Clone BO08560 Report

Search the DGRC for BO08560

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:85
Well:60
Vector:pDNR-Dual
Associated Gene/TranscriptPPP4R2r-RA
Protein status:BO08560.pep: validated full length
Sequenced Size:1861

Clone Sequence Records

BO08560.3prime Sequence

927 bp (806 high quality bases) assembled on 2006-01-06

> BO08560.3prime
ATGGTCTAGAAAGCTTGCCTGCATCATCACCTCCTGGCTGGTGTCATCGA
TCTCCATGGCGGCCGGATCGTCCTTGGCGGCCTCTTCGGTGGCCATTGCG
CCGGCATTGGCGCTTTCGGCCATTACCACCTCCTCGACGGTGGCCGACGG
CGAGACGCGTGCCTCCTCCTCGGCTGGAGTATCCTCCATGGGCTGGTCGT
TGAGGGCCAAGACAGGCGGAGTTACAGCGGCGACCAAGGGCGAAGCCTGC
GAGTCATCGCCTGTCTCAGCAGGCGGCGTCTCAGCAGCGGAATCGGCAGC
GCCCAAAGGAGATTGCGGTGTGGTTGCAGCTGCCAGATCTTCCACAGCAG
GACTAGAAGCATCCTCAACCGGCGACTTCTCGACTGACTCCTGGGCTGCC
TCGGTCGCTTTGGAAGTGGTCAAGTCGTTCCTATTCTCGCTTTCTGCATT
CGGCTCGGCAGCCTGCTTTTCATCCGAAACCGACTTCTCGGCCGCCTCAG
TTTCAGTCTTTTCCGGTTGGCTCTTCTTGGTCTCGGCCTCTGGATCGTCC
TCAGATTTGGTCTTCGGTTTCGATTCGGAGGAAGCTATCTTTTCTTCAGC
GGGTTTTTCTGCTGATGGGGCATCGTCAGTCTCAGTAGAGTCGATATCGT
CCTGCTTTTCAGTTTTAATTGGTGCATGTTTTTTCTCCTCCTTTTCGTTT
TCTGCCTTGACTTTGACAGGCTCCTGGTTTTCCCCATCGGCAGGCGGTGT
AGATTTCTTGACAACTGCCTTGTCGCCTAACTGTGCCACCTTTCCGTCCG
GTTTATCAGACTCGACGACCTCTTCCTTCTTTACAATCTCTTCTTTTGGC
TCGATTGCCACCTTTTTGTCCTCCTCCCCTCTCTTTTCCTGAGCAACAAG
TTCTTTCTCAGCTTCTATGGATTTGCT

BO08560.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:26:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG2890-PA 1830 PPP4R2r-RA 968..1827 878..19 4300 100 Minus
CG2890-PB 1830 PPP4R2r-RB 968..1827 878..19 4300 100 Minus
CG2890-PC 1830 PPP4R2r-RC 968..1827 878..19 4300 100 Minus
CG2890-PA 1830 PPP4R2r-RA 919..964 927..882 230 100 Minus
CG2890-PB 1830 PPP4R2r-RB 919..964 927..882 230 100 Minus
CG2890-PC 1830 PPP4R2r-RC 919..964 927..882 230 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:09:01
Subject Length Description Subject Range Query Range Score Percent Strand
PPP4R2r-RD 2473 CG2890-RD 1126..2034 927..19 4500 99.8 Minus
PPP4R2r-RC 2409 CG2890-RC 1062..1970 927..19 4500 99.8 Minus
PPP4R2r-RB 2397 CG2890-RB 1050..1958 927..19 4500 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:08:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10480596..10481504 927..19 4500 99.7 Minus
Blast to na_te.dros performed on 2015-02-12 12:08:57 has no hits.

BO08560.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:50:33 Download gff for BO08560.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2890-PA 919..1830 18..927 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:46:39 Download gff for BO08560.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2890-PC 919..1830 18..927 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:49:43 Download gff for BO08560.3prime
Subject Subject Range Query Range Percent Splice Strand
PPP4R2r-RB 1050..1964 11..927 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:53:38 Download gff for BO08560.3prime
Subject Subject Range Query Range Percent Splice Strand
PPP4R2r-RB 1050..1964 11..927 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:53:38 Download gff for BO08560.3prime
Subject Subject Range Query Range Percent Splice Strand
X 10480596..10481510 11..927 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:49:43 Download gff for BO08560.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 10374629..10375543 11..927 99   Minus

BO08560.5prime Sequence

965 bp (871 high quality bases) assembled on 2006-01-06

> BO08560.5prime
GAAGTTATCAGTCGACATGGTCACCATGGAAAACAGCGACGAGATAATGC
AGATCCTAGAGCGCTTTACGGATCTTAAACAAAAGGAGATCCCAAAGGAG
CTGGAGGAGTACCTACAGTATGTGGCCAAGACCGGCGACACCATCTTCAA
GTGGTCCAGCCTGAAGTACTTGTTCCGCGAGAAGCTGCTCAGCGTGATCA
AGCACTTTAATGAGGATTCGCCGCGTTTGGAGGAGATTCCCAACTATCCG
AATGTGGACCCTTTCAACTACGAGACCATGAAGTCCTCGTTGCTGGAGCG
CTTGGACCTTTTCAATGCAGCTCCTTTTACCGTGCAGCGGTTGTGCGAGC
TACTAATCGATCCTCGGAAGCAGTACTCGCGCATCGATAAGTTTATGCGT
GCTTTGGAAAAGAATATTTTAGTGGTTAGCACAATCGATCCTGGACGCAA
GCGTACCGAAAGTGAGAATGGCGACTCGCTGGACTCAGTGGTCAACGGGG
ACCTCTCCATGGAGGTGAACATTGACATTGAAATGGAGAATAATAACGGT
AACGCCGATGAGGGCTCATCTCCCGGCGCCGGTTCGGCAGGTTGTGCCCA
GAAGGCAAGCTGCCCGCGTTCGGACGACAATGATCAGCCCAAGGCCAAGA
AGGCAAAACTGGAGATCGATGGTGAAGAGCGTTCGGAAGCGAGCGATGAA
ACGGACACAGAAGTGGCAACCAGGGTCAAAAATGAAAAGGATGAGAAGAA
TGACAACGATGAGACTGATTCGCCGCATGAGGCTGCCGAGATCGAGGAGC
CCGATGAAGAGGTGGATGAGGCTGATCAGGAGACCAAGACCACCAAGCAG
CCTGCTTACGGCAGTCAGAAGGAGGGCGAGCAGGAGGAAGTTTCCCATCA
TCTGCCGATGACGAGGCGGAGGACCCCATGGTGAGCAAATCATAGAAGCT
GAGAAAGAACTTGTT

BO08560.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:26:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG2890-PA 1830 PPP4R2r-RA 1..873 17..889 4365 100 Plus
CG2890-PB 1830 PPP4R2r-RB 1..873 17..889 4365 100 Plus
CG2890-PC 1830 PPP4R2r-RC 1..873 17..889 4365 100 Plus
CG2890-PA 1830 PPP4R2r-RA 873..926 888..941 245 98.1 Plus
CG2890-PB 1830 PPP4R2r-RB 873..926 888..941 245 98.1 Plus
CG2890-PC 1830 PPP4R2r-RC 873..926 888..941 245 98.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:01:41
Subject Length Description Subject Range Query Range Score Percent Strand
PPP4R2r-RC 2409 CG2890-RC 144..1094 17..965 4690 99.7 Plus
PPP4R2r-RB 2397 CG2890-RB 132..1082 17..965 4690 99.7 Plus
PPP4R2r-RA 2426 CG2890-RA 161..1111 17..965 4690 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:01:33
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10480082..10480628 421..965 2620 99.5 Plus
X 23542271 X 10479501..10479717 17..233 1085 100 Plus
X 23542271 X 10479835..10480024 233..422 950 100 Plus
Blast to na_te.dros performed on 2015-02-11 11:01:37 has no hits.

BO08560.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:50:34 Download gff for BO08560.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2890-PA 1..951 17..965 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:46:40 Download gff for BO08560.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2890-PC 1..951 17..965 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:02:41 Download gff for BO08560.5prime
Subject Subject Range Query Range Percent Splice Strand
PPP4R2r-RA 152..1111 7..965 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:40:15 Download gff for BO08560.5prime
Subject Subject Range Query Range Percent Splice Strand
PPP4R2r-RA 152..1111 7..965 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:40:15 Download gff for BO08560.5prime
Subject Subject Range Query Range Percent Splice Strand
X 10479836..10480024 234..422 100 -> Plus
X 10479492..10479717 7..233 98 -> Plus
X 10480084..10480628 423..965 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:02:41 Download gff for BO08560.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 10373525..10373750 7..233 98 -> Plus
arm_X 10373869..10374057 234..422 100 -> Plus
arm_X 10374117..10374661 423..965 99   Plus

BO08560.complete Sequence

1861 bp (1861 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631238

> BO08560.complete
GAAGTTATCAGTCGACATGGTCACCATGGAAAACAGCGACGAGATAATGC
AGATCCTAGAGCGCTTTACGGATCTTAAACAAAAGGAGATCCCAAAGGAG
CTGGAGGAGTACCTACAGTATGTGGCCAAGACCGGCGACACCATCTTCAA
GTGGTCCAGCCTGAAGTACTTGTTCCGCGAGAAGCTGCTCAGCGTGATCA
AGCACTTTAATGAGGATTCGCCGCGTTTGGAGGAGATTCCCAACTATCCG
AATGTGGACCCTTTCAACTACGAGACCATGAAGTCCTCGTTGCTGGAGCG
CTTGGACCTTTTCAATGCAGCTCCTTTTACCGTGCAGCGGTTGTGCGAGC
TACTAATCGATCCTCGGAAGCAGTACTCGCGCATCGATAAGTTTATGCGT
GCTTTGGAAAAGAATATTTTAGTGGTTAGCACAATCGATCCTGGACGCAA
GCGTACCGAAAGTGAGAATGGCGACTCGCTGGACTCAGTGGTCAACGGGG
ACCTCTCCATGGAGGTGAACATTGACATTGAAATGGAGAATAATAACGGT
AACGCCGATGAGGGCTCATCTCCCGGCGCCGGTTCGGCAGGTTGTGCCCA
GAAGGCAAGCTGCCCGCGTTCGGACGACAATGATCAGCCCAAGGCCAAGA
AGGCAAAACTGGAGATCGATGGTGAAGAGCGTTCGGAAGCGAGCGATGAA
ACGGACACAGAAGTGGCAACCAGGGTCAAAAATGAAAAGGATGAGAAGAA
TGACAACGATGAGACTGATTCGCCGCATGAGGCTGCCGAGATCGAGGAGC
CCGATGAAGAGGTGGATGAGGCTGATCAGGAGACCAAGACCACCAAGCAG
CCTGCTTACGGCAGTCAGAAGGAGGGCGAGCAGGAGGAAAGTTTCCCATC
ATCTGCCGATGACGAGGCGGAGGACCCAATGGTGAGCAAATCCATAGAAG
CTGAGAAAGAACTTGTTGCTCAGGAAAAGAAGAGGGAGGAGGACAAAAAG
GTGGCAATCGAGCCAAAAGAAGAGATTGTAAAGAAGGAAGAGGTCGTCGA
GTCTGATAAACCGGACGGAAAGGTGGCACAGTTAGGCGACAAGGCAGTTG
TCAAGAAATCTACACCGCCTGCCGATGGGGAAAACCAGGAGCCTGTCAAA
GTCAAGGCAGAAAACGAAAAGGAGGAGAAAAAACATGCACCAATTAAAAC
TGAAAAGCAGGACGATATCGACTCTACTGAGACTGACGATGCCCCATCAG
CAGAAAAACCCGCTGAAGAAAAGATAGCTTCCTCCGAATCGAAACCGAAG
ACCAAATCTGAGGACGATCCAGAGGCCGAGACCAAGAAGAGCCAACCGGA
AAAGACTGAAACTGAGGCGGCCGAGAAGTCGGTTTCGGATGAAAAGCAGG
CTGCCGAGCCGAATGCAGAAAGCGAGAATAGGAACGACTTGACCACTTCC
AAAGCGACCGAGGCAGCCCAGGAGTCAGTCGAGAAGTCGCCGGTTGAGGA
TGCTTCTAGTCCTGCTGTGGAAGATCTGGCAGCTGCAACCACACCGCAAT
CTCCTTTGGGCGCTGCCGATTCCGCTGCTGAGACGCCGCCTGCTGAGACA
GGCGATGACTCGCAGGCTTCGCCCTTGGTCGCCGCTGTAACTCCGCCTGT
CTTGGCCCTCAACGACCAGCCCATGGAGGATACTCCAGCCGAGGAGGAGG
CACGCGTCTCGCCGTCGGCCACCGTCGAGGAGGTGGTAATGGCCGAAAGC
GCCAATGCCGGCGCAATGGCCACCGAAGAGGCCGCCAAGGACGATCCGGC
CGCCATGGAGATCGATGACACCAGCCAGGAGGTGATGATGCAGGCAAGCT
TTCTAGACCAT

BO08560.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:07:33
Subject Length Description Subject Range Query Range Score Percent Strand
PPP4R2r-RC 1830 CG2890-PC 1..1827 17..1843 9135 100 Plus
PPP4R2r-RB 1830 CG2890-PB 1..1827 17..1843 9135 100 Plus
PPP4R2r-RA 1830 CG2890-PA 1..1827 17..1843 9135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:07:34
Subject Length Description Subject Range Query Range Score Percent Strand
PPP4R2r-RC 2409 CG2890-RC 144..1970 17..1843 9135 100 Plus
PPP4R2r-RB 2397 CG2890-RB 132..1958 17..1843 9135 100 Plus
PPP4R2r-RA 2426 CG2890-RA 161..1987 17..1843 9135 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:07:31
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10480082..10481504 421..1843 7115 100 Plus
X 23542271 X 10479501..10479717 17..233 1085 100 Plus
X 23542271 X 10479835..10480024 233..422 950 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:07:32 has no hits.

BO08560.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:00:10 Download gff for BO08560.complete
Subject Subject Range Query Range Percent Splice Strand
PPP4R2r-RC 1..1830 17..1844 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:18:24 Download gff for BO08560.complete
Subject Subject Range Query Range Percent Splice Strand
PPP4R2r-RC 140..1981 7..1851 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:06:00 Download gff for BO08560.complete
Subject Subject Range Query Range Percent Splice Strand
PPP4R2r-RA 161..1987 17..1845 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:00:10 Download gff for BO08560.complete
Subject Subject Range Query Range Percent Splice Strand
PPP4R2r-RC 140..1981 7..1851 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:03:36 Download gff for BO08560.complete
Subject Subject Range Query Range Percent Splice Strand
PPP4R2r-RA 161..1987 17..1845 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:03:36 Download gff for BO08560.complete
Subject Subject Range Query Range Percent Splice Strand
X 10479501..10479717 17..233 100 -> Plus
X 10479836..10480024 234..422 100 -> Plus
X 10480084..10481504 423..1845 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:06:00 Download gff for BO08560.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 10373534..10373750 17..233 100 -> Plus
arm_X 10373869..10374057 234..422 100 -> Plus
arm_X 10374117..10375537 423..1845 99   Plus

BO08560.pep Sequence

Translation from 16 to 1861

> BO08560.pep
MVTMENSDEIMQILERFTDLKQKEIPKELEEYLQYVAKTGDTIFKWSSLK
YLFREKLLSVIKHFNEDSPRLEEIPNYPNVDPFNYETMKSSLLERLDLFN
AAPFTVQRLCELLIDPRKQYSRIDKFMRALEKNILVVSTIDPGRKRTESE
NGDSLDSVVNGDLSMEVNIDIEMENNNGNADEGSSPGAGSAGCAQKASCP
RSDDNDQPKAKKAKLEIDGEERSEASDETDTEVATRVKNEKDEKNDNDET
DSPHEAAEIEEPDEEVDEADQETKTTKQPAYGSQKEGEQEESFPSSADDE
AEDPMVSKSIEAEKELVAQEKKREEDKKVAIEPKEEIVKKEEVVESDKPD
GKVAQLGDKAVVKKSTPPADGENQEPVKVKAENEKEEKKHAPIKTEKQDD
IDSTETDDAPSAEKPAEEKIASSESKPKTKSEDDPEAETKKSQPEKTETE
AAEKSVSDEKQAAEPNAESENRNDLTTSKATEAAQESVEKSPVEDASSPA
VEDLAAATTPQSPLGAADSAAETPPAETGDDSQASPLVAAVTPPVLALND
QPMEDTPAEEEARVSPSATVEEVVMAESANAGAMATEEAAKDDPAAMEID
DTSQEVMMQASFLDH

BO08560.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:58:58
Subject Length Description Subject Range Query Range Score Percent Strand
PPP4R2r-PC 609 CG2890-PC 1..609 1..609 3071 100 Plus
PPP4R2r-PB 609 CG2890-PB 1..609 1..609 3071 100 Plus
PPP4R2r-PA 609 CG2890-PA 1..609 1..609 3071 100 Plus
PPP4R2r-PD 522 CG2890-PD 1..522 88..609 2616 100 Plus
Muc68D-PB 1514 CG6004-PB 325..809 148..605 248 19.5 Plus