Clone BO08570 Report

Search the DGRC for BO08570

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:85
Well:70
Vector:pDNR-Dual
Associated Gene/TranscriptCG8507-RA
Protein status:BO08570.pep: validated full length
Sequenced Size:1171

Clone Sequence Records

BO08570.3prime Sequence

917 bp (883 high quality bases) assembled on 2006-01-06

> BO08570.3prime
ATGGTCTAGAAAGCTTGCAAGCTCGGTGTGCTTGAAGATGGTTTTTTCAA
TGTTCTCCTGGAGCTTCTCCACTTTGCGAGTTTGCTTCTTCAGCTGATCC
TCCATTTCCTCAAAGCGGCTGCTTTTGTCCTTCACTTTTTCGCCCTTGTA
TTTCTCCTTTTGCAAAGCATGCTCGGCATGCAAGTGACGCAGCTTTAATA
GGCGACTTTCGAAGTGATGCAATTCGGTTTTAATGGACTCCAGTTCTTTA
ACCGTAAAATTGCTAGCCTGGGCCACTCGCCATAGACCCTGGACCTTGGG
TTCAATGAAGTCCTGACTGTGTGGACCGGAGGACACCAGGCGTTCCAGCC
TATCGTAGTGATCCTTGATGCCCGTGTGATGTCCTCGCAGAGTGTTAAGG
TCGTTCTCGAAACTCTTCACGTTTTGCGCATGGGTTTTGATGTCGTTCTC
ATTGACATCATTCGAAATCAGATTGTAGGTGTCCAAGTCTTCCGTGTTAA
TAGCATTTTCATGCTTGTCGGTGTCTACGGTGCCAATGTTTTCCAGCAAG
CTGTAGTACACATCCACTTTATCCTGGTGATGGTCAAACTCCTGTTTCAA
GGATTTCAATTCCTCTGCAGTAAATCCGGAAATCTCGGCCTTCTCCCAAA
GTCGGTTGAGTTTCTTGTCCTTGAAAAGACTCTTGTTTCTGTGTCGCTCC
TCGGCGTCGTGGAATTTCTTGTAGGGCTTAAGCTTCTCCGTATCCTGAGT
GTCGTCAAAATGCTCTAGCAGATCGTAGCTGCTCATGATGCCAATGAGCT
TGCGGCGCAGTTCGTCGGCCTTCAGCCCGTCTTTGTCCTTGTGCTGCGAG
TTGAGCTGCTTCCAAGCGATCTCCTCCTTATCGTGGATCTTGAGTTCCAT
GTACAGTGACTTGAGCT

BO08570.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:27:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG8507-PA 1140 CG8507-RA 239..1137 917..19 4495 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:47:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG8507-RA 1384 CG8507-RA 326..1224 917..19 4495 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:47:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9792396..9792758 506..144 1815 100 Minus
3R 32079331 3R 9792121..9792334 720..507 1070 100 Minus
3R 32079331 3R 9791862..9792061 917..718 1000 100 Minus
3R 32079331 3R 9792811..9792938 146..19 640 100 Minus
Blast to na_te.dros performed on 2015-02-11 09:47:57 has no hits.

BO08570.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:50:52 Download gff for BO08570.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8507-PA 239..1140 15..917 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:47:05 Download gff for BO08570.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8507-PA 239..1140 15..917 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:56:37 Download gff for BO08570.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8507-RA 326..1227 15..917 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:08:18 Download gff for BO08570.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8507-RA 326..1227 15..917 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:08:18 Download gff for BO08570.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 9791862..9792061 718..917 100 -> Minus
3R 9792124..9792334 507..717 100 -> Minus
3R 9792396..9792757 145..506 100 -> Minus
3R 9792813..9792941 15..144 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:56:37 Download gff for BO08570.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5617584..5617783 718..917 100 -> Minus
arm_3R 5617846..5618056 507..717 100 -> Minus
arm_3R 5618118..5618479 145..506 100 -> Minus
arm_3R 5618535..5618663 15..144 98   Minus

BO08570.5prime Sequence

870 bp (825 high quality bases) assembled on 2006-01-06

> BO08570.5prime
GAAGTTATCAGTCGACATGGTTAGGTCAGCTCTCGTTGTTGCAGCCATCG
CACTTTCCGTACTTATTGCACTGCAGGGCGTGGATGCCGACAAAAAGCAG
AGCAAGAAGTACAGCAAGGAGGCCAACGACCCGCATTTTCAGCAAGTAAA
GCAGGAGAAGTATGATCCGGATTTTAAGAGCATCCAGCGGCCATTTCGCA
TGGCCAAGTTGAATCTCGTGTGGGCCAAGGCGCAGAATCGCTTAACAGAG
CCCAAGCTCAAGTCACTGTACATGGAACTCAAGATCCACGATAAGGAGGA
GATCGCTTGGAAGCAGCTCAACTCGCAGCACAAGGACAAAGACGGGCTGA
AGGCCGACGAACTGCGCCGCAAGCTCATTGGCATCATGAGCAGCTACGAT
CTGCTAGAGCATTTTGACGACACTCAGGATACGGAGAAGCTTAAGCCCTA
CAAGAAATTCCACGACGCCGAGGAGCGACACAGAAACAAGAGTCTTTTCA
AGGACAAGAAACTCAACCGACTTTGGGAGAAGGCCGAGATTTCCGGATTT
ACTGCAGAGGAATTGAAATCCTTGAAACAGGAGTTTGACCATCACCAGGA
TAAAGTGGATGTGTACTACAGCTTGCTGGAAAACATTGGCACCGTAGACA
CCGACAAGCATGAAAATGCTATTAACACGGAAGACTTGGACACCTACAAT
CTGATTTCGAATGATGTCAATGAGAACGACATCAAAACCCATGCGCAAAA
CGTGAAGAGTTTCGAGAACGACCTTAACACTCTGCGAGGACATCACACGG
GCATCAAGGATCACTACGATAGGCTGGAACGCCTGGTGTCCTCCGGTCCA
CACAGTCAGGACTTCATTGA

BO08570.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:27:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG8507-PA 1140 CG8507-RA 1..854 17..870 4270 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:01:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG8507-RA 1384 CG8507-RA 88..941 17..870 4270 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:01:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9791570..9791791 17..238 1110 100 Plus
3R 32079331 3R 9791846..9792061 239..454 1080 100 Plus
3R 32079331 3R 9792121..9792334 452..665 1070 100 Plus
3R 32079331 3R 9792396..9792600 666..870 1025 100 Plus
Blast to na_te.dros performed on 2015-02-11 11:01:24 has no hits.

BO08570.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:50:53 Download gff for BO08570.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8507-PA 1..853 17..869 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:47:07 Download gff for BO08570.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8507-PA 1..853 17..869 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:02:38 Download gff for BO08570.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8507-RA 82..940 10..869 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:39:52 Download gff for BO08570.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8507-RA 82..940 10..869 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:39:52 Download gff for BO08570.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9791564..9791791 10..238 98 -> Plus
3R 9791846..9792061 239..454 100 -> Plus
3R 9792124..9792334 455..665 100 -> Plus
3R 9792396..9792599 666..869 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:02:38 Download gff for BO08570.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5617286..5617513 10..238 98 -> Plus
arm_3R 5617568..5617783 239..454 100 -> Plus
arm_3R 5617846..5618056 455..665 100 -> Plus
arm_3R 5618118..5618321 666..869 100   Plus

BO08570.complete Sequence

1171 bp (1171 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ631243

> BO08570.complete
GAAGTTATCAGTCGACATGGTTAGGTCAGCTCTCGTTGTTGCAGCCATCG
CACTTTCCGTACTTATTGCACTGCAGGGCGTGGATGCCGACAAAAAGCAG
AGCAAGAAGTACAGCAAGGAGGCCAACGACCCGCATTTTCAGCAAGTAAA
GCAGGAGAAGTATGATCCGGATTTTAAGAGCATCCAGCGGCCATTTCGCA
TGGCCAAGTTGAATCTCGTGTGGGCCAAGGCGCAGAATCGCTTAACAGAG
CCCAAGCTCAAGTCACTGTACATGGAACTCAAGATCCACGATAAGGAGGA
GATCGCTTGGAAGCAGCTCAACTCGCAGCACAAGGACAAAGACGGGCTGA
AGGCCGACGAACTGCGCCGCAAGCTCATTGGCATCATGAGCAGCTACGAT
CTGCTAGAGCATTTTGACGACACTCAGGATACGGAGAAGCTTAAGCCCTA
CAAGAAATTCCACGACGCCGAGGAGCGACACAGAAACAAGAGTCTTTTCA
AGGACAAGAAACTCAACCGACTTTGGGAGAAGGCCGAGATTTCCGGATTT
ACTGCAGAGGAATTGAAATCCTTGAAACAGGAGTTTGACCATCACCAGGA
TAAAGTGGATGTGTACTACAGCTTGCTGGAAAACATTGGCACCGTAGACA
CCGACAAGCATGAAAATGCTATTAACACGGAAGACTTGGACACCTACAAT
CTGATTTCGAATGATGTCAATGAGAACGACATCAAAACCCATGCGCAAAA
CGTGAAGAGTTTCGAGAACGACCTTAACACTCTGCGAGGACATCACACGG
GCATCAAGGATCACTACGATAGGCTGGAACGCCTGGTGTCCTCCGGTCCA
CACAGTCAGGACTTCATTGAACCCAAGGTCCAGGGTCTATGGCGAGTGGC
CCAGGCTAGCAATTTTACGGTTAAAGAACTGGAGTCCATTAAAACCGAAT
TGCATCACTTCGAAAGTCGCCTATTAAAGCTGCGTCACTTGCATGCCGAG
CATGCTTTGCAAAAGGAGAAATACAAGGGCGAAAAAGTGAAGGACAAAAG
CAGCCGCTTTGAGGAAATGGAGGATCAGCTGAAGAAGCAAACTCGCAAAG
TGGAGAAGCTCCAGGAGAACATTGAAAAAACCATCTTCAAGCACACCGAG
CTTGCAAGCTTTCTAGACCAT

BO08570.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:20:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG8507-RA 1140 CG8507-PA 1..1137 17..1153 5685 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:20:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG8507-RA 1384 CG8507-RA 88..1224 17..1153 5685 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:19:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9792396..9792758 666..1028 1815 100 Plus
3R 32079331 3R 9791570..9791791 17..238 1110 100 Plus
3R 32079331 3R 9791846..9792061 239..454 1080 100 Plus
3R 32079331 3R 9792121..9792334 452..665 1070 100 Plus
3R 32079331 3R 9792811..9792938 1026..1153 640 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:19:59 has no hits.

BO08570.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:11:39 Download gff for BO08570.complete
Subject Subject Range Query Range Percent Splice Strand
CG8507-RA 1..1140 17..1157 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:32:29 Download gff for BO08570.complete
Subject Subject Range Query Range Percent Splice Strand
CG8507-RA 95..1240 10..1157 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:49:35 Download gff for BO08570.complete
Subject Subject Range Query Range Percent Splice Strand
CG8507-RA 88..1224 17..1155 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:11:40 Download gff for BO08570.complete
Subject Subject Range Query Range Percent Splice Strand
CG8507-RA 95..1240 10..1157 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:16:01 Download gff for BO08570.complete
Subject Subject Range Query Range Percent Splice Strand
CG8507-RA 88..1224 17..1155 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:16:01 Download gff for BO08570.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9791570..9791791 17..238 100 -> Plus
3R 9791846..9792061 239..454 100 -> Plus
3R 9792124..9792334 455..665 100 -> Plus
3R 9792396..9792757 666..1027 100 -> Plus
3R 9792813..9792938 1028..1155 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:49:35 Download gff for BO08570.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5617846..5618056 455..665 100 -> Plus
arm_3R 5617292..5617513 17..238 100 -> Plus
arm_3R 5617568..5617783 239..454 100 -> Plus
arm_3R 5618118..5618479 666..1027 100 -> Plus
arm_3R 5618535..5618660 1028..1155 98   Plus

BO08570.pep Sequence

Translation from 16 to 1171

> BO08570.pep
MVRSALVVAAIALSVLIALQGVDADKKQSKKYSKEANDPHFQQVKQEKYD
PDFKSIQRPFRMAKLNLVWAKAQNRLTEPKLKSLYMELKIHDKEEIAWKQ
LNSQHKDKDGLKADELRRKLIGIMSSYDLLEHFDDTQDTEKLKPYKKFHD
AEERHRNKSLFKDKKLNRLWEKAEISGFTAEELKSLKQEFDHHQDKVDVY
YSLLENIGTVDTDKHENAINTEDLDTYNLISNDVNENDIKTHAQNVKSFE
NDLNTLRGHHTGIKDHYDRLERLVSSGPHSQDFIEPKVQGLWRVAQASNF
TVKELESIKTELHHFESRLLKLRHLHAEHALQKEKYKGEKVKDKSSRFEE
MEDQLKKQTRKVEKLQENIEKTIFKHTELASFLDH

BO08570.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:13:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG8507-PA 379 CG8507-PA 1..379 1..379 1965 100 Plus