Clone Sequence Records
BO08570.3prime Sequence
917 bp (883 high quality bases) assembled on 2006-01-06
> BO08570.3prime
ATGGTCTAGAAAGCTTGCAAGCTCGGTGTGCTTGAAGATGGTTTTTTCAA
TGTTCTCCTGGAGCTTCTCCACTTTGCGAGTTTGCTTCTTCAGCTGATCC
TCCATTTCCTCAAAGCGGCTGCTTTTGTCCTTCACTTTTTCGCCCTTGTA
TTTCTCCTTTTGCAAAGCATGCTCGGCATGCAAGTGACGCAGCTTTAATA
GGCGACTTTCGAAGTGATGCAATTCGGTTTTAATGGACTCCAGTTCTTTA
ACCGTAAAATTGCTAGCCTGGGCCACTCGCCATAGACCCTGGACCTTGGG
TTCAATGAAGTCCTGACTGTGTGGACCGGAGGACACCAGGCGTTCCAGCC
TATCGTAGTGATCCTTGATGCCCGTGTGATGTCCTCGCAGAGTGTTAAGG
TCGTTCTCGAAACTCTTCACGTTTTGCGCATGGGTTTTGATGTCGTTCTC
ATTGACATCATTCGAAATCAGATTGTAGGTGTCCAAGTCTTCCGTGTTAA
TAGCATTTTCATGCTTGTCGGTGTCTACGGTGCCAATGTTTTCCAGCAAG
CTGTAGTACACATCCACTTTATCCTGGTGATGGTCAAACTCCTGTTTCAA
GGATTTCAATTCCTCTGCAGTAAATCCGGAAATCTCGGCCTTCTCCCAAA
GTCGGTTGAGTTTCTTGTCCTTGAAAAGACTCTTGTTTCTGTGTCGCTCC
TCGGCGTCGTGGAATTTCTTGTAGGGCTTAAGCTTCTCCGTATCCTGAGT
GTCGTCAAAATGCTCTAGCAGATCGTAGCTGCTCATGATGCCAATGAGCT
TGCGGCGCAGTTCGTCGGCCTTCAGCCCGTCTTTGTCCTTGTGCTGCGAG
TTGAGCTGCTTCCAAGCGATCTCCTCCTTATCGTGGATCTTGAGTTCCAT
GTACAGTGACTTGAGCT
BO08570.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:27:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8507-PA | 1140 | CG8507-RA | 239..1137 | 917..19 | 4495 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:47:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8507-RA | 1384 | CG8507-RA | 326..1224 | 917..19 | 4495 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:47:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9792396..9792758 | 506..144 | 1815 | 100 | Minus |
3R | 32079331 | 3R | 9792121..9792334 | 720..507 | 1070 | 100 | Minus |
3R | 32079331 | 3R | 9791862..9792061 | 917..718 | 1000 | 100 | Minus |
3R | 32079331 | 3R | 9792811..9792938 | 146..19 | 640 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:47:57 has no hits.
BO08570.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:50:52 Download gff for
BO08570.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8507-PA | 239..1140 | 15..917 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:47:05 Download gff for
BO08570.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8507-PA | 239..1140 | 15..917 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:56:37 Download gff for
BO08570.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8507-RA | 326..1227 | 15..917 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:08:18 Download gff for
BO08570.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8507-RA | 326..1227 | 15..917 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:08:18 Download gff for
BO08570.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9791862..9792061 | 718..917 | 100 | -> | Minus |
3R | 9792124..9792334 | 507..717 | 100 | -> | Minus |
3R | 9792396..9792757 | 145..506 | 100 | -> | Minus |
3R | 9792813..9792941 | 15..144 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:56:37 Download gff for
BO08570.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5617584..5617783 | 718..917 | 100 | -> | Minus |
arm_3R | 5617846..5618056 | 507..717 | 100 | -> | Minus |
arm_3R | 5618118..5618479 | 145..506 | 100 | -> | Minus |
arm_3R | 5618535..5618663 | 15..144 | 98 | | Minus |
BO08570.5prime Sequence
870 bp (825 high quality bases) assembled on 2006-01-06
> BO08570.5prime
GAAGTTATCAGTCGACATGGTTAGGTCAGCTCTCGTTGTTGCAGCCATCG
CACTTTCCGTACTTATTGCACTGCAGGGCGTGGATGCCGACAAAAAGCAG
AGCAAGAAGTACAGCAAGGAGGCCAACGACCCGCATTTTCAGCAAGTAAA
GCAGGAGAAGTATGATCCGGATTTTAAGAGCATCCAGCGGCCATTTCGCA
TGGCCAAGTTGAATCTCGTGTGGGCCAAGGCGCAGAATCGCTTAACAGAG
CCCAAGCTCAAGTCACTGTACATGGAACTCAAGATCCACGATAAGGAGGA
GATCGCTTGGAAGCAGCTCAACTCGCAGCACAAGGACAAAGACGGGCTGA
AGGCCGACGAACTGCGCCGCAAGCTCATTGGCATCATGAGCAGCTACGAT
CTGCTAGAGCATTTTGACGACACTCAGGATACGGAGAAGCTTAAGCCCTA
CAAGAAATTCCACGACGCCGAGGAGCGACACAGAAACAAGAGTCTTTTCA
AGGACAAGAAACTCAACCGACTTTGGGAGAAGGCCGAGATTTCCGGATTT
ACTGCAGAGGAATTGAAATCCTTGAAACAGGAGTTTGACCATCACCAGGA
TAAAGTGGATGTGTACTACAGCTTGCTGGAAAACATTGGCACCGTAGACA
CCGACAAGCATGAAAATGCTATTAACACGGAAGACTTGGACACCTACAAT
CTGATTTCGAATGATGTCAATGAGAACGACATCAAAACCCATGCGCAAAA
CGTGAAGAGTTTCGAGAACGACCTTAACACTCTGCGAGGACATCACACGG
GCATCAAGGATCACTACGATAGGCTGGAACGCCTGGTGTCCTCCGGTCCA
CACAGTCAGGACTTCATTGA
BO08570.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:27:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8507-PA | 1140 | CG8507-RA | 1..854 | 17..870 | 4270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:01:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8507-RA | 1384 | CG8507-RA | 88..941 | 17..870 | 4270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:01:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9791570..9791791 | 17..238 | 1110 | 100 | Plus |
3R | 32079331 | 3R | 9791846..9792061 | 239..454 | 1080 | 100 | Plus |
3R | 32079331 | 3R | 9792121..9792334 | 452..665 | 1070 | 100 | Plus |
3R | 32079331 | 3R | 9792396..9792600 | 666..870 | 1025 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:01:24 has no hits.
BO08570.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:50:53 Download gff for
BO08570.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8507-PA | 1..853 | 17..869 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:47:07 Download gff for
BO08570.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8507-PA | 1..853 | 17..869 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:02:38 Download gff for
BO08570.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8507-RA | 82..940 | 10..869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:39:52 Download gff for
BO08570.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8507-RA | 82..940 | 10..869 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:39:52 Download gff for
BO08570.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9791564..9791791 | 10..238 | 98 | -> | Plus |
3R | 9791846..9792061 | 239..454 | 100 | -> | Plus |
3R | 9792124..9792334 | 455..665 | 100 | -> | Plus |
3R | 9792396..9792599 | 666..869 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:02:38 Download gff for
BO08570.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5617286..5617513 | 10..238 | 98 | -> | Plus |
arm_3R | 5617568..5617783 | 239..454 | 100 | -> | Plus |
arm_3R | 5617846..5618056 | 455..665 | 100 | -> | Plus |
arm_3R | 5618118..5618321 | 666..869 | 100 | | Plus |
BO08570.complete Sequence
1171 bp (1171 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631243
> BO08570.complete
GAAGTTATCAGTCGACATGGTTAGGTCAGCTCTCGTTGTTGCAGCCATCG
CACTTTCCGTACTTATTGCACTGCAGGGCGTGGATGCCGACAAAAAGCAG
AGCAAGAAGTACAGCAAGGAGGCCAACGACCCGCATTTTCAGCAAGTAAA
GCAGGAGAAGTATGATCCGGATTTTAAGAGCATCCAGCGGCCATTTCGCA
TGGCCAAGTTGAATCTCGTGTGGGCCAAGGCGCAGAATCGCTTAACAGAG
CCCAAGCTCAAGTCACTGTACATGGAACTCAAGATCCACGATAAGGAGGA
GATCGCTTGGAAGCAGCTCAACTCGCAGCACAAGGACAAAGACGGGCTGA
AGGCCGACGAACTGCGCCGCAAGCTCATTGGCATCATGAGCAGCTACGAT
CTGCTAGAGCATTTTGACGACACTCAGGATACGGAGAAGCTTAAGCCCTA
CAAGAAATTCCACGACGCCGAGGAGCGACACAGAAACAAGAGTCTTTTCA
AGGACAAGAAACTCAACCGACTTTGGGAGAAGGCCGAGATTTCCGGATTT
ACTGCAGAGGAATTGAAATCCTTGAAACAGGAGTTTGACCATCACCAGGA
TAAAGTGGATGTGTACTACAGCTTGCTGGAAAACATTGGCACCGTAGACA
CCGACAAGCATGAAAATGCTATTAACACGGAAGACTTGGACACCTACAAT
CTGATTTCGAATGATGTCAATGAGAACGACATCAAAACCCATGCGCAAAA
CGTGAAGAGTTTCGAGAACGACCTTAACACTCTGCGAGGACATCACACGG
GCATCAAGGATCACTACGATAGGCTGGAACGCCTGGTGTCCTCCGGTCCA
CACAGTCAGGACTTCATTGAACCCAAGGTCCAGGGTCTATGGCGAGTGGC
CCAGGCTAGCAATTTTACGGTTAAAGAACTGGAGTCCATTAAAACCGAAT
TGCATCACTTCGAAAGTCGCCTATTAAAGCTGCGTCACTTGCATGCCGAG
CATGCTTTGCAAAAGGAGAAATACAAGGGCGAAAAAGTGAAGGACAAAAG
CAGCCGCTTTGAGGAAATGGAGGATCAGCTGAAGAAGCAAACTCGCAAAG
TGGAGAAGCTCCAGGAGAACATTGAAAAAACCATCTTCAAGCACACCGAG
CTTGCAAGCTTTCTAGACCAT
BO08570.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:20:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8507-RA | 1140 | CG8507-PA | 1..1137 | 17..1153 | 5685 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:20:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8507-RA | 1384 | CG8507-RA | 88..1224 | 17..1153 | 5685 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:19:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9792396..9792758 | 666..1028 | 1815 | 100 | Plus |
3R | 32079331 | 3R | 9791570..9791791 | 17..238 | 1110 | 100 | Plus |
3R | 32079331 | 3R | 9791846..9792061 | 239..454 | 1080 | 100 | Plus |
3R | 32079331 | 3R | 9792121..9792334 | 452..665 | 1070 | 100 | Plus |
3R | 32079331 | 3R | 9792811..9792938 | 1026..1153 | 640 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:19:59 has no hits.
BO08570.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:11:39 Download gff for
BO08570.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8507-RA | 1..1140 | 17..1157 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:32:29 Download gff for
BO08570.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8507-RA | 95..1240 | 10..1157 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:49:35 Download gff for
BO08570.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8507-RA | 88..1224 | 17..1155 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:11:40 Download gff for
BO08570.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8507-RA | 95..1240 | 10..1157 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:16:01 Download gff for
BO08570.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8507-RA | 88..1224 | 17..1155 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:16:01 Download gff for
BO08570.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9791570..9791791 | 17..238 | 100 | -> | Plus |
3R | 9791846..9792061 | 239..454 | 100 | -> | Plus |
3R | 9792124..9792334 | 455..665 | 100 | -> | Plus |
3R | 9792396..9792757 | 666..1027 | 100 | -> | Plus |
3R | 9792813..9792938 | 1028..1155 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:49:35 Download gff for
BO08570.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5617846..5618056 | 455..665 | 100 | -> | Plus |
arm_3R | 5617292..5617513 | 17..238 | 100 | -> | Plus |
arm_3R | 5617568..5617783 | 239..454 | 100 | -> | Plus |
arm_3R | 5618118..5618479 | 666..1027 | 100 | -> | Plus |
arm_3R | 5618535..5618660 | 1028..1155 | 98 | | Plus |
BO08570.pep Sequence
Translation from 16 to 1171
> BO08570.pep
MVRSALVVAAIALSVLIALQGVDADKKQSKKYSKEANDPHFQQVKQEKYD
PDFKSIQRPFRMAKLNLVWAKAQNRLTEPKLKSLYMELKIHDKEEIAWKQ
LNSQHKDKDGLKADELRRKLIGIMSSYDLLEHFDDTQDTEKLKPYKKFHD
AEERHRNKSLFKDKKLNRLWEKAEISGFTAEELKSLKQEFDHHQDKVDVY
YSLLENIGTVDTDKHENAINTEDLDTYNLISNDVNENDIKTHAQNVKSFE
NDLNTLRGHHTGIKDHYDRLERLVSSGPHSQDFIEPKVQGLWRVAQASNF
TVKELESIKTELHHFESRLLKLRHLHAEHALQKEKYKGEKVKDKSSRFEE
MEDQLKKQTRKVEKLQENIEKTIFKHTELASFLDH
BO08570.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:13:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8507-PA | 379 | CG8507-PA | 1..379 | 1..379 | 1965 | 100 | Plus |