Clone Sequence Records
BO08562.3prime Sequence
862 bp (810 high quality bases) assembled on 2006-01-06
> BO08562.3prime
ATGGTCTAGAAAGCTTGCACTTAACTTGCTGCTAAATTGTTGAACATTTC
CCCACAAGAAAAACAAGAAGAAGTGTCCACAGCTTGTAACCGAAATAATA
AGGGGCCAAAGATCTGGATACTTTGTAGGTGCCGGAACGGTCAGAGAAGC
AACCACAACACTGATCATCAGAATCTGCGATATATTTGCAATGTACTTCA
GTGGATATTCGTTGCTGAGCTTCGACTTTGAATCAAAACATTTGAATATC
AAATGAAAAGCCACAGTGGCCACTACGGCGGGCACCAACAATTCATCTCT
TGCTAGAAGAGGCAACATGCTGAATACGGTAACTTCCAGAAATAAAATCA
TTTCGTCGGGCCAGCACTTAAGTAGGAAAAGTGCTGGTAAAGCAGTCAGC
AAAATGGTCTTCTCGTGCACTTGAAATGAAAACAAGAAGAATGCCAGGCT
CGTGTTGAAAAGCGCTAATAGAAATCCGACATTAGTTCGCCTTCGAAAGA
GTAGTACATTTGTTGGCAAAGATGCAATTAACGTGCATGCAATGCACACA
AGGGCCATTTGGTCATTGCTGATATGCTTCTTTAGTTTCCAAACTACGTT
GACGGCACACCAAACATTGGCCACCTTGTCCTCAAAAACTCCTCGGGCGA
CAGGAAACAGGCGATGGAGTACTTGAAGTACGGCCTGCAGAGATCCCAAC
CAAGGAACCCATAAAATAGCAAATGTTCCTAAGACAACGGCTGCTATCCG
TGAGATTTCAGCGATAAAAGAAGCAAAGCTTTTTTGGCTTACACATTCAC
CCAGAAGGAACGCAAAGAACGGCAAGCTGTGATACAGCTCCATTTGCTTA
TAATTAAGGGCT
BO08562.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:26:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5091-PA | 1428 | CG5091-RA | 582..1425 | 862..19 | 4220 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:53:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gny-RB | 1521 | CG5091-RB | 628..1471 | 862..19 | 4220 | 100 | Minus |
gny-RA | 2557 | CG5091-RA | 628..1471 | 862..19 | 4220 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:53:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10381377..10381778 | 420..19 | 2010 | 100 | Minus |
2L | 23513712 | 2L | 10380911..10381111 | 780..580 | 1005 | 100 | Minus |
2L | 23513712 | 2L | 10381163..10381324 | 580..419 | 810 | 100 | Minus |
2L | 23513712 | 2L | 10380730..10380813 | 862..779 | 420 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:53:24 has no hits.
BO08562.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:50:36 Download gff for
BO08562.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5091-PA | 582..1428 | 18..862 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:46:44 Download gff for
BO08562.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5091-PA | 582..1428 | 18..862 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:25:46 Download gff for
BO08562.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gny-RA | 628..1480 | 7..862 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:01:50 Download gff for
BO08562.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gny-RA | 628..1480 | 7..862 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:01:50 Download gff for
BO08562.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10380730..10380813 | 779..862 | 100 | -> | Minus |
2L | 10380913..10381110 | 581..778 | 100 | -> | Minus |
2L | 10381163..10381322 | 421..580 | 100 | -> | Minus |
2L | 10381377..10381787 | 7..420 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:25:46 Download gff for
BO08562.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10380730..10380813 | 779..862 | 100 | -> | Minus |
arm_2L | 10380913..10381110 | 581..778 | 100 | -> | Minus |
arm_2L | 10381163..10381322 | 421..580 | 100 | -> | Minus |
arm_2L | 10381377..10381787 | 7..420 | 99 | | Minus |
BO08562.5prime Sequence
876 bp (826 high quality bases) assembled on 2006-01-06
> BO08562.5prime
GAAGTTATCAGTCGACATGAGATCCGAAATTTTGGCAAGCGCCTTTTTGG
GCCTGGCGGTTAGGTCGATTATCTCGCTGTACTCCTACTCCGGCTTCGAT
TCCCCGCCGATGCATGGCGACTACGAGGCCCAGCGCCACTGGCAAGAGAT
CACGGTCAATCTGGCAGTGGGGGAATGGTACACAAACAGCTCCAACAACG
ATCTTCAGTACTGGGGCCTGGATTATCCGCCTCTGACGGCCTACCACAGC
TATTTGGTGGGTCGCATAGGAGCATCCATTGACCCCCGCTTCGTCGAGCT
GCACAAGAGCAGGGGATTCGAGTCGAAGGAGCACAAACGCTTCATGCGCG
CAACAGTTGTTTCTGCTGACGTGCTCATCTATTTGCCGGCAATGTTGTTG
CTGGCCTATTCCCTAGATAAAGCCTTTCGAAGCGATGATAAATTGTTCCT
ATTCACGCTGGTGGCCGCGTATCCCGGACAAACACTCATCGACAATGGAC
ACTTTCAGTATAATAATATATCACTGGGCTTTGCCGCCGTGGCAATTGCC
GCAATCTTGCGAAGAAGATTCTACGCGGCTGCATTTTTCTTCACTTTAGC
CCTTAATTATAAGCAAATGGAGCTGTATCACAGCTTGCCGTTCTTTGCGT
TCCTTCTGGGTGAATGTGTAAGCCAAAAAAGCTTTGCTTCTTTTATCGCT
GAAATCTCACGGATAGCAGCCGTTGTCTTAGGAACATTTGCTATTTTATG
GGTTCCTTGGTTGGGATCTCTGCAGGCCGTACTTCAAGTACTCCATCGCC
TGTTTCCTGTCGCCCGAGGAGTTTTTGAGGACAAGGTGGGCAATGTTTGG
TGTGCCGTCAACGTAGTTTGGGAACT
BO08562.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:26:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5091-PA | 1428 | CG5091-RA | 1..855 | 17..871 | 4250 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:17:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gny-RB | 1521 | CG5091-RB | 47..906 | 17..876 | 4270 | 99.8 | Plus |
gny-RA | 2557 | CG5091-RA | 47..906 | 17..876 | 4270 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:17:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10380149..10380813 | 17..681 | 3325 | 100 | Plus |
2L | 23513712 | 2L | 10380911..10381107 | 680..876 | 955 | 99 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:17:32 has no hits.
BO08562.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:50:37 Download gff for
BO08562.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5091-PA | 1..860 | 17..876 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:46:45 Download gff for
BO08562.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5091-PA | 1..860 | 17..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:30:31 Download gff for
BO08562.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gny-RA | 47..906 | 17..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:32:03 Download gff for
BO08562.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gny-RA | 47..906 | 17..876 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:32:03 Download gff for
BO08562.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10380913..10381107 | 682..876 | 98 | | Plus |
2L | 10380149..10380813 | 17..681 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:30:31 Download gff for
BO08562.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10380149..10380813 | 17..681 | 100 | -> | Plus |
arm_2L | 10380913..10381107 | 682..876 | 98 | | Plus |
BO08562.complete Sequence
1459 bp (1459 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631240
> BO08562.complete
GAAGTTATCAGTCGACATGAGATCCGAAATTTTGGCAAGCGCCTTTTTGG
GCCTGGCGGTTAGGTCGATTATCTCGCTGTACTCCTACTCCGGCTTCGAT
TCCCCGCCGATGCATGGCGACTACGAGGCCCAGCGCCACTGGCAAGAGAT
CACGGTCAATCTGGCAGTGGGGGAATGGTACACAAACAGCTCCAACAACG
ATCTTCAGTACTGGGGCCTGGATTATCCGCCTCTGACGGCCTACCACAGC
TATTTGGTGGGTCGCATAGGAGCATCCATTGACCCCCGCTTCGTCGAGCT
GCACAAGAGCAGGGGATTCGAGTCGAAGGAGCACAAACGCTTCATGCGCG
CAACAGTTGTTTCTGCTGACGTGCTCATCTATTTGCCGGCAATGTTGTTG
CTGGCCTATTCCCTAGATAAAGCCTTTCGAAGCGATGATAAATTGTTCCT
ATTCACGCTGGTGGCCGCGTATCCCGGACAAACACTCATCGACAATGGAC
ACTTTCAGTATAATAATATATCACTGGGCTTTGCCGCCGTGGCAATTGCC
GCAATCTTGCGAAGAAGATTCTACGCGGCTGCATTTTTCTTCACTTTAGC
CCTTAATTATAAGCAAATGGAGCTGTATCACAGCTTGCCGTTCTTTGCGT
TCCTTCTGGGTGAATGTGTAAGCCAAAAAAGCTTTGCTTCTTTTATCGCT
GAAATCTCACGGATAGCAGCCGTTGTCTTAGGAACATTTGCTATTTTATG
GGTTCCTTGGTTGGGATCTCTGCAGGCCGTACTTCAAGTACTCCATCGCC
TGTTTCCTGTCGCCCGAGGAGTTTTTGAGGACAAGGTGGCCAATGTTTGG
TGTGCCGTCAACGTAGTTTGGAAACTAAAGAAGCATATCAGCAATGACCA
AATGGCCCTTGTGTGCATTGCATGCACGTTAATTGCATCTTTGCCAACAA
ATGTACTACTCTTTCGAAGGCGAACTAATGTCGGATTTCTATTAGCGCTT
TTCAACACGAGCCTGGCATTCTTCTTGTTTTCATTTCAAGTGCACGAGAA
GACCATTTTGCTGACTGCTTTACCAGCACTTTTCCTACTTAAGTGCTGGC
CCGACGAAATGATTTTATTTCTGGAAGTTACCGTATTCAGCATGTTGCCT
CTTCTAGCAAGAGATGAATTGTTGGTGCCCGCCGTAGTGGCCACTGTGGC
TTTTCATTTGATATTCAAATGTTTTGATTCAAAGTCGAAGCTCAGCAACG
AATATCCACTGAAGTACATTGCAAATATATCGCAGATTCTGATGATCAGT
GTTGTGGTTGCTTCTCTGACCGTTCCGGCACCTACAAAGTATCCAGATCT
TTGGCCCCTTATTATTTCGGTTACAAGCTGTGGACACTTCTTCTTGTTTT
TCTTGTGGGGAAATGTTCAACAATTTAGCAGCAAGTTAAGTGCAAGCTTT
CTAGACCAT
BO08562.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:54:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gny-RB | 1428 | CG5091-PB | 1..1425 | 17..1441 | 7125 | 100 | Plus |
gny-RA | 1428 | CG5091-PA | 1..1425 | 17..1441 | 7125 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:54:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gny-RB | 1521 | CG5091-RB | 47..1471 | 17..1441 | 7125 | 100 | Plus |
gny-RA | 2557 | CG5091-RA | 47..1471 | 17..1441 | 7125 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:54:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10380149..10380813 | 17..681 | 3325 | 100 | Plus |
2L | 23513712 | 2L | 10381377..10381778 | 1040..1441 | 2010 | 100 | Plus |
2L | 23513712 | 2L | 10380911..10381111 | 680..880 | 1005 | 100 | Plus |
2L | 23513712 | 2L | 10381163..10381324 | 880..1041 | 810 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:54:27 has no hits.
BO08562.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:11:37 Download gff for
BO08562.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5091-RA | 1..1428 | 17..1442 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:32:26 Download gff for
BO08562.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5091-RA | 32..1465 | 17..1453 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:06:39 Download gff for
BO08562.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gny-RA | 47..1471 | 17..1443 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:11:37 Download gff for
BO08562.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5091-RA | 32..1465 | 17..1453 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:07:04 Download gff for
BO08562.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gny-RA | 47..1471 | 17..1443 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:07:04 Download gff for
BO08562.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10380149..10380813 | 17..681 | 100 | -> | Plus |
2L | 10380913..10381110 | 682..879 | 100 | -> | Plus |
2L | 10381163..10381322 | 880..1039 | 100 | -> | Plus |
2L | 10381377..10381778 | 1040..1443 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:06:39 Download gff for
BO08562.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10380149..10380813 | 17..681 | 100 | -> | Plus |
arm_2L | 10380913..10381110 | 682..879 | 100 | -> | Plus |
arm_2L | 10381163..10381322 | 880..1039 | 100 | -> | Plus |
arm_2L | 10381377..10381778 | 1040..1443 | 99 | | Plus |
BO08562.pep Sequence
Translation from 16 to 1459
> BO08562.pep
MRSEILASAFLGLAVRSIISLYSYSGFDSPPMHGDYEAQRHWQEITVNLA
VGEWYTNSSNNDLQYWGLDYPPLTAYHSYLVGRIGASIDPRFVELHKSRG
FESKEHKRFMRATVVSADVLIYLPAMLLLAYSLDKAFRSDDKLFLFTLVA
AYPGQTLIDNGHFQYNNISLGFAAVAIAAILRRRFYAAAFFFTLALNYKQ
MELYHSLPFFAFLLGECVSQKSFASFIAEISRIAAVVLGTFAILWVPWLG
SLQAVLQVLHRLFPVARGVFEDKVANVWCAVNVVWKLKKHISNDQMALVC
IACTLIASLPTNVLLFRRRTNVGFLLALFNTSLAFFLFSFQVHEKTILLT
ALPALFLLKCWPDEMILFLEVTVFSMLPLLARDELLVPAVVATVAFHLIF
KCFDSKSKLSNEYPLKYIANISQILMISVVVASLTVPAPTKYPDLWPLII
SVTSCGHFFLFFLWGNVQQFSSKLSASFLDH
BO08562.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:14:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gny-PB | 475 | CG5091-PB | 1..475 | 1..475 | 2445 | 100 | Plus |
gny-PA | 475 | CG5091-PA | 1..475 | 1..475 | 2445 | 100 | Plus |
xit-PA | 511 | CG4542-PA | 21..503 | 30..477 | 370 | 28.3 | Plus |