Clone Sequence Records
BO08560.3prime Sequence
927 bp (806 high quality bases) assembled on 2006-01-06
> BO08560.3prime
ATGGTCTAGAAAGCTTGCCTGCATCATCACCTCCTGGCTGGTGTCATCGA
TCTCCATGGCGGCCGGATCGTCCTTGGCGGCCTCTTCGGTGGCCATTGCG
CCGGCATTGGCGCTTTCGGCCATTACCACCTCCTCGACGGTGGCCGACGG
CGAGACGCGTGCCTCCTCCTCGGCTGGAGTATCCTCCATGGGCTGGTCGT
TGAGGGCCAAGACAGGCGGAGTTACAGCGGCGACCAAGGGCGAAGCCTGC
GAGTCATCGCCTGTCTCAGCAGGCGGCGTCTCAGCAGCGGAATCGGCAGC
GCCCAAAGGAGATTGCGGTGTGGTTGCAGCTGCCAGATCTTCCACAGCAG
GACTAGAAGCATCCTCAACCGGCGACTTCTCGACTGACTCCTGGGCTGCC
TCGGTCGCTTTGGAAGTGGTCAAGTCGTTCCTATTCTCGCTTTCTGCATT
CGGCTCGGCAGCCTGCTTTTCATCCGAAACCGACTTCTCGGCCGCCTCAG
TTTCAGTCTTTTCCGGTTGGCTCTTCTTGGTCTCGGCCTCTGGATCGTCC
TCAGATTTGGTCTTCGGTTTCGATTCGGAGGAAGCTATCTTTTCTTCAGC
GGGTTTTTCTGCTGATGGGGCATCGTCAGTCTCAGTAGAGTCGATATCGT
CCTGCTTTTCAGTTTTAATTGGTGCATGTTTTTTCTCCTCCTTTTCGTTT
TCTGCCTTGACTTTGACAGGCTCCTGGTTTTCCCCATCGGCAGGCGGTGT
AGATTTCTTGACAACTGCCTTGTCGCCTAACTGTGCCACCTTTCCGTCCG
GTTTATCAGACTCGACGACCTCTTCCTTCTTTACAATCTCTTCTTTTGGC
TCGATTGCCACCTTTTTGTCCTCCTCCCCTCTCTTTTCCTGAGCAACAAG
TTCTTTCTCAGCTTCTATGGATTTGCT
BO08560.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:26:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2890-PA | 1830 | PPP4R2r-RA | 968..1827 | 878..19 | 4300 | 100 | Minus |
CG2890-PB | 1830 | PPP4R2r-RB | 968..1827 | 878..19 | 4300 | 100 | Minus |
CG2890-PC | 1830 | PPP4R2r-RC | 968..1827 | 878..19 | 4300 | 100 | Minus |
CG2890-PA | 1830 | PPP4R2r-RA | 919..964 | 927..882 | 230 | 100 | Minus |
CG2890-PB | 1830 | PPP4R2r-RB | 919..964 | 927..882 | 230 | 100 | Minus |
CG2890-PC | 1830 | PPP4R2r-RC | 919..964 | 927..882 | 230 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:09:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PPP4R2r-RD | 2473 | CG2890-RD | 1126..2034 | 927..19 | 4500 | 99.8 | Minus |
PPP4R2r-RC | 2409 | CG2890-RC | 1062..1970 | 927..19 | 4500 | 99.8 | Minus |
PPP4R2r-RB | 2397 | CG2890-RB | 1050..1958 | 927..19 | 4500 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:08:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10480596..10481504 | 927..19 | 4500 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-12 12:08:57 has no hits.
BO08560.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:50:33 Download gff for
BO08560.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2890-PA | 919..1830 | 18..927 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:46:39 Download gff for
BO08560.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2890-PC | 919..1830 | 18..927 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:49:43 Download gff for
BO08560.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PPP4R2r-RB | 1050..1964 | 11..927 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:53:38 Download gff for
BO08560.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PPP4R2r-RB | 1050..1964 | 11..927 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:53:38 Download gff for
BO08560.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10480596..10481510 | 11..927 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:49:43 Download gff for
BO08560.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10374629..10375543 | 11..927 | 99 | | Minus |
BO08560.5prime Sequence
965 bp (871 high quality bases) assembled on 2006-01-06
> BO08560.5prime
GAAGTTATCAGTCGACATGGTCACCATGGAAAACAGCGACGAGATAATGC
AGATCCTAGAGCGCTTTACGGATCTTAAACAAAAGGAGATCCCAAAGGAG
CTGGAGGAGTACCTACAGTATGTGGCCAAGACCGGCGACACCATCTTCAA
GTGGTCCAGCCTGAAGTACTTGTTCCGCGAGAAGCTGCTCAGCGTGATCA
AGCACTTTAATGAGGATTCGCCGCGTTTGGAGGAGATTCCCAACTATCCG
AATGTGGACCCTTTCAACTACGAGACCATGAAGTCCTCGTTGCTGGAGCG
CTTGGACCTTTTCAATGCAGCTCCTTTTACCGTGCAGCGGTTGTGCGAGC
TACTAATCGATCCTCGGAAGCAGTACTCGCGCATCGATAAGTTTATGCGT
GCTTTGGAAAAGAATATTTTAGTGGTTAGCACAATCGATCCTGGACGCAA
GCGTACCGAAAGTGAGAATGGCGACTCGCTGGACTCAGTGGTCAACGGGG
ACCTCTCCATGGAGGTGAACATTGACATTGAAATGGAGAATAATAACGGT
AACGCCGATGAGGGCTCATCTCCCGGCGCCGGTTCGGCAGGTTGTGCCCA
GAAGGCAAGCTGCCCGCGTTCGGACGACAATGATCAGCCCAAGGCCAAGA
AGGCAAAACTGGAGATCGATGGTGAAGAGCGTTCGGAAGCGAGCGATGAA
ACGGACACAGAAGTGGCAACCAGGGTCAAAAATGAAAAGGATGAGAAGAA
TGACAACGATGAGACTGATTCGCCGCATGAGGCTGCCGAGATCGAGGAGC
CCGATGAAGAGGTGGATGAGGCTGATCAGGAGACCAAGACCACCAAGCAG
CCTGCTTACGGCAGTCAGAAGGAGGGCGAGCAGGAGGAAGTTTCCCATCA
TCTGCCGATGACGAGGCGGAGGACCCCATGGTGAGCAAATCATAGAAGCT
GAGAAAGAACTTGTT
BO08560.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:26:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2890-PA | 1830 | PPP4R2r-RA | 1..873 | 17..889 | 4365 | 100 | Plus |
CG2890-PB | 1830 | PPP4R2r-RB | 1..873 | 17..889 | 4365 | 100 | Plus |
CG2890-PC | 1830 | PPP4R2r-RC | 1..873 | 17..889 | 4365 | 100 | Plus |
CG2890-PA | 1830 | PPP4R2r-RA | 873..926 | 888..941 | 245 | 98.1 | Plus |
CG2890-PB | 1830 | PPP4R2r-RB | 873..926 | 888..941 | 245 | 98.1 | Plus |
CG2890-PC | 1830 | PPP4R2r-RC | 873..926 | 888..941 | 245 | 98.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:01:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PPP4R2r-RC | 2409 | CG2890-RC | 144..1094 | 17..965 | 4690 | 99.7 | Plus |
PPP4R2r-RB | 2397 | CG2890-RB | 132..1082 | 17..965 | 4690 | 99.7 | Plus |
PPP4R2r-RA | 2426 | CG2890-RA | 161..1111 | 17..965 | 4690 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:01:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10480082..10480628 | 421..965 | 2620 | 99.5 | Plus |
X | 23542271 | X | 10479501..10479717 | 17..233 | 1085 | 100 | Plus |
X | 23542271 | X | 10479835..10480024 | 233..422 | 950 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:01:37 has no hits.
BO08560.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:50:34 Download gff for
BO08560.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2890-PA | 1..951 | 17..965 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:46:40 Download gff for
BO08560.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2890-PC | 1..951 | 17..965 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:02:41 Download gff for
BO08560.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PPP4R2r-RA | 152..1111 | 7..965 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:40:15 Download gff for
BO08560.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PPP4R2r-RA | 152..1111 | 7..965 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:40:15 Download gff for
BO08560.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10479836..10480024 | 234..422 | 100 | -> | Plus |
X | 10479492..10479717 | 7..233 | 98 | -> | Plus |
X | 10480084..10480628 | 423..965 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:02:41 Download gff for
BO08560.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10373525..10373750 | 7..233 | 98 | -> | Plus |
arm_X | 10373869..10374057 | 234..422 | 100 | -> | Plus |
arm_X | 10374117..10374661 | 423..965 | 99 | | Plus |
BO08560.complete Sequence
1861 bp (1861 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631238
> BO08560.complete
GAAGTTATCAGTCGACATGGTCACCATGGAAAACAGCGACGAGATAATGC
AGATCCTAGAGCGCTTTACGGATCTTAAACAAAAGGAGATCCCAAAGGAG
CTGGAGGAGTACCTACAGTATGTGGCCAAGACCGGCGACACCATCTTCAA
GTGGTCCAGCCTGAAGTACTTGTTCCGCGAGAAGCTGCTCAGCGTGATCA
AGCACTTTAATGAGGATTCGCCGCGTTTGGAGGAGATTCCCAACTATCCG
AATGTGGACCCTTTCAACTACGAGACCATGAAGTCCTCGTTGCTGGAGCG
CTTGGACCTTTTCAATGCAGCTCCTTTTACCGTGCAGCGGTTGTGCGAGC
TACTAATCGATCCTCGGAAGCAGTACTCGCGCATCGATAAGTTTATGCGT
GCTTTGGAAAAGAATATTTTAGTGGTTAGCACAATCGATCCTGGACGCAA
GCGTACCGAAAGTGAGAATGGCGACTCGCTGGACTCAGTGGTCAACGGGG
ACCTCTCCATGGAGGTGAACATTGACATTGAAATGGAGAATAATAACGGT
AACGCCGATGAGGGCTCATCTCCCGGCGCCGGTTCGGCAGGTTGTGCCCA
GAAGGCAAGCTGCCCGCGTTCGGACGACAATGATCAGCCCAAGGCCAAGA
AGGCAAAACTGGAGATCGATGGTGAAGAGCGTTCGGAAGCGAGCGATGAA
ACGGACACAGAAGTGGCAACCAGGGTCAAAAATGAAAAGGATGAGAAGAA
TGACAACGATGAGACTGATTCGCCGCATGAGGCTGCCGAGATCGAGGAGC
CCGATGAAGAGGTGGATGAGGCTGATCAGGAGACCAAGACCACCAAGCAG
CCTGCTTACGGCAGTCAGAAGGAGGGCGAGCAGGAGGAAAGTTTCCCATC
ATCTGCCGATGACGAGGCGGAGGACCCAATGGTGAGCAAATCCATAGAAG
CTGAGAAAGAACTTGTTGCTCAGGAAAAGAAGAGGGAGGAGGACAAAAAG
GTGGCAATCGAGCCAAAAGAAGAGATTGTAAAGAAGGAAGAGGTCGTCGA
GTCTGATAAACCGGACGGAAAGGTGGCACAGTTAGGCGACAAGGCAGTTG
TCAAGAAATCTACACCGCCTGCCGATGGGGAAAACCAGGAGCCTGTCAAA
GTCAAGGCAGAAAACGAAAAGGAGGAGAAAAAACATGCACCAATTAAAAC
TGAAAAGCAGGACGATATCGACTCTACTGAGACTGACGATGCCCCATCAG
CAGAAAAACCCGCTGAAGAAAAGATAGCTTCCTCCGAATCGAAACCGAAG
ACCAAATCTGAGGACGATCCAGAGGCCGAGACCAAGAAGAGCCAACCGGA
AAAGACTGAAACTGAGGCGGCCGAGAAGTCGGTTTCGGATGAAAAGCAGG
CTGCCGAGCCGAATGCAGAAAGCGAGAATAGGAACGACTTGACCACTTCC
AAAGCGACCGAGGCAGCCCAGGAGTCAGTCGAGAAGTCGCCGGTTGAGGA
TGCTTCTAGTCCTGCTGTGGAAGATCTGGCAGCTGCAACCACACCGCAAT
CTCCTTTGGGCGCTGCCGATTCCGCTGCTGAGACGCCGCCTGCTGAGACA
GGCGATGACTCGCAGGCTTCGCCCTTGGTCGCCGCTGTAACTCCGCCTGT
CTTGGCCCTCAACGACCAGCCCATGGAGGATACTCCAGCCGAGGAGGAGG
CACGCGTCTCGCCGTCGGCCACCGTCGAGGAGGTGGTAATGGCCGAAAGC
GCCAATGCCGGCGCAATGGCCACCGAAGAGGCCGCCAAGGACGATCCGGC
CGCCATGGAGATCGATGACACCAGCCAGGAGGTGATGATGCAGGCAAGCT
TTCTAGACCAT
BO08560.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:07:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PPP4R2r-RC | 1830 | CG2890-PC | 1..1827 | 17..1843 | 9135 | 100 | Plus |
PPP4R2r-RB | 1830 | CG2890-PB | 1..1827 | 17..1843 | 9135 | 100 | Plus |
PPP4R2r-RA | 1830 | CG2890-PA | 1..1827 | 17..1843 | 9135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:07:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PPP4R2r-RC | 2409 | CG2890-RC | 144..1970 | 17..1843 | 9135 | 100 | Plus |
PPP4R2r-RB | 2397 | CG2890-RB | 132..1958 | 17..1843 | 9135 | 100 | Plus |
PPP4R2r-RA | 2426 | CG2890-RA | 161..1987 | 17..1843 | 9135 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:07:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10480082..10481504 | 421..1843 | 7115 | 100 | Plus |
X | 23542271 | X | 10479501..10479717 | 17..233 | 1085 | 100 | Plus |
X | 23542271 | X | 10479835..10480024 | 233..422 | 950 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:07:32 has no hits.
BO08560.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:00:10 Download gff for
BO08560.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PPP4R2r-RC | 1..1830 | 17..1844 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:18:24 Download gff for
BO08560.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PPP4R2r-RC | 140..1981 | 7..1851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:06:00 Download gff for
BO08560.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PPP4R2r-RA | 161..1987 | 17..1845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:00:10 Download gff for
BO08560.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PPP4R2r-RC | 140..1981 | 7..1851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:03:36 Download gff for
BO08560.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PPP4R2r-RA | 161..1987 | 17..1845 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:03:36 Download gff for
BO08560.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10479501..10479717 | 17..233 | 100 | -> | Plus |
X | 10479836..10480024 | 234..422 | 100 | -> | Plus |
X | 10480084..10481504 | 423..1845 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:06:00 Download gff for
BO08560.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10373534..10373750 | 17..233 | 100 | -> | Plus |
arm_X | 10373869..10374057 | 234..422 | 100 | -> | Plus |
arm_X | 10374117..10375537 | 423..1845 | 99 | | Plus |
BO08560.pep Sequence
Translation from 16 to 1861
> BO08560.pep
MVTMENSDEIMQILERFTDLKQKEIPKELEEYLQYVAKTGDTIFKWSSLK
YLFREKLLSVIKHFNEDSPRLEEIPNYPNVDPFNYETMKSSLLERLDLFN
AAPFTVQRLCELLIDPRKQYSRIDKFMRALEKNILVVSTIDPGRKRTESE
NGDSLDSVVNGDLSMEVNIDIEMENNNGNADEGSSPGAGSAGCAQKASCP
RSDDNDQPKAKKAKLEIDGEERSEASDETDTEVATRVKNEKDEKNDNDET
DSPHEAAEIEEPDEEVDEADQETKTTKQPAYGSQKEGEQEESFPSSADDE
AEDPMVSKSIEAEKELVAQEKKREEDKKVAIEPKEEIVKKEEVVESDKPD
GKVAQLGDKAVVKKSTPPADGENQEPVKVKAENEKEEKKHAPIKTEKQDD
IDSTETDDAPSAEKPAEEKIASSESKPKTKSEDDPEAETKKSQPEKTETE
AAEKSVSDEKQAAEPNAESENRNDLTTSKATEAAQESVEKSPVEDASSPA
VEDLAAATTPQSPLGAADSAAETPPAETGDDSQASPLVAAVTPPVLALND
QPMEDTPAEEEARVSPSATVEEVVMAESANAGAMATEEAAKDDPAAMEID
DTSQEVMMQASFLDH
BO08560.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:58:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PPP4R2r-PC | 609 | CG2890-PC | 1..609 | 1..609 | 3071 | 100 | Plus |
PPP4R2r-PB | 609 | CG2890-PB | 1..609 | 1..609 | 3071 | 100 | Plus |
PPP4R2r-PA | 609 | CG2890-PA | 1..609 | 1..609 | 3071 | 100 | Plus |
PPP4R2r-PD | 522 | CG2890-PD | 1..522 | 88..609 | 2616 | 100 | Plus |
Muc68D-PB | 1514 | CG6004-PB | 325..809 | 148..605 | 248 | 19.5 | Plus |