Clone BO08569 Report

Search the DGRC for BO08569

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:85
Well:69
Vector:pDNR-Dual
Associated Gene/TranscriptND42-RA
Protein status:BO08569.pep: validated full length
Sequenced Size:1255

Clone Sequence Records

BO08569.3prime Sequence

929 bp (869 high quality bases) assembled on 2006-01-06

> BO08569.3prime
ATGGTCTAGAAAGCTTGCGATGCCCTGGTTGATGCCTATTTTCGTCTTGG
TGAGGAGACCCTCGTCGCCCATGTCTGCATTGTAGCCAGGACGGTACTTC
ATGCCGGGAGCATTGAACCAGACATCACGCCAGACTTTGCCGTCGTCAGC
GCTGCGCACCAGCTCCGGGACATCGAAACGCGGCACATTGAAGTAATTCA
TCAGATCGGGCTTCTCATGGCAGTACTTGATACGGGCTTCGCACCACTCG
GCCTCCAGCGGGAAACGCCAGTCGAGCATCTTCTTGTTGTGAATATCGGC
CTCAAACTGGTTGAAGTCGATGCGTTCGATATCCTCCACCACAACCTCAG
TCTCACCGCCGGCTGTCCAGTCGTAGATGAGCAGCTCGGCATGGGTGGAG
ATGTCCTTGAGGTACTGCTGCTTGTACAGCTGCTCCAAATCGCTCAAGTA
GGCATCGCTGAACACCTTTGACTGCACCTCGTAGTCCACATTGCGTGCCT
TGATCTGCTTCTTCACGGCATCGACCGGCAGATCCAAGTAGATAACCAAA
TGCGGCTTCAGCAGCTCCCCGATGGTGTTCTGTCGGAGCTCATTATACAC
GGAACGCGCACCGCGTGACAGATAACCCTGCCGAAACATGGCCTCCATGA
AGACAAAGTCCGAGTAGGGGCTGCGCTCGAGGACAACACCCTGGCCGGTG
CTAAGGACGTGCTGCAGGGCATCAATGTACTGCGAATAGCGCAGCATGTA
CATGCGAATCTGGAACTGGGCAGCCAGATCGTGGCTGGGATCCAGGCAGA
AGTTGCGCACATCGTAGCTTCGGCAGCTGGGCGGCAACTGANGATCCAAC
TTCCTCATGTCATAGCCGTACGAATTGATGTAGATTAGGTCCAGATCAAC
TGCCGGATAGTACTCCATGTCCAGCTCCT

BO08569.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:27:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG6343-PA 1224 ND42-RA 311..1221 929..19 4536 99.8 Minus
CG6343-PB 1224 ND42-RB 311..1221 929..19 4536 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 11:41:45
Subject Length Description Subject Range Query Range Score Percent Strand
ND42-RC 1423 CG6343-RC 428..1338 929..19 4544 99.9 Minus
ND42-RB 1618 CG6343-RB 623..1533 929..19 4544 99.9 Minus
ND42-RA 1379 CG6343-RA 384..1294 929..19 4544 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 11:41:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22028331..22029149 929..111 4084 99.9 Minus
3R 32079331 3R 22029216..22029308 111..19 465 100 Minus
Blast to na_te.dros performed on 2015-02-03 11:41:41 has no hits.

BO08569.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:50:50 Download gff for BO08569.3prime
Subject Subject Range Query Range Percent Splice Strand
ND42-PB 311..1224 18..929 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:47:03 Download gff for BO08569.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6343-PB 311..1224 18..929 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:42:35 Download gff for BO08569.3prime
Subject Subject Range Query Range Percent Splice Strand
ND42-RA 384..1294 19..929 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:35:25 Download gff for BO08569.3prime
Subject Subject Range Query Range Percent Splice Strand
ND42-RA 384..1294 19..929 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:35:25 Download gff for BO08569.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 22028331..22029148 112..929 99 -> Minus
3R 22029216..22029308 19..111 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:42:35 Download gff for BO08569.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17854053..17854870 112..929 99 -> Minus
arm_3R 17854938..17855030 19..111 100   Minus

BO08569.5prime Sequence

941 bp (842 high quality bases) assembled on 2006-01-06

> BO08569.5prime
GAAGTTATCAGTCGACATGACCGCCGTGTTCCGCGTAGGACTGGTGCGGC
TCGTCAGCCGCGCCACACAGTCGCCCAATCTACTCCAGGCGCAGACGAAT
GCCCTGCCTGCTGCCTTCCAGCAGCGATGCAGCATCTCCGGCAAGACGAT
GCGAGGTGGACCACGGGTGCCCAAGGCCGCCCCCTATCCGTACAAGACGA
AGAAGTACAGCGTGTTCAATGCTATTTTCGACAAGACCTCCAAGCGTTTT
GACGAGAACTCCAAGGTGATCTGTGTGGAGGGACCCATCGCGGCCGGCAA
GTCAAAGTTCGCCAAGGAACTGGCTGAGGAGCTGGACATGGAGTACTATC
CGGCAGTTGATCTGGACCTAATCTACATCAATTCGTACGGCTATGACATG
AGGAAGTTGGATCCTCAGTTGCCGCCCAGCTGCCGAAGCTACGATGTGCG
CAACTTCTGCCTGGATCCCAGCCACGATCTGGCTGCCCAGTTCCAGATTC
GCATGTACATGCTGCGCTATTCGCAGTACATTGATGCCCTGCAGCACGTC
CTTAGCACCGGCCAGGGTGTTGTCCTCGAGCGCAGCCCCTACTCGGACTT
TGTCTTCATGGAGGCCATGTTTCGGCAGGGTTATCTGTCACGCGGTGCGC
GTTCCGTGTATAATGAGCTCCGACAGAACACCATCGGGGAGCTGCTGAAG
CCGCATTTGGTTATCTACTTGGATCTGCCGGTCGATGCCGTGAAGAAGCA
GATCAAGGCACGCAATGTGGACTACGAGGTGCAGTCAAAGGTGTTCAGCG
ATGCCTACTTGAGCGATTTGGAGCAGCTGTACAAGCAGCAGTACCTTCAG
GACATCTCCACCCATGCCGAGCTGCTCATCTACGACTGGACAGCCGGCGG
TGAGACTGANGTTGTGGTGGAGGATATCGAACGCATCGACT

BO08569.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:27:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG6343-PA 1224 ND42-RA 1..925 17..941 4556 99.6 Plus
CG6343-PB 1224 ND42-RB 1..925 17..941 4556 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:39:28
Subject Length Description Subject Range Query Range Score Percent Strand
ND42-RC 1423 CG6343-RC 118..1042 17..941 4584 99.7 Plus
ND42-RB 1618 CG6343-RB 313..1237 17..941 4584 99.7 Plus
ND42-RA 1379 CG6343-RA 74..998 17..941 4584 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:39:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22028021..22028945 17..941 4584 99.7 Plus
Blast to na_te.dros performed on 2015-02-10 03:39:25 has no hits.

BO08569.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:50:52 Download gff for BO08569.5prime
Subject Subject Range Query Range Percent Splice Strand
ND42-PB 1..925 17..941 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:47:04 Download gff for BO08569.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6343-PB 1..925 17..941 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:45:11 Download gff for BO08569.5prime
Subject Subject Range Query Range Percent Splice Strand
ND42-RA 74..998 17..941 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:18:09 Download gff for BO08569.5prime
Subject Subject Range Query Range Percent Splice Strand
ND42-RA 74..998 17..941 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:18:09 Download gff for BO08569.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 22028016..22028945 8..941 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:45:11 Download gff for BO08569.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17853738..17854667 8..941 99   Plus

BO08569.complete Sequence

1255 bp (1255 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ631242

> BO08569.complete
GAAGTTATCAGTCGACATGACCGCCGTGTTCCGCGTAGGACTGGTGCGGC
TCGTCAGCCGCGCCACACAGTCGCCCAATCTACTCCAGGCGCAGACGAAT
GCCCTGCCTGCTGCCTTCCAGCAGCGATGCAGCATCTCCGGCAAGACGAT
GCGAGGTGGACCACGGGTGCCCAAGGCCGCCCCCTATCCGTACAAGACGA
AGAAGTACAGCGTGTTCAATGCTATTTTCGACAAGACCTCCAAGCGTTTT
GACGAGAACTCCAAGGTGATCTGTGTGGAGGGACCCATCGCGGCCGGCAA
GTCAAAGTTCGCCAAGGAACTGGCTGAGGAGCTGGACATGGAGTACTATC
CGGCAGTTGATCTGGACCTAATCTACATCAATTCGTACGGCTATGACATG
AGGAAGTTGGATCCTCAGTTGCCGCCCAGCTGCCGAAGCTACGATGTGCG
CAACTTCTGCCTGGATCCCAGCCACGATCTGGCTGCCCAGTTCCAGATTC
GCATGTACATGCTGCGCTATTCGCAGTACATTGATGCCCTGCAGCACGTC
CTTAGCACCGGCCAGGGTGTTGTCCTCGAGCGCAGCCCCTACTCGGACTT
TGTCTTCATGGAGGCCATGTTTCGGCAGGGTTATCTGTCACGCGGTGCGC
GTTCCGTGTATAATGAGCTCCGACAGAACACCATCGGGGAGCTGCTGAAG
CCGCATTTGGTTATCTACTTGGATCTGCCGGTCGATGCCGTGAAGAAGCA
GATCAAGGCACGCAATGTGGACTACGAGGTGCAGTCAAAGGTGTTCAGCG
ATGCCTACTTGAGCGATTTGGAGCAGCTGTACAAGCAGCAGTACCTCAAG
GACATCTCCACCCATGCCGAGCTGCTCATCTACGACTGGACAGCCGGCGG
TGAGACTGAGGTTGTGGTGGAGGATATCGAACGCATCGACTTCAACCAGT
TTGAGGCCGATATTCACAACAAGAAGATGCTCGACTGGCGTTTCCCGCTG
GAGGCCGAGTGGTGCGAAGCCCGTATCAAGTACTGCCATGAGAAGCCCGA
TCTGATGAATTACTTCAATGTGCCGCGTTTCGATGTCCCGGAGCTGGTGC
GCAGCGCTGACGACGGCAAAGTCTGGCGTGATGTCTGGTTCAATGCTCCC
GGCATGAAGTACCGTCCTGGCTACAATGCAGACATGGGCGACGAGGGTCT
CCTCACCAAGACGAAAATAGGCATCAACCAGGGCATCGCAAGCTTTCTAG
ACCAT

BO08569.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:52:33
Subject Length Description Subject Range Query Range Score Percent Strand
ND42-RC 1224 CG6343-PC 1..1221 17..1237 6105 100 Plus
ND42-RB 1224 CG6343-PB 1..1221 17..1237 6105 100 Plus
ND42-RA 1224 CG6343-PA 1..1221 17..1237 6105 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:52:34
Subject Length Description Subject Range Query Range Score Percent Strand
ND42-RC 1423 CG6343-RC 118..1338 17..1237 6105 100 Plus
ND42-RB 1618 CG6343-RB 313..1533 17..1237 6105 100 Plus
ND42-RA 1379 CG6343-RA 74..1294 17..1237 6105 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:52:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22028021..22029149 17..1145 5645 100 Plus
3R 32079331 3R 22029216..22029308 1145..1237 465 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:52:32 has no hits.

BO08569.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:11:38 Download gff for BO08569.complete
Subject Subject Range Query Range Percent Splice Strand
ND42-RB 1..1224 17..1238 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:32:28 Download gff for BO08569.complete
Subject Subject Range Query Range Percent Splice Strand
ND42-RB 231..1456 8..1237 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:42:31 Download gff for BO08569.complete
Subject Subject Range Query Range Percent Splice Strand
ND42-RA 74..1294 17..1239 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:11:38 Download gff for BO08569.complete
Subject Subject Range Query Range Percent Splice Strand
ND42-RB 231..1456 8..1237 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:33:02 Download gff for BO08569.complete
Subject Subject Range Query Range Percent Splice Strand
ND42-RA 74..1294 17..1239 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:33:02 Download gff for BO08569.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22029216..22029308 1145..1239 97   Plus
3R 22028021..22029148 17..1144 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:42:31 Download gff for BO08569.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17854938..17855030 1145..1239 97   Plus
arm_3R 17853743..17854870 17..1144 100 -> Plus

BO08569.pep Sequence

Translation from 16 to 1255

> BO08569.pep
MTAVFRVGLVRLVSRATQSPNLLQAQTNALPAAFQQRCSISGKTMRGGPR
VPKAAPYPYKTKKYSVFNAIFDKTSKRFDENSKVICVEGPIAAGKSKFAK
ELAEELDMEYYPAVDLDLIYINSYGYDMRKLDPQLPPSCRSYDVRNFCLD
PSHDLAAQFQIRMYMLRYSQYIDALQHVLSTGQGVVLERSPYSDFVFMEA
MFRQGYLSRGARSVYNELRQNTIGELLKPHLVIYLDLPVDAVKKQIKARN
VDYEVQSKVFSDAYLSDLEQLYKQQYLKDISTHAELLIYDWTAGGETEVV
VEDIERIDFNQFEADIHNKKMLDWRFPLEAEWCEARIKYCHEKPDLMNYF
NVPRFDVPELVRSADDGKVWRDVWFNAPGMKYRPGYNADMGDEGLLTKTK
IGINQGIASFLDH

BO08569.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:13:58
Subject Length Description Subject Range Query Range Score Percent Strand
ND42-PC 407 CG6343-PC 1..407 1..407 2146 100 Plus
ND42-PB 407 CG6343-PB 1..407 1..407 2146 100 Plus
ND42-PA 407 CG6343-PA 1..407 1..407 2146 100 Plus