | Plus |
