Clone Sequence Records
BO08563.3prime Sequence
934 bp (793 high quality bases) assembled on 2006-01-06
> BO08563.3prime
ATGGTCTAGAAAGCTTGCCTTATTCCGGAGAAAGTAGCGATACAAAGTGT
TCTTTTGTCCGCTGGCGGTTGTGGCAGTTGCTGGGGCTCCACTGGCGATA
GCTGCGCTTGTAGCGGCACCGGTCCCATTCGTTTGCTCAACAGCCGCCAC
CAGGGAGCTGCGCCACGATGCGATCAACTCCGTCTGCAGCTCCACGGGTA
GCTCTTTGAACACCTCGGCATCCACACCCGCTGGACAAACTATATTCGTT
AGGGCATCACACGTGGCCGTACTACTACTGCTGGTGACCACCGCTGTCGT
GGTGGGTGAGGGAAATGGCAAGGTTGTTGTGCTGGGTGCGCTCATGGCTA
TGGAGTCGTCCATGGGAGAAGGAAGCGGCGAGGATGCCGTAGAACTAGCA
TTTGAGCTCAAGCGACTGGCAGTGCGCGTCGTAACAAAGCGTAGACTGCC
GTCGATCCGTTGCAGCAACGTGTTTGGTGGCTGGACGGTGCGGAAGCGAG
GCGCAGGCGCGGACGTAGAGGTAGAAGGCGTGGTGCTCATGGGAAAGTCT
TTCTCGCTATCCCGCGAGTTGAGGCGCAGATCACAGACACGCAGTTTGCT
GGGCGAAGCTACTTCGGCGGCGGAATCTCCCACATCCGCCGCCAAGCGGC
TGCGCTTAGAAACAAGTAATCGGCCAATGCGACTCTTTTTCGGCGAGGGT
TCCACCTCAGTCTCAGAGAAGTCGCTGAAATCCGAATTGGTGGCCGCTGA
TTCGGAACCATTATCAAGTAGCATGGGCACAGGTGATGCAGTAGTGGCTC
TTCTCCTATAGAACTGATCGCTGGGTTTGAATGTTGTTGGCGAGGAGCGG
AAGGCGCACTCGTCTGATGTGGGACTCTCCGCTGTGGGACTTGTGAGACT
CGTATTTGTCAGTGAGGTGATAGACTGCACCTCC
BO08563.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:26:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7602-PB | 2214 | DNApol-iota-RB | 1296..2211 | 934..19 | 4580 | 100 | Minus |
| CG7602-PA | 2214 | DNApol-iota-RA | 1296..2211 | 934..19 | 4580 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:10:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DNApol-iota-RC | 3144 | CG7602-RC | 1380..2295 | 934..19 | 4580 | 100 | Minus |
| DNApol-iota-RA | 2622 | CG7602-RA | 1445..2360 | 934..19 | 4580 | 100 | Minus |
| DNApol-iota-RB | 2544 | CG7602-RB | 1367..2282 | 934..19 | 4580 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:10:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8235625..8236540 | 934..19 | 4580 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:10:36 has no hits.
BO08563.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:50:39 Download gff for
BO08563.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7602-PA | 1296..2214 | 16..934 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:46:46 Download gff for
BO08563.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7602-PA | 1296..2214 | 16..934 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:41:18 Download gff for
BO08563.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DNApol-iota-RB | 1367..2288 | 13..934 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:08:29 Download gff for
BO08563.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DNApol-iota-RB | 1367..2288 | 13..934 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:08:29 Download gff for
BO08563.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8235625..8236546 | 13..934 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:41:18 Download gff for
BO08563.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4061347..4062268 | 13..934 | 99 | | Minus |
BO08563.5prime Sequence
889 bp (790 high quality bases) assembled on 2006-01-06
> BO08563.5prime
GAAGTTATCAGTCGACATGGACTTCGCTAGCGTACTCGGTAAGAGCGAGG
CGCATCAGCGCACCATTATCCACCTGGACATGGACTACTTCTACGCTCAG
GTGGAGGAGATTCGGGATCCAACGTTGCGGTCGAAGGCCCTGGGCATTCA
GCAGAAGAACATCGTGGTCACCTGCAACTATGTGGCGCGGGCCAAAGGAG
TGACAAAATTGATGCTTATTGCAGAGGCACAGCGCATCTGTCCCGATTTG
GTTCTTGTCAATGGAGAAGACCTCGCCCCTTATCGGCAGATGTCGCAAAG
AATCTTTGACCTCCTGCTTAACTACACTCCCCTAGTGGAGAAGCTAGGCT
TCGATGAGAACTTTATGGATGTGACTGCACTTGTAGAACTGCGACAGGCT
CACGTTGCTGAGGCCCTGTTGAGACCACCGGTGGGTCATACGTATCCGGC
GGATGGTACTCCCTTGTCAAATTGCGATTGTGGCTGTGCCCAGCGGCTGG
CCATCGGCACTCGGATCGCCCAGGAAATCAGGGAGGAGCTCAAGCTCCGG
CTGGGAATTACCTGCTGCGCTGGAATCGCCTATAACAAGCTACTGGCCAA
GCTAGTCGGCAGTAGTCATGAGCCAAATCAGCAGACCGTTCTTGTTTCCA
CCTATGCAGAGCAGTTCATGCGGGAACTGGGCGACCTAAAGCGAGTCACT
GGGATTGGGCAGAAGACGCAGTGCCTTCTCCTGGAGGCGGGTATGTCATC
CGTCGAGCAGCTGCAGCAGTGCGACATGGACGTAATGCGGAAGAAATTTG
GATTTGAAACTGCCACCCGACTGCGAGATCTGGCCTTTGGCCGTGACACG
AGCTTAGTCCCGTCCAGCGGAAAACCCAAGACCATTGGA
BO08563.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:26:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7602-PB | 2214 | DNApol-iota-RB | 1..844 | 17..860 | 4220 | 100 | Plus |
| CG7602-PA | 2214 | DNApol-iota-RA | 1..844 | 17..860 | 4220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:10:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DNApol-iota-RC | 3144 | CG7602-RC | 85..957 | 17..889 | 4320 | 99.8 | Plus |
| DNApol-iota-RA | 2622 | CG7602-RA | 150..1022 | 17..889 | 4320 | 99.8 | Plus |
| DNApol-iota-RB | 2544 | CG7602-RB | 72..944 | 17..889 | 4320 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:10:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8234266..8235138 | 17..889 | 4320 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:10:07 has no hits.
BO08563.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:50:40 Download gff for
BO08563.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7602-PA | 1..872 | 17..888 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:46:47 Download gff for
BO08563.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7602-PA | 1..872 | 17..888 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:04:08 Download gff for
BO08563.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DNApol-iota-RB | 68..943 | 13..888 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:47:58 Download gff for
BO08563.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DNApol-iota-RB | 68..943 | 13..888 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:47:58 Download gff for
BO08563.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8234262..8235137 | 13..888 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:04:08 Download gff for
BO08563.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4059984..4060859 | 13..888 | 99 | | Plus |
BO08563.complete Sequence
2245 bp (2245 high quality bases) assembled on 2006-08-21
GenBank Submission: FJ631241
> BO08563.complete
GAAGTTATCAGTCGACATGGACTTCGCTAGCGTACTCGGTAAGAGCGAGG
CGCATCAGCGCACCATTATCCACCTGGACATGGACTACTTCTACGCTCAG
GTGGAGGAGATTCGGGATCCAACGTTGCGGTCGAAGGCCCTGGGCATTCA
GCAGAAGAACATCGTGGTCACCTGCAACTATGTGGCGCGGGCCAAAGGAG
TGACAAAATTGATGCTTATTGCAGAGGCACAGCGCATCTGTCCCGATTTG
GTTCTTGTCAATGGAGAAGACCTCGCCCCTTATCGGCAGATGTCGCAAAG
AATCTTTGACCTCCTGCTTAACTACACTCCCCTAGTGGAGAAGCTAGGCT
TCGATGAGAACTTTATGGATGTGACTGCACTTGTAGAACTGCGACAGGCT
CACGTTGCTGAGGCCCTGTTGAGACCACCGGTGGGTCATACGTATCCGGC
GGATGGTACTCCCTTGTCAAATTGCGATTGTGGCTGTGCCCAGCGGCTGG
CCATCGGCACTCGGATCGCCCAGGAAATCAGGGAGGAGCTCAAGCTCCGG
CTGGGAATTACCTGCTGCGCTGGAATCGCCTATAACAAGCTACTGGCCAA
GCTAGTCGGCAGTAGTCATGAGCCAAATCAGCAGACCGTTCTTGTTTCCA
CCTATGCAGAGCAGTTCATGCGGGAACTGGGCGACCTAAAGCGAGTCACT
GGGATTGGGCAGAAGACGCAGTGCCTTCTCCTGGAGGCGGGTATGTCATC
CGTCGAGCAGCTGCAGCAGTGCGACATGGACGTAATGCGGAAGAAATTTG
GATTTGAAACTGCCACCCGACTGCGAGATCTGGCCTTTGGCCGTGACACG
AGCTTAGTCCGTCCCAGCGGAAAACCCAAGACCATTGGAATGGAAGATGC
CTGTAAGCCAATATCCGTGCGTACCGATGTGGAGGAAAGGTTTCGCATGC
TGCTCAAGCGGCTGGTGGAGCAAGTTGCAGAGGATGGACGCGTTCCCATT
GCCATCAAGGTCGTGTTGCGCAAGTTCGACTCGCAAAAGAAGAGCAGCCA
CCGTGAGACCAAACAGGCCAACATTCTACCCTCCCTTTTTAAGACCTCCA
TGTGTCCAGGAGAAACTGGTGTGAGCAAGGTACAACTGGCGGATGGCGCC
CAGGATAAACTCCTCAAGATTGTGATGCGACTTTTTGAGCGAATTGTTGA
TATGAGCAAGCCCTTCAACATCACTCTACTAGGCCTCGCATTCTCCAAGT
TCCAGGAGCGCAAGGTTGGCTCCTCATCAATTGCTAATTTCCTGATCAAA
AAGGCGGATCTGGAGGTGCAGTCTATCACCTCACTGACAAATACGAGTCT
CACAAGTCCCACAGCGGAGAGTCCCACATCAGACGAGTGCGCCTTCCGCT
CCTCGCCAACAACATTCAAACCCAGCGATCAGTTCTATAGGAGAAGAGCC
ACTACTGCATCACCTGTGCCCATGCTACTTGATAATGGTTCCGAATCAGC
GGCCACCAATTCGGATTTCAGCGACTTCTCTGAGACTGAGGTGGAACCCT
CGCCGAAAAAGAGTCGCATTGGCCGATTACTTGTTTCTAAGCGCAGCCGC
TTGGCGGCGGATGTGGGAGATTCCGCCGCCGAAGTAGCTTCGCCCAGCAA
ACTGCGTGTCTGTGATCTGCGCCTCAACTCGCGGGATAGCGAGAAAGACT
TTCCCATGAGCACCACGCCTTCTACCTCTACGTCCGCGCCTGCGCCTCGC
TTCCGCACCGTCCAGCCACCAAACACGTTGCTGCAACGGATCGACGGCAG
TCTACGCTTTGTTACGACGCGCACTGCCAGTCGCTTGAGCTCAAATGCTA
GTTCTACGGCATCCTCGCCGCTTCCTTCTCCCATGGACGACTCCATAGCC
ATGAGCGCACCCAGCACAACAACCTTGCCATTTCCCTCACCCACCACGAC
AGCGGTGGTCACCAGCAGTAGTAGTACGGCCACGTGTGATGCCCTAACGA
ATATAGTTTGTCCAGCGGGTGTGGATGCCGAGGTGTTCAAAGAGCTACCC
GTGGAGCTGCAGACGGAGTTGATCGCATCGTGGCGCAGCTCCCTGGTGGC
GGCTGTTGAGCAAACGAATGGGACCGGTGCCGCTACAAGCGCAGCTATCG
CCAGTGGAGCCCCAGCAACTGCCACAACCGCCAGCGGACAAAAGAACACT
TTGTATCGCTACTTTCTCCGGAATAAGGCAAGCTTTCTAGACCAT
BO08563.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:48:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DNApol-iota-RC | 2214 | CG7602-PC | 1..2211 | 17..2227 | 11055 | 100 | Plus |
| DNApol-iota-RA | 2214 | CG7602-PA | 1..2211 | 17..2227 | 11055 | 100 | Plus |
| DNApol-iota-RB | 2214 | CG7602-PB | 1..2211 | 17..2227 | 11055 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:48:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DNApol-iota-RC | 3144 | CG7602-RC | 85..2295 | 17..2227 | 11055 | 100 | Plus |
| DNApol-iota-RA | 2622 | CG7602-RA | 150..2360 | 17..2227 | 11055 | 100 | Plus |
| DNApol-iota-RB | 2544 | CG7602-RB | 72..2282 | 17..2227 | 11055 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:48:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8235287..8236540 | 974..2227 | 6270 | 100 | Plus |
| 3R | 32079331 | 3R | 8234266..8235224 | 17..975 | 4795 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:48:14 has no hits.
BO08563.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:54:15 Download gff for
BO08563.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DNApol-iota-RA | 1..2214 | 17..2230 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:10:35 Download gff for
BO08563.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DNApol-iota-RA | 99..2319 | 13..2233 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:38:23 Download gff for
BO08563.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DNApol-iota-RB | 72..2282 | 17..2229 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:54:15 Download gff for
BO08563.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DNApol-iota-RA | 99..2319 | 13..2233 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:08:35 Download gff for
BO08563.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DNApol-iota-RB | 72..2282 | 17..2229 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:08:35 Download gff for
BO08563.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8234266..8235222 | 17..973 | 100 | -> | Plus |
| 3R | 8235287..8236540 | 974..2229 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:38:23 Download gff for
BO08563.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4059988..4060944 | 17..973 | 100 | -> | Plus |
| arm_3R | 4061009..4062262 | 974..2229 | 99 | | Plus |
BO08563.pep Sequence
Translation from 16 to 2245
> BO08563.pep
MDFASVLGKSEAHQRTIIHLDMDYFYAQVEEIRDPTLRSKALGIQQKNIV
VTCNYVARAKGVTKLMLIAEAQRICPDLVLVNGEDLAPYRQMSQRIFDLL
LNYTPLVEKLGFDENFMDVTALVELRQAHVAEALLRPPVGHTYPADGTPL
SNCDCGCAQRLAIGTRIAQEIREELKLRLGITCCAGIAYNKLLAKLVGSS
HEPNQQTVLVSTYAEQFMRELGDLKRVTGIGQKTQCLLLEAGMSSVEQLQ
QCDMDVMRKKFGFETATRLRDLAFGRDTSLVRPSGKPKTIGMEDACKPIS
VRTDVEERFRMLLKRLVEQVAEDGRVPIAIKVVLRKFDSQKKSSHRETKQ
ANILPSLFKTSMCPGETGVSKVQLADGAQDKLLKIVMRLFERIVDMSKPF
NITLLGLAFSKFQERKVGSSSIANFLIKKADLEVQSITSLTNTSLTSPTA
ESPTSDECAFRSSPTTFKPSDQFYRRRATTASPVPMLLDNGSESAATNSD
FSDFSETEVEPSPKKSRIGRLLVSKRSRLAADVGDSAAEVASPSKLRVCD
LRLNSRDSEKDFPMSTTPSTSTSAPAPRFRTVQPPNTLLQRIDGSLRFVT
TRTASRLSSNASSTASSPLPSPMDDSIAMSAPSTTTLPFPSPTTTAVVTS
SSSTATCDALTNIVCPAGVDAEVFKELPVELQTELIASWRSSLVAAVEQT
NGTGAATSAAIASGAPATATTASGQKNTLYRYFLRNKASFLDH
BO08563.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:57:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DNApol-iota-PC | 737 | CG7602-PC | 1..737 | 1..737 | 3699 | 100 | Plus |
| DNApol-iota-PA | 737 | CG7602-PA | 1..737 | 1..737 | 3699 | 100 | Plus |
| DNApol-iota-PB | 737 | CG7602-PB | 1..737 | 1..737 | 3699 | 100 | Plus |
| DNApol-eta-PA | 885 | CG7143-PA | 14..346 | 13..305 | 314 | 29.1 | Plus |
