Clone BO08562 Report

Search the DGRC for BO08562

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:85
Well:62
Vector:pDNR-Dual
Associated Gene/TranscriptCG5091-RA
Protein status:BO08562.pep: validated full length
Sequenced Size:1459

Clone Sequence Records

BO08562.3prime Sequence

862 bp (810 high quality bases) assembled on 2006-01-06

> BO08562.3prime
ATGGTCTAGAAAGCTTGCACTTAACTTGCTGCTAAATTGTTGAACATTTC
CCCACAAGAAAAACAAGAAGAAGTGTCCACAGCTTGTAACCGAAATAATA
AGGGGCCAAAGATCTGGATACTTTGTAGGTGCCGGAACGGTCAGAGAAGC
AACCACAACACTGATCATCAGAATCTGCGATATATTTGCAATGTACTTCA
GTGGATATTCGTTGCTGAGCTTCGACTTTGAATCAAAACATTTGAATATC
AAATGAAAAGCCACAGTGGCCACTACGGCGGGCACCAACAATTCATCTCT
TGCTAGAAGAGGCAACATGCTGAATACGGTAACTTCCAGAAATAAAATCA
TTTCGTCGGGCCAGCACTTAAGTAGGAAAAGTGCTGGTAAAGCAGTCAGC
AAAATGGTCTTCTCGTGCACTTGAAATGAAAACAAGAAGAATGCCAGGCT
CGTGTTGAAAAGCGCTAATAGAAATCCGACATTAGTTCGCCTTCGAAAGA
GTAGTACATTTGTTGGCAAAGATGCAATTAACGTGCATGCAATGCACACA
AGGGCCATTTGGTCATTGCTGATATGCTTCTTTAGTTTCCAAACTACGTT
GACGGCACACCAAACATTGGCCACCTTGTCCTCAAAAACTCCTCGGGCGA
CAGGAAACAGGCGATGGAGTACTTGAAGTACGGCCTGCAGAGATCCCAAC
CAAGGAACCCATAAAATAGCAAATGTTCCTAAGACAACGGCTGCTATCCG
TGAGATTTCAGCGATAAAAGAAGCAAAGCTTTTTTGGCTTACACATTCAC
CCAGAAGGAACGCAAAGAACGGCAAGCTGTGATACAGCTCCATTTGCTTA
TAATTAAGGGCT

BO08562.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:26:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG5091-PA 1428 CG5091-RA 582..1425 862..19 4220 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:53:28
Subject Length Description Subject Range Query Range Score Percent Strand
gny-RB 1521 CG5091-RB 628..1471 862..19 4220 100 Minus
gny-RA 2557 CG5091-RA 628..1471 862..19 4220 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:53:20
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10381377..10381778 420..19 2010 100 Minus
2L 23513712 2L 10380911..10381111 780..580 1005 100 Minus
2L 23513712 2L 10381163..10381324 580..419 810 100 Minus
2L 23513712 2L 10380730..10380813 862..779 420 100 Minus
Blast to na_te.dros performed on 2015-02-10 16:53:24 has no hits.

BO08562.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:50:36 Download gff for BO08562.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5091-PA 582..1428 18..862 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:46:44 Download gff for BO08562.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5091-PA 582..1428 18..862 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:25:46 Download gff for BO08562.3prime
Subject Subject Range Query Range Percent Splice Strand
gny-RA 628..1480 7..862 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:01:50 Download gff for BO08562.3prime
Subject Subject Range Query Range Percent Splice Strand
gny-RA 628..1480 7..862 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:01:50 Download gff for BO08562.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10380730..10380813 779..862 100 -> Minus
2L 10380913..10381110 581..778 100 -> Minus
2L 10381163..10381322 421..580 100 -> Minus
2L 10381377..10381787 7..420 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:25:46 Download gff for BO08562.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10380730..10380813 779..862 100 -> Minus
arm_2L 10380913..10381110 581..778 100 -> Minus
arm_2L 10381163..10381322 421..580 100 -> Minus
arm_2L 10381377..10381787 7..420 99   Minus

BO08562.5prime Sequence

876 bp (826 high quality bases) assembled on 2006-01-06

> BO08562.5prime
GAAGTTATCAGTCGACATGAGATCCGAAATTTTGGCAAGCGCCTTTTTGG
GCCTGGCGGTTAGGTCGATTATCTCGCTGTACTCCTACTCCGGCTTCGAT
TCCCCGCCGATGCATGGCGACTACGAGGCCCAGCGCCACTGGCAAGAGAT
CACGGTCAATCTGGCAGTGGGGGAATGGTACACAAACAGCTCCAACAACG
ATCTTCAGTACTGGGGCCTGGATTATCCGCCTCTGACGGCCTACCACAGC
TATTTGGTGGGTCGCATAGGAGCATCCATTGACCCCCGCTTCGTCGAGCT
GCACAAGAGCAGGGGATTCGAGTCGAAGGAGCACAAACGCTTCATGCGCG
CAACAGTTGTTTCTGCTGACGTGCTCATCTATTTGCCGGCAATGTTGTTG
CTGGCCTATTCCCTAGATAAAGCCTTTCGAAGCGATGATAAATTGTTCCT
ATTCACGCTGGTGGCCGCGTATCCCGGACAAACACTCATCGACAATGGAC
ACTTTCAGTATAATAATATATCACTGGGCTTTGCCGCCGTGGCAATTGCC
GCAATCTTGCGAAGAAGATTCTACGCGGCTGCATTTTTCTTCACTTTAGC
CCTTAATTATAAGCAAATGGAGCTGTATCACAGCTTGCCGTTCTTTGCGT
TCCTTCTGGGTGAATGTGTAAGCCAAAAAAGCTTTGCTTCTTTTATCGCT
GAAATCTCACGGATAGCAGCCGTTGTCTTAGGAACATTTGCTATTTTATG
GGTTCCTTGGTTGGGATCTCTGCAGGCCGTACTTCAAGTACTCCATCGCC
TGTTTCCTGTCGCCCGAGGAGTTTTTGAGGACAAGGTGGGCAATGTTTGG
TGTGCCGTCAACGTAGTTTGGGAACT

BO08562.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:26:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG5091-PA 1428 CG5091-RA 1..855 17..871 4250 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:17:34
Subject Length Description Subject Range Query Range Score Percent Strand
gny-RB 1521 CG5091-RB 47..906 17..876 4270 99.8 Plus
gny-RA 2557 CG5091-RA 47..906 17..876 4270 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:17:30
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10380149..10380813 17..681 3325 100 Plus
2L 23513712 2L 10380911..10381107 680..876 955 99 Plus
Blast to na_te.dros performed on 2015-02-10 23:17:32 has no hits.

BO08562.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:50:37 Download gff for BO08562.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5091-PA 1..860 17..876 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:46:45 Download gff for BO08562.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5091-PA 1..860 17..876 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:30:31 Download gff for BO08562.5prime
Subject Subject Range Query Range Percent Splice Strand
gny-RA 47..906 17..876 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:32:03 Download gff for BO08562.5prime
Subject Subject Range Query Range Percent Splice Strand
gny-RA 47..906 17..876 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:32:03 Download gff for BO08562.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10380913..10381107 682..876 98   Plus
2L 10380149..10380813 17..681 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:30:31 Download gff for BO08562.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10380149..10380813 17..681 100 -> Plus
arm_2L 10380913..10381107 682..876 98   Plus

BO08562.complete Sequence

1459 bp (1459 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ631240

> BO08562.complete
GAAGTTATCAGTCGACATGAGATCCGAAATTTTGGCAAGCGCCTTTTTGG
GCCTGGCGGTTAGGTCGATTATCTCGCTGTACTCCTACTCCGGCTTCGAT
TCCCCGCCGATGCATGGCGACTACGAGGCCCAGCGCCACTGGCAAGAGAT
CACGGTCAATCTGGCAGTGGGGGAATGGTACACAAACAGCTCCAACAACG
ATCTTCAGTACTGGGGCCTGGATTATCCGCCTCTGACGGCCTACCACAGC
TATTTGGTGGGTCGCATAGGAGCATCCATTGACCCCCGCTTCGTCGAGCT
GCACAAGAGCAGGGGATTCGAGTCGAAGGAGCACAAACGCTTCATGCGCG
CAACAGTTGTTTCTGCTGACGTGCTCATCTATTTGCCGGCAATGTTGTTG
CTGGCCTATTCCCTAGATAAAGCCTTTCGAAGCGATGATAAATTGTTCCT
ATTCACGCTGGTGGCCGCGTATCCCGGACAAACACTCATCGACAATGGAC
ACTTTCAGTATAATAATATATCACTGGGCTTTGCCGCCGTGGCAATTGCC
GCAATCTTGCGAAGAAGATTCTACGCGGCTGCATTTTTCTTCACTTTAGC
CCTTAATTATAAGCAAATGGAGCTGTATCACAGCTTGCCGTTCTTTGCGT
TCCTTCTGGGTGAATGTGTAAGCCAAAAAAGCTTTGCTTCTTTTATCGCT
GAAATCTCACGGATAGCAGCCGTTGTCTTAGGAACATTTGCTATTTTATG
GGTTCCTTGGTTGGGATCTCTGCAGGCCGTACTTCAAGTACTCCATCGCC
TGTTTCCTGTCGCCCGAGGAGTTTTTGAGGACAAGGTGGCCAATGTTTGG
TGTGCCGTCAACGTAGTTTGGAAACTAAAGAAGCATATCAGCAATGACCA
AATGGCCCTTGTGTGCATTGCATGCACGTTAATTGCATCTTTGCCAACAA
ATGTACTACTCTTTCGAAGGCGAACTAATGTCGGATTTCTATTAGCGCTT
TTCAACACGAGCCTGGCATTCTTCTTGTTTTCATTTCAAGTGCACGAGAA
GACCATTTTGCTGACTGCTTTACCAGCACTTTTCCTACTTAAGTGCTGGC
CCGACGAAATGATTTTATTTCTGGAAGTTACCGTATTCAGCATGTTGCCT
CTTCTAGCAAGAGATGAATTGTTGGTGCCCGCCGTAGTGGCCACTGTGGC
TTTTCATTTGATATTCAAATGTTTTGATTCAAAGTCGAAGCTCAGCAACG
AATATCCACTGAAGTACATTGCAAATATATCGCAGATTCTGATGATCAGT
GTTGTGGTTGCTTCTCTGACCGTTCCGGCACCTACAAAGTATCCAGATCT
TTGGCCCCTTATTATTTCGGTTACAAGCTGTGGACACTTCTTCTTGTTTT
TCTTGTGGGGAAATGTTCAACAATTTAGCAGCAAGTTAAGTGCAAGCTTT
CTAGACCAT

BO08562.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:54:28
Subject Length Description Subject Range Query Range Score Percent Strand
gny-RB 1428 CG5091-PB 1..1425 17..1441 7125 100 Plus
gny-RA 1428 CG5091-PA 1..1425 17..1441 7125 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:54:29
Subject Length Description Subject Range Query Range Score Percent Strand
gny-RB 1521 CG5091-RB 47..1471 17..1441 7125 100 Plus
gny-RA 2557 CG5091-RA 47..1471 17..1441 7125 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:54:26
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10380149..10380813 17..681 3325 100 Plus
2L 23513712 2L 10381377..10381778 1040..1441 2010 100 Plus
2L 23513712 2L 10380911..10381111 680..880 1005 100 Plus
2L 23513712 2L 10381163..10381324 880..1041 810 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:54:27 has no hits.

BO08562.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:11:37 Download gff for BO08562.complete
Subject Subject Range Query Range Percent Splice Strand
CG5091-RA 1..1428 17..1442 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:32:26 Download gff for BO08562.complete
Subject Subject Range Query Range Percent Splice Strand
CG5091-RA 32..1465 17..1453 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:06:39 Download gff for BO08562.complete
Subject Subject Range Query Range Percent Splice Strand
gny-RA 47..1471 17..1443 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:11:37 Download gff for BO08562.complete
Subject Subject Range Query Range Percent Splice Strand
CG5091-RA 32..1465 17..1453 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:07:04 Download gff for BO08562.complete
Subject Subject Range Query Range Percent Splice Strand
gny-RA 47..1471 17..1443 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:07:04 Download gff for BO08562.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10380149..10380813 17..681 100 -> Plus
2L 10380913..10381110 682..879 100 -> Plus
2L 10381163..10381322 880..1039 100 -> Plus
2L 10381377..10381778 1040..1443 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:06:39 Download gff for BO08562.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10380149..10380813 17..681 100 -> Plus
arm_2L 10380913..10381110 682..879 100 -> Plus
arm_2L 10381163..10381322 880..1039 100 -> Plus
arm_2L 10381377..10381778 1040..1443 99   Plus

BO08562.pep Sequence

Translation from 16 to 1459

> BO08562.pep
MRSEILASAFLGLAVRSIISLYSYSGFDSPPMHGDYEAQRHWQEITVNLA
VGEWYTNSSNNDLQYWGLDYPPLTAYHSYLVGRIGASIDPRFVELHKSRG
FESKEHKRFMRATVVSADVLIYLPAMLLLAYSLDKAFRSDDKLFLFTLVA
AYPGQTLIDNGHFQYNNISLGFAAVAIAAILRRRFYAAAFFFTLALNYKQ
MELYHSLPFFAFLLGECVSQKSFASFIAEISRIAAVVLGTFAILWVPWLG
SLQAVLQVLHRLFPVARGVFEDKVANVWCAVNVVWKLKKHISNDQMALVC
IACTLIASLPTNVLLFRRRTNVGFLLALFNTSLAFFLFSFQVHEKTILLT
ALPALFLLKCWPDEMILFLEVTVFSMLPLLARDELLVPAVVATVAFHLIF
KCFDSKSKLSNEYPLKYIANISQILMISVVVASLTVPAPTKYPDLWPLII
SVTSCGHFFLFFLWGNVQQFSSKLSASFLDH

BO08562.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:14:00
Subject Length Description Subject Range Query Range Score Percent Strand
gny-PB 475 CG5091-PB 1..475 1..475 2445 100 Plus
gny-PA 475 CG5091-PA 1..475 1..475 2445 100 Plus
xit-PA 511 CG4542-PA 21..503 30..477 370 28.3 Plus