Clone Sequence Records
BO08561.3prime Sequence
957 bp (792 high quality bases) assembled on 2006-01-06
> BO08561.3prime
ATGGTCTAGAAAGCTTGCGTAGGGCTTCGAGTCCTTGGGCTTCTTCAGCT
GCACCTTGAGACGCTTGGTGCCCACCTGGAAGCCGTTCATCGCCTTTATG
GCCACCTGGGCCGAGTCCGGATTGTCGAAGGAGACAAACCCGAAGCACTT
CGACAGGCTCGTCTGTTTGTCGATGAACACCTTGGCCGAGATCACATTGC
CGAAGGGCAGGAACGTGGAGGCCAGATCCGTATCGGTGAACTCCTGCGGC
AGATGGTAGATGAAAAGGTTGCAGCCCTCGGGTCCTTCAATCTGCTTTCC
CGCTGCGGCGGCGGCTGCGGCGCTGAGGGCAACGCTGGCCAGCGGCGAAG
TGGACAATGCACTGGCGCTCCCGAATTGCGGCAGACCGGCGGCTGTTGAC
ATATATGCCGATGCCATTGGATTCGGATCGGACCAGAGCAGCGCAGCCGT
GTTGGTCAGTTGGGCGCTTCCAGGCGATGTGGCAGCGGCGGCTGCCGCGG
CGGCATTCGAGAGACTCGGCTGCGTCATGGCCGCAATGGCCGCTAGATTC
TGGACGGTCATCGGGGTCAAAAGTCCTGCGGCCGCCACAGCGCTGGTGTC
CGTCGCCGAGCTGCTCTGCTGGGCTCCCAGTCCTGTGAGGGCTTGCAACA
ACTGGTGCTGCAGTCCCACCGCCTGCAGCTGCTGCAGCAGTTGAATGGAG
GCCGGGGTAATGGCATCTGCGCCGAGAACCGGCGAAGGCTGCTGCGGCGG
ATTGGGCAGGATGGGCGTGGTCACGCTGGTGGCCGTTTGGCCCAGAGGTA
TGTTGATGTTGCTGGCCAGGTTCCAGAGATTGGCCTGAATTTGCTGAATC
TTCTTCTGCTCCTTCTCTTTTTGCGTATCGGCGAACTTGACGACCAGCGG
CGATGTGCAGCCCTCCATGATCTTTGTCTGGCTCANGGTCACTTTAATGG
CGGAAAT
BO08561.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:26:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31762-PB | 2433 | aret-RB | 1492..2430 | 957..19 | 4601 | 99.5 | Minus |
| CG31762-PA | 1815 | aret-RA | 874..1812 | 957..19 | 4601 | 99.5 | Minus |
| CG31762-PD | 1086 | aret-RD | 145..1083 | 957..19 | 4601 | 99.5 | Minus |
| CG31762-PC | 1851 | aret-RC | 874..1397 | 957..434 | 2526 | 99.2 | Minus |
| CG31762-PC | 1851 | aret-RC | 1433..1848 | 434..19 | 2080 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:04:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| aret-RK | 3510 | CG31762-RK | 1208..2146 | 957..19 | 4639 | 99.6 | Minus |
| aret-RJ | 2431 | CG31762-RJ | 1237..2175 | 957..19 | 4639 | 99.6 | Minus |
| aret-RI | 3019 | CG31762-RI | 932..1870 | 957..19 | 4639 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:04:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12298813..12299111 | 940..642 | 1454 | 99 | Minus |
| 2L | 23513712 | 2L | 12310680..12310947 | 286..19 | 1340 | 100 | Minus |
| 2L | 23513712 | 2L | 12299186..12299395 | 643..434 | 1050 | 100 | Minus |
| 2L | 23513712 | 2L | 12304446..12304596 | 434..284 | 755 | 100 | Minus |
| 2L | 23513712 | 2L | 12396291..12396524 | 286..53 | 450 | 79.5 | Minus |
Blast to na_te.dros performed on 2015-02-12 12:04:31 has no hits.
BO08561.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:50:35 Download gff for
BO08561.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aret-PB | 1492..2433 | 18..957 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:46:41 Download gff for
BO08561.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31762-PD | 145..1086 | 18..957 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:49:09 Download gff for
BO08561.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aret-RI | 932..1870 | 19..957 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:55:49 Download gff for
BO08561.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aret-RI | 932..1870 | 19..957 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:55:49 Download gff for
BO08561.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12298732..12298749 | 940..957 | 94 | -> | Minus |
| 2L | 12298814..12299111 | 642..939 | 98 | -> | Minus |
| 2L | 12299188..12299394 | 435..641 | 100 | -> | Minus |
| 2L | 12304446..12304595 | 285..434 | 100 | -> | Minus |
| 2L | 12310682..12310947 | 19..284 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:49:09 Download gff for
BO08561.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12298732..12298749 | 940..957 | 94 | -> | Minus |
| arm_2L | 12298814..12299111 | 642..939 | 98 | -> | Minus |
| arm_2L | 12299188..12299394 | 435..641 | 100 | -> | Minus |
| arm_2L | 12304446..12304595 | 285..434 | 100 | -> | Minus |
| arm_2L | 12310682..12310947 | 19..284 | 100 | | Minus |
BO08561.5prime Sequence
920 bp (821 high quality bases) assembled on 2006-01-06
> BO08561.5prime
GAAGTTATCAGTCGACATGTTCACCAGCCGCGCTTCGTTTTTGGCCAATC
GCCGCATGATTTTCGATTTCTCCGAGAAGAACAACGATATCTACTTGGAT
GCTTTTGGTATGAGTGATAAGAGCAGCAGTGCAACGAACAGCCTGCCGAA
TAGTCCCATACACAGCAACAACAATAATCCATCGCTGCTGAACAACAACA
ACAATAACAGCAACGGCACCAGCAGCAACAACAGCTTAAACGTTGGCAAC
AACAACAGCAATCCGAGCTTGGGCGGCAGCAACAGCAACGCACTGGTTTC
CGTAGGCAGCAACGGTATAATGTCCGCCGCCGGTTTGGTCAACAACAATA
ACAATCCGTGCAGCGCCAACCGCAATGTGGTCGCCATGGTCGACGATGAC
GCCTGCTTCCGTCTGGATACGGACGCCACGGTGACGTACGGCGAGAAGGA
ACCGGATCCGGACAACATCAAGATGTTCGTCGGCCAGGTGCCCAAGTCGA
TGGACGAGTCGCAGCTGCGCGAGATGTTCGAGGAGTACGGCGCCGTGCAC
TCGATCAACGTTCTGCGGGACAAGGCTACCGGAATTAGCAAGGGTTGCTG
CTTTGTGACATTTTATACGAGACACGCCGCCCTGAAAGCCCAGGATGCTT
TGCATAATGTTAAGACGCTAAATGGGATGTACCATCCCATTCAAATGAAG
CCCGCCGATAGCGAGAATCGCAATGAACGCAAACTCTTTGTGGGTATGCT
AAACAAGAAGCTGAACGAGAACGACGTTCGCAAGCTATTTGAAGTCCACG
GAGCCATCGAGGAGTGCACCGTCCCTCGGGACCAAACGGACAGAGCAAGG
GTTGTGCCTTCGTCACATTCGCCACCAAGCACGCTGCCATTTCGGCCATT
AAAGTGACCCTGAGCCAGAA
BO08561.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:26:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31762-PA | 1815 | aret-RA | 1..820 | 17..836 | 4075 | 99.8 | Plus |
| CG31762-PC | 1851 | aret-RC | 1..820 | 17..836 | 4075 | 99.8 | Plus |
| CG31762-PB | 2433 | aret-RB | 702..1438 | 100..836 | 3660 | 99.8 | Plus |
| CG31762-PA | 1815 | aret-RA | 819..905 | 834..920 | 435 | 100 | Plus |
| CG31762-PC | 1851 | aret-RC | 819..905 | 834..920 | 435 | 100 | Plus |
| CG31762-PB | 2433 | aret-RB | 1437..1523 | 834..920 | 435 | 100 | Plus |
| CG31762-PD | 1086 | aret-RD | 90..176 | 834..920 | 435 | 100 | Plus |
| CG31762-PD | 1086 | aret-RD | 1..91 | 746..836 | 430 | 98.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:03:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| aret-RF | 3342 | CG31762-RF | 334..1238 | 17..920 | 4485 | 99.8 | Plus |
| aret-RE | 2302 | CG31762-RE | 334..1238 | 17..920 | 4485 | 99.8 | Plus |
| aret-RA | 2651 | CG31762-RA | 334..1238 | 17..920 | 4485 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:03:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12271591..12272086 | 100..595 | 2480 | 100 | Plus |
| 2L | 23513712 | 2L | 12298567..12298749 | 725..906 | 850 | 98.9 | Plus |
| 2L | 23513712 | 2L | 12278836..12278919 | 593..676 | 420 | 100 | Plus |
| 2L | 23513712 | 2L | 12271265..12271347 | 17..99 | 415 | 100 | Plus |
| 2L | 23513712 | 2L | 12282513..12282562 | 676..725 | 250 | 100 | Plus |
| 2L | 23513712 | 2L | 12385632..12385718 | 796..881 | 205 | 85.1 | Plus |
| 2L | 23513712 | 2L | 12358120..12358243 | 452..575 | 185 | 76.6 | Plus |
Blast to na_te.dros performed 2015-02-11 13:03:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2540 | 137..369 | 256 | 60.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6729..6919 | 191..375 | 239 | 60.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6738..6899 | 122..289 | 239 | 64.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2335..2514 | 113..289 | 235 | 62.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6848 | 163..289 | 231 | 68 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6732..6893 | 149..313 | 222 | 63.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6780..6946 | 122..288 | 215 | 63.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2365..2630 | 119..375 | 207 | 58.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2394 | 202..289 | 197 | 69.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6886 | 218..375 | 173 | 61.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2452 | 215..374 | 168 | 61.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2474 | 206..375 | 167 | 57.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1615 | 163..262 | 162 | 66.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1081..1154 | 162..235 | 153 | 70.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1142 | 209..289 | 143 | 65.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2463..2532 | 163..235 | 141 | 69.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1496..1584 | 205..289 | 130 | 62.9 | Plus |
| BS | 5142 | BS BS 5142bp | 2014..2104 | 162..261 | 128 | 64 | Plus |
BO08561.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:50:36 Download gff for
BO08561.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aret-PA | 1..903 | 17..918 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:46:42 Download gff for
BO08561.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31762-PC | 1..903 | 17..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:28:45 Download gff for
BO08561.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aret-RA | 334..1238 | 17..920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:28:01 Download gff for
BO08561.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aret-RA | 334..1238 | 17..920 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:28:01 Download gff for
BO08561.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12298568..12298749 | 726..906 | 98 | -> | Plus |
| 2L | 12271265..12271347 | 17..99 | 100 | -> | Plus |
| 2L | 12271591..12272084 | 100..593 | 100 | -> | Plus |
| 2L | 12278837..12278919 | 594..676 | 100 | -> | Plus |
| 2L | 12282514..12282562 | 677..725 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:28:45 Download gff for
BO08561.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12271265..12271347 | 17..99 | 100 | -> | Plus |
| arm_2L | 12271591..12272084 | 100..593 | 100 | -> | Plus |
| arm_2L | 12278837..12278919 | 594..676 | 100 | -> | Plus |
| arm_2L | 12282514..12282562 | 677..725 | 100 | -> | Plus |
| arm_2L | 12298568..12298749 | 726..906 | 98 | -> | Plus |
BO08561.complete Sequence
1846 bp (1846 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631239
> BO08561.complete
GAAGTTATCAGTCGACATGTTCACCAGCCGCGCTTCGTTTTTGGCCAATC
GCCGCATGATTTTCGATTTCTCCGAGAAGAACAACGATATCTACTTGGAT
GCTTTTGGTATGAGTGATAAGAGCAGCAGTGCAACGAACAGCCTGCCGAA
TAGTCCCATACACAGCAACAACAATAATCCATCGCTGCTGAACAACAACA
ACAATAACAGCAACGGCACCAGCAGCAACAACAGCTTAAACGTTGGCAAC
AACAACAGCAATCCGAGCTTGGGCGGCAGCAACAGCAACGCACTGGTTTC
CGTAGGCAGCAACGGTATAATGTCCGCCGCCGGTTTGGTCAACAACAATA
ACAATCCGTGCAGCGCCAACCGCAATGTGGTCGCCATGGTCGACGATGAC
GCCTGCTTCCGTCTGGATACGGACGCCACGGTGACGTACGGCGAGAAGGA
ACCGGATCCGGACAACATCAAGATGTTCGTCGGCCAGGTGCCCAAGTCGA
TGGACGAGTCGCAGCTGCGCGAGATGTTCGAGGAGTACGGCGCCGTGCAC
TCGATCAACGTTCTGCGGGACAAGGCTACCGGAATTAGCAAGGGTTGCTG
CTTTGTGACATTTTATACGAGACACGCCGCCCTGAAAGCCCAGGATGCTT
TGCATAATGTTAAGACGCTAAATGGGATGTACCATCCCATTCAAATGAAG
CCCGCCGATAGCGAGAATCGCAATGAACGCAAACTCTTTGTGGGTATGCT
AAACAAGAAGCTGAACGAGAACGACGTTCGCAAGCTATTTGAAGTCCACG
GAGCCATCGAGGAGTGCACCGTCCTTCGGGACCAAAACGGACAGAGCAAG
GGTTGTGCCTTCGTCACATTCGCCACCAAGCACGCTGCCATTTCGGCCAT
TAAAGTGACCCTGAGCCAGAACAAGATCATGGAGGGCTGCACATCGCCGC
TGGTCGTCAAGTTCGCCGATACGCAAAAAGAGAAGGAGCAGAAGAAGATT
CAGCAAATTCAGGCCAATCTCTGGAACCTGGCCAGCAACATCAACATACC
TCTGGGCCAAACGGCCACCAGCGTGACCACGCCCATCCTGCCCAATCCGC
CGCAGCAGCCTTCGCCGGTTCTCGGCGCAGATGCCATTACCCCGGCCTCC
ATTCAACTGCTGCAGCAGCTGCAGGCGGTGGGACTGCAGCACCAGTTGTT
GCAAGCCCTCACAGGACTGGGAGCCCAGCAGAGCAGCTCGGCGACGGACA
CCAGCGCTGTGGCGGCCGCAGGACTTTTGACCCCGATGACCGTCCAGAAT
CTAGCGGCCATTGCGGCCATGACGCAGCCGAGTCTCTCGAATGCCGCCGC
GGCAGCCGCCGCTGCCACATCGCCTGGAAGCGCCCAACTGACCAACACGG
CTGCGCTGCTCTGGTCCGATCCGAATCCAATGGCATCGGCATATATGTCA
ACAGCCGCCGGTCTGCCGCAATTCGGGAGCGCCAGTGCATTGTCCACTTC
GCCGCTGGCCAGCGTTGCCCTCAGCGCCGCAGCCGCCGCCGCAGCGGGAA
AGCAGATTGAAGGACCCGAGGGCTGCAACCTTTTCATCTACCATCTGCCG
CAGGAGTTCACCGATACGGATCTGGCCTCCACGTTCCTGCCCTTCGGCAA
TGTGATCTCGGCCAAGGTGTTCATCGACAAACAGACGAGCCTGTCGAAGT
GCTTCGGGTTTGTCTCCTTCGACAATCCGGACTCGGCCCAGGTGGCCATA
AAGGCGATGAACGGCTTCCAGGTGGGCACCAAGCGTCTCAAGGTGCAGCT
GAAGAAGCCCAAGGACTCGAAGCCCTACGCAAGCTTTCTAGACCAT
BO08561.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:31:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| aret-RE | 1815 | CG31762-PE | 1..1812 | 17..1828 | 9060 | 100 | Plus |
| aret-RA | 1815 | CG31762-PA | 1..1812 | 17..1828 | 9060 | 100 | Plus |
| aret-RG | 2433 | CG31762-PG | 702..2430 | 100..1828 | 8645 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:31:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| aret-RE | 2302 | CG31762-RE | 334..2145 | 17..1828 | 9060 | 100 | Plus |
| aret-RA | 2651 | CG31762-RA | 334..2145 | 17..1828 | 9060 | 100 | Plus |
| aret-RI | 3019 | CG31762-RI | 141..1870 | 99..1828 | 8650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:31:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12271591..12272086 | 100..595 | 2480 | 100 | Plus |
| 2L | 23513712 | 2L | 12298813..12299111 | 907..1205 | 1495 | 100 | Plus |
| 2L | 23513712 | 2L | 12310680..12310947 | 1561..1828 | 1340 | 100 | Plus |
| 2L | 23513712 | 2L | 12299186..12299395 | 1204..1413 | 1050 | 100 | Plus |
| 2L | 23513712 | 2L | 12298567..12298749 | 725..907 | 915 | 100 | Plus |
| 2L | 23513712 | 2L | 12304446..12304596 | 1413..1563 | 755 | 100 | Plus |
| 2L | 23513712 | 2L | 12396291..12396524 | 1561..1794 | 450 | 79.5 | Plus |
| 2L | 23513712 | 2L | 12278836..12278919 | 593..676 | 420 | 100 | Plus |
| 2L | 23513712 | 2L | 12271265..12271347 | 17..99 | 415 | 100 | Plus |
| 2L | 23513712 | 2L | 12282513..12282562 | 676..725 | 250 | 100 | Plus |
| 2L | 23513712 | 2L | 12385632..12385718 | 796..882 | 240 | 85.1 | Plus |
| 2L | 23513712 | 2L | 12358120..12358243 | 452..575 | 185 | 76.6 | Plus |
Blast to na_te.dros performed 2014-11-28 08:31:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2540 | 137..369 | 256 | 60.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6729..6919 | 191..375 | 239 | 60.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6738..6899 | 122..289 | 239 | 64.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2335..2514 | 113..289 | 235 | 62.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6848 | 163..289 | 231 | 68 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6732..6893 | 149..313 | 222 | 63.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6780..6946 | 122..288 | 215 | 63.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2365..2630 | 119..375 | 207 | 58.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2394 | 202..289 | 197 | 69.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6886 | 218..375 | 173 | 61.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2452 | 215..374 | 168 | 61.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2474 | 206..375 | 167 | 57.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1615 | 163..262 | 162 | 66.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1081..1154 | 162..235 | 153 | 70.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1142 | 209..289 | 143 | 65.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2463..2532 | 163..235 | 141 | 69.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1496..1584 | 205..289 | 130 | 62.9 | Plus |
| BS | 5142 | BS BS 5142bp | 2014..2104 | 162..261 | 128 | 64 | Plus |
BO08561.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:00:11 Download gff for
BO08561.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aret-RA | 1..1815 | 17..1829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:54:37 Download gff for
BO08561.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aret-RA | 335..2141 | 22..1830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:40 Download gff for
BO08561.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aret-RA | 339..2145 | 22..1830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:00:12 Download gff for
BO08561.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aret-RA | 330..2141 | 17..1828 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:19:49 Download gff for
BO08561.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aret-RA | 339..2145 | 22..1830 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:19:49 Download gff for
BO08561.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12271270..12271347 | 22..99 | 100 | -> | Plus |
| 2L | 12271591..12272084 | 100..593 | 100 | -> | Plus |
| 2L | 12278837..12278919 | 594..676 | 100 | -> | Plus |
| 2L | 12282514..12282562 | 677..725 | 100 | -> | Plus |
| 2L | 12298568..12298749 | 726..907 | 100 | -> | Plus |
| 2L | 12298814..12299111 | 908..1205 | 100 | -> | Plus |
| 2L | 12299188..12299394 | 1206..1412 | 100 | -> | Plus |
| 2L | 12304446..12304595 | 1413..1562 | 100 | -> | Plus |
| 2L | 12310682..12310947 | 1563..1830 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:40 Download gff for
BO08561.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12271270..12271347 | 22..99 | 100 | -> | Plus |
| arm_2L | 12271591..12272084 | 100..593 | 100 | -> | Plus |
| arm_2L | 12278837..12278919 | 594..676 | 100 | -> | Plus |
| arm_2L | 12282514..12282562 | 677..725 | 100 | -> | Plus |
| arm_2L | 12298568..12298749 | 726..907 | 100 | -> | Plus |
| arm_2L | 12298814..12299111 | 908..1205 | 100 | -> | Plus |
| arm_2L | 12299188..12299394 | 1206..1412 | 100 | -> | Plus |
| arm_2L | 12304446..12304595 | 1413..1562 | 100 | -> | Plus |
| arm_2L | 12310682..12310947 | 1563..1830 | 99 | | Plus |
BO08561.pep Sequence
Translation from 16 to 1846
> BO08561.pep
MFTSRASFLANRRMIFDFSEKNNDIYLDAFGMSDKSSSATNSLPNSPIHS
NNNNPSLLNNNNNNSNGTSSNNSLNVGNNNSNPSLGGSNSNALVSVGSNG
IMSAAGLVNNNNNPCSANRNVVAMVDDDACFRLDTDATVTYGEKEPDPDN
IKMFVGQVPKSMDESQLREMFEEYGAVHSINVLRDKATGISKGCCFVTFY
TRHAALKAQDALHNVKTLNGMYHPIQMKPADSENRNERKLFVGMLNKKLN
ENDVRKLFEVHGAIEECTVLRDQNGQSKGCAFVTFATKHAAISAIKVTLS
QNKIMEGCTSPLVVKFADTQKEKEQKKIQQIQANLWNLASNINIPLGQTA
TSVTTPILPNPPQQPSPVLGADAITPASIQLLQQLQAVGLQHQLLQALTG
LGAQQSSSATDTSAVAAAGLLTPMTVQNLAAIAAMTQPSLSNAAAAAAAA
TSPGSAQLTNTAALLWSDPNPMASAYMSTAAGLPQFGSASALSTSPLASV
ALSAAAAAAAGKQIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAK
VFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLKKPKD
SKPYASFLDH
BO08561.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:58:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| aret-PE | 604 | CG31762-PE | 1..604 | 1..604 | 3073 | 100 | Plus |
| aret-PA | 604 | CG31762-PA | 1..604 | 1..604 | 3073 | 100 | Plus |
| aret-PF | 620 | CG31762-PF | 1..620 | 1..604 | 3033 | 97.3 | Plus |
| aret-PG | 810 | CG31762-PG | 235..810 | 29..604 | 2930 | 100 | Plus |
| aret-PB | 810 | CG31762-PB | 235..810 | 29..604 | 2930 | 100 | Plus |
