Clone Sequence Records
BO08569.3prime Sequence
929 bp (869 high quality bases) assembled on 2006-01-06
> BO08569.3prime
ATGGTCTAGAAAGCTTGCGATGCCCTGGTTGATGCCTATTTTCGTCTTGG
TGAGGAGACCCTCGTCGCCCATGTCTGCATTGTAGCCAGGACGGTACTTC
ATGCCGGGAGCATTGAACCAGACATCACGCCAGACTTTGCCGTCGTCAGC
GCTGCGCACCAGCTCCGGGACATCGAAACGCGGCACATTGAAGTAATTCA
TCAGATCGGGCTTCTCATGGCAGTACTTGATACGGGCTTCGCACCACTCG
GCCTCCAGCGGGAAACGCCAGTCGAGCATCTTCTTGTTGTGAATATCGGC
CTCAAACTGGTTGAAGTCGATGCGTTCGATATCCTCCACCACAACCTCAG
TCTCACCGCCGGCTGTCCAGTCGTAGATGAGCAGCTCGGCATGGGTGGAG
ATGTCCTTGAGGTACTGCTGCTTGTACAGCTGCTCCAAATCGCTCAAGTA
GGCATCGCTGAACACCTTTGACTGCACCTCGTAGTCCACATTGCGTGCCT
TGATCTGCTTCTTCACGGCATCGACCGGCAGATCCAAGTAGATAACCAAA
TGCGGCTTCAGCAGCTCCCCGATGGTGTTCTGTCGGAGCTCATTATACAC
GGAACGCGCACCGCGTGACAGATAACCCTGCCGAAACATGGCCTCCATGA
AGACAAAGTCCGAGTAGGGGCTGCGCTCGAGGACAACACCCTGGCCGGTG
CTAAGGACGTGCTGCAGGGCATCAATGTACTGCGAATAGCGCAGCATGTA
CATGCGAATCTGGAACTGGGCAGCCAGATCGTGGCTGGGATCCAGGCAGA
AGTTGCGCACATCGTAGCTTCGGCAGCTGGGCGGCAACTGANGATCCAAC
TTCCTCATGTCATAGCCGTACGAATTGATGTAGATTAGGTCCAGATCAAC
TGCCGGATAGTACTCCATGTCCAGCTCCT
BO08569.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:27:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6343-PA | 1224 | ND42-RA | 311..1221 | 929..19 | 4536 | 99.8 | Minus |
CG6343-PB | 1224 | ND42-RB | 311..1221 | 929..19 | 4536 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 11:41:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ND42-RC | 1423 | CG6343-RC | 428..1338 | 929..19 | 4544 | 99.9 | Minus |
ND42-RB | 1618 | CG6343-RB | 623..1533 | 929..19 | 4544 | 99.9 | Minus |
ND42-RA | 1379 | CG6343-RA | 384..1294 | 929..19 | 4544 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 11:41:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22028331..22029149 | 929..111 | 4084 | 99.9 | Minus |
3R | 32079331 | 3R | 22029216..22029308 | 111..19 | 465 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 11:41:41 has no hits.
BO08569.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:50:50 Download gff for
BO08569.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ND42-PB | 311..1224 | 18..929 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:47:03 Download gff for
BO08569.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6343-PB | 311..1224 | 18..929 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:42:35 Download gff for
BO08569.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ND42-RA | 384..1294 | 19..929 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:35:25 Download gff for
BO08569.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ND42-RA | 384..1294 | 19..929 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:35:25 Download gff for
BO08569.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22028331..22029148 | 112..929 | 99 | -> | Minus |
3R | 22029216..22029308 | 19..111 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:42:35 Download gff for
BO08569.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17854053..17854870 | 112..929 | 99 | -> | Minus |
arm_3R | 17854938..17855030 | 19..111 | 100 | | Minus |
BO08569.5prime Sequence
941 bp (842 high quality bases) assembled on 2006-01-06
> BO08569.5prime
GAAGTTATCAGTCGACATGACCGCCGTGTTCCGCGTAGGACTGGTGCGGC
TCGTCAGCCGCGCCACACAGTCGCCCAATCTACTCCAGGCGCAGACGAAT
GCCCTGCCTGCTGCCTTCCAGCAGCGATGCAGCATCTCCGGCAAGACGAT
GCGAGGTGGACCACGGGTGCCCAAGGCCGCCCCCTATCCGTACAAGACGA
AGAAGTACAGCGTGTTCAATGCTATTTTCGACAAGACCTCCAAGCGTTTT
GACGAGAACTCCAAGGTGATCTGTGTGGAGGGACCCATCGCGGCCGGCAA
GTCAAAGTTCGCCAAGGAACTGGCTGAGGAGCTGGACATGGAGTACTATC
CGGCAGTTGATCTGGACCTAATCTACATCAATTCGTACGGCTATGACATG
AGGAAGTTGGATCCTCAGTTGCCGCCCAGCTGCCGAAGCTACGATGTGCG
CAACTTCTGCCTGGATCCCAGCCACGATCTGGCTGCCCAGTTCCAGATTC
GCATGTACATGCTGCGCTATTCGCAGTACATTGATGCCCTGCAGCACGTC
CTTAGCACCGGCCAGGGTGTTGTCCTCGAGCGCAGCCCCTACTCGGACTT
TGTCTTCATGGAGGCCATGTTTCGGCAGGGTTATCTGTCACGCGGTGCGC
GTTCCGTGTATAATGAGCTCCGACAGAACACCATCGGGGAGCTGCTGAAG
CCGCATTTGGTTATCTACTTGGATCTGCCGGTCGATGCCGTGAAGAAGCA
GATCAAGGCACGCAATGTGGACTACGAGGTGCAGTCAAAGGTGTTCAGCG
ATGCCTACTTGAGCGATTTGGAGCAGCTGTACAAGCAGCAGTACCTTCAG
GACATCTCCACCCATGCCGAGCTGCTCATCTACGACTGGACAGCCGGCGG
TGAGACTGANGTTGTGGTGGAGGATATCGAACGCATCGACT
BO08569.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:27:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6343-PA | 1224 | ND42-RA | 1..925 | 17..941 | 4556 | 99.6 | Plus |
CG6343-PB | 1224 | ND42-RB | 1..925 | 17..941 | 4556 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:39:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ND42-RC | 1423 | CG6343-RC | 118..1042 | 17..941 | 4584 | 99.7 | Plus |
ND42-RB | 1618 | CG6343-RB | 313..1237 | 17..941 | 4584 | 99.7 | Plus |
ND42-RA | 1379 | CG6343-RA | 74..998 | 17..941 | 4584 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:39:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22028021..22028945 | 17..941 | 4584 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-10 03:39:25 has no hits.
BO08569.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:50:52 Download gff for
BO08569.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ND42-PB | 1..925 | 17..941 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:47:04 Download gff for
BO08569.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6343-PB | 1..925 | 17..941 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:45:11 Download gff for
BO08569.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ND42-RA | 74..998 | 17..941 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:18:09 Download gff for
BO08569.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ND42-RA | 74..998 | 17..941 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:18:09 Download gff for
BO08569.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22028016..22028945 | 8..941 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:45:11 Download gff for
BO08569.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17853738..17854667 | 8..941 | 99 | | Plus |
BO08569.complete Sequence
1255 bp (1255 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631242
> BO08569.complete
GAAGTTATCAGTCGACATGACCGCCGTGTTCCGCGTAGGACTGGTGCGGC
TCGTCAGCCGCGCCACACAGTCGCCCAATCTACTCCAGGCGCAGACGAAT
GCCCTGCCTGCTGCCTTCCAGCAGCGATGCAGCATCTCCGGCAAGACGAT
GCGAGGTGGACCACGGGTGCCCAAGGCCGCCCCCTATCCGTACAAGACGA
AGAAGTACAGCGTGTTCAATGCTATTTTCGACAAGACCTCCAAGCGTTTT
GACGAGAACTCCAAGGTGATCTGTGTGGAGGGACCCATCGCGGCCGGCAA
GTCAAAGTTCGCCAAGGAACTGGCTGAGGAGCTGGACATGGAGTACTATC
CGGCAGTTGATCTGGACCTAATCTACATCAATTCGTACGGCTATGACATG
AGGAAGTTGGATCCTCAGTTGCCGCCCAGCTGCCGAAGCTACGATGTGCG
CAACTTCTGCCTGGATCCCAGCCACGATCTGGCTGCCCAGTTCCAGATTC
GCATGTACATGCTGCGCTATTCGCAGTACATTGATGCCCTGCAGCACGTC
CTTAGCACCGGCCAGGGTGTTGTCCTCGAGCGCAGCCCCTACTCGGACTT
TGTCTTCATGGAGGCCATGTTTCGGCAGGGTTATCTGTCACGCGGTGCGC
GTTCCGTGTATAATGAGCTCCGACAGAACACCATCGGGGAGCTGCTGAAG
CCGCATTTGGTTATCTACTTGGATCTGCCGGTCGATGCCGTGAAGAAGCA
GATCAAGGCACGCAATGTGGACTACGAGGTGCAGTCAAAGGTGTTCAGCG
ATGCCTACTTGAGCGATTTGGAGCAGCTGTACAAGCAGCAGTACCTCAAG
GACATCTCCACCCATGCCGAGCTGCTCATCTACGACTGGACAGCCGGCGG
TGAGACTGAGGTTGTGGTGGAGGATATCGAACGCATCGACTTCAACCAGT
TTGAGGCCGATATTCACAACAAGAAGATGCTCGACTGGCGTTTCCCGCTG
GAGGCCGAGTGGTGCGAAGCCCGTATCAAGTACTGCCATGAGAAGCCCGA
TCTGATGAATTACTTCAATGTGCCGCGTTTCGATGTCCCGGAGCTGGTGC
GCAGCGCTGACGACGGCAAAGTCTGGCGTGATGTCTGGTTCAATGCTCCC
GGCATGAAGTACCGTCCTGGCTACAATGCAGACATGGGCGACGAGGGTCT
CCTCACCAAGACGAAAATAGGCATCAACCAGGGCATCGCAAGCTTTCTAG
ACCAT
BO08569.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:52:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ND42-RC | 1224 | CG6343-PC | 1..1221 | 17..1237 | 6105 | 100 | Plus |
ND42-RB | 1224 | CG6343-PB | 1..1221 | 17..1237 | 6105 | 100 | Plus |
ND42-RA | 1224 | CG6343-PA | 1..1221 | 17..1237 | 6105 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:52:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ND42-RC | 1423 | CG6343-RC | 118..1338 | 17..1237 | 6105 | 100 | Plus |
ND42-RB | 1618 | CG6343-RB | 313..1533 | 17..1237 | 6105 | 100 | Plus |
ND42-RA | 1379 | CG6343-RA | 74..1294 | 17..1237 | 6105 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:52:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22028021..22029149 | 17..1145 | 5645 | 100 | Plus |
3R | 32079331 | 3R | 22029216..22029308 | 1145..1237 | 465 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:52:32 has no hits.
BO08569.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:11:38 Download gff for
BO08569.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ND42-RB | 1..1224 | 17..1238 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:32:28 Download gff for
BO08569.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ND42-RB | 231..1456 | 8..1237 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:42:31 Download gff for
BO08569.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ND42-RA | 74..1294 | 17..1239 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:11:38 Download gff for
BO08569.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ND42-RB | 231..1456 | 8..1237 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:33:02 Download gff for
BO08569.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ND42-RA | 74..1294 | 17..1239 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:33:02 Download gff for
BO08569.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22029216..22029308 | 1145..1239 | 97 | | Plus |
3R | 22028021..22029148 | 17..1144 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:42:31 Download gff for
BO08569.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17854938..17855030 | 1145..1239 | 97 | | Plus |
arm_3R | 17853743..17854870 | 17..1144 | 100 | -> | Plus |
BO08569.pep Sequence
Translation from 16 to 1255
> BO08569.pep
MTAVFRVGLVRLVSRATQSPNLLQAQTNALPAAFQQRCSISGKTMRGGPR
VPKAAPYPYKTKKYSVFNAIFDKTSKRFDENSKVICVEGPIAAGKSKFAK
ELAEELDMEYYPAVDLDLIYINSYGYDMRKLDPQLPPSCRSYDVRNFCLD
PSHDLAAQFQIRMYMLRYSQYIDALQHVLSTGQGVVLERSPYSDFVFMEA
MFRQGYLSRGARSVYNELRQNTIGELLKPHLVIYLDLPVDAVKKQIKARN
VDYEVQSKVFSDAYLSDLEQLYKQQYLKDISTHAELLIYDWTAGGETEVV
VEDIERIDFNQFEADIHNKKMLDWRFPLEAEWCEARIKYCHEKPDLMNYF
NVPRFDVPELVRSADDGKVWRDVWFNAPGMKYRPGYNADMGDEGLLTKTK
IGINQGIASFLDH
BO08569.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:13:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ND42-PC | 407 | CG6343-PC | 1..407 | 1..407 | 2146 | 100 | Plus |
ND42-PB | 407 | CG6343-PB | 1..407 | 1..407 | 2146 | 100 | Plus |
ND42-PA | 407 | CG6343-PA | 1..407 | 1..407 | 2146 | 100 | Plus |