Clone Sequence Records
BO08572.3prime Sequence
837 bp (779 high quality bases) assembled on 2006-01-06
> BO08572.3prime
ATGGTCTAGAAAGCTTGCTAGCAGAGGCTCATTCTCTATCTTGACATCGC
ACTCAACCATGGAGCTGTCGACATAGTCAAACGAAGTTGGTGTTTTTCGG
CTACTGATTTGGTAGCTGGAATTGGATAGATGGTACTGGGATTTCTCCAG
CTGAGTGGCAAAACTGGAATTCGGGGCTGGTGTTAGTTTGGGCATGCTGC
GCTCTAGAACGTCTTCGGGTCCCGCCGCCGCGAGCATGTGCTGATCCTCC
TCCCTGAGTTCCACCAGAACGCGCGCCATCTCCATTCGAAACTTAAGATT
GCTAATGGCTGACAGAGACTTTACGTGCGGCATCATGCTCATCAAGAAAC
TCAAGTCCGAATCGTTCTTTAGATCGGGTTCAGTGGTAGACTTTGACGCC
TGGCTGGCGTATCCATTCAATAAGGGGACATCGTTAGACGGCGAAGTTTT
CCTCCGACGTCCTCTCTTCGAAGGCGGGGGTGGACGTGGCAGGAATTGTT
GGTGGCGCGGCAAGTGTATGGGCAATGTGGGCGATAGATCCTGATCGGAA
CGATGGGCGCCCGAGGATGAAGAATCCAAAGGCTTGATCAGCGAGCCTTT
ATCCGAGCCAGAGTCCTGGGGCACTGACGGCTCCCGCTTAAATATGTCCT
CGATGATTTCAAAGTCAACAGAGTCATCATTGTCCAAATCCAAATCGATA
GCGAAGTCAACCAGTCGGGTGGGCTCGAAGACTTCCGGCTGCTCGGTGTT
CATCACGAAGGGCTCTGGTGGAAAGGGCACCAGGCCCTCCGGATCGAAGA
TTTGGCGCATGAACTCCAGTGAGCGAAAGTATGGCCA
BO08572.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:27:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11723-PA | 1053 | CG11723-RA | 232..1050 | 837..19 | 4095 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 14:46:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11723-RB | 1907 | CG11723-RB | 483..1301 | 837..19 | 4095 | 100 | Minus |
| CG11723-RA | 1707 | CG11723-RA | 483..1301 | 837..19 | 4095 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 14:46:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2145903..2146721 | 19..837 | 4095 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 14:46:21 has no hits.
BO08572.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:50:54 Download gff for
BO08572.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11723-PA | 233..1053 | 16..836 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:47:08 Download gff for
BO08572.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11723-PA | 233..1053 | 16..836 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:59:19 Download gff for
BO08572.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11723-RA | 484..1310 | 11..836 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:39:13 Download gff for
BO08572.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11723-RA | 484..1310 | 11..836 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:39:13 Download gff for
BO08572.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2145894..2146720 | 11..836 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:59:19 Download gff for
BO08572.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2145894..2146720 | 11..836 | 99 | | Plus |
BO08572.5prime Sequence
938 bp (822 high quality bases) assembled on 2006-01-06
> BO08572.5prime
GAAGTTATCAGTCGACATGAAATCAGATAACTACCGTCTCATACAGGAGG
TGTCCAAGCGGCGGTGCCTGTGGGACACAAACATGTCCATTTCGTACCGC
AACCAGGACGCAGCTCTCCAGTGGGCGAGTGTCGCGCAGATAATGCAGCA
GGATGTCTCGATCTGCAAGAAACGTTTCAAGGGAATGCGGGACAGCTACC
GGGCAGAGGTGCGCAAGATACAGCAGAAACGAATCGAGATGTCCCACTGG
CCATACTTTCGCTCACTGGAGTTCATGCGCCAAATCTTCGATCCGGAGGG
CCTGGTGCCCTTTCCACCAGAGCCCTTCGTGATGAACACCGAGCAGCCGG
AAGTCTTCGAGCCCACCCGACTGGTTGACTTCGCTATCGATTTGGATTTG
GACAATGATGACTCTGTTGACTTTGAAATCATCGAGGACATATTTAAGCG
GGAGCCGTCAGTGCCCCAGGACTCTGGCTCGGATAAAGGCTCGCTGATCA
AGCCTTTGGATTCTTCATCCTCGGGCGCCCATCGTTCCGATCAGGATCTA
TCGCCCACATTGCCCATACACTTGCCGCGCCACCAACAATTCCTGCCACG
TCCACCCCCGCCTTCGAAGAGAGGACGTCGGAGGAAAACTTCGCCGTCTA
ACGATGTCCCCTTATTGAATGGATACGCCAGCCAGGCGTCAAAGTCTACC
ACTGAACCCGATCTAAAGAACGATTCGGACTTGAGTTTCTTGATGAGCAT
GATGCCGCACGTAAAGTCTCTGTCAGCCATTAGCAATCTTAAGTTTCGAA
TGGAGATGGCGCGCGTTCTGGTGGAACTCAGGAAGGAGGATCAGCACATG
CTCGCGGCGGCGGGACCCGAAGACGTTCTAGAGCGCAGCATGCCCAAACT
AACACAAGCCCCCGATTTCAGTTTTTGCACTCAGCTGG
BO08572.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:27:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11723-PA | 1053 | CG11723-RA | 1..922 | 17..938 | 4435 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:09:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11723-RB | 1907 | CG11723-RB | 251..1173 | 16..938 | 4510 | 99.2 | Plus |
| CG11723-RA | 1707 | CG11723-RA | 251..1173 | 16..938 | 4510 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:09:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2146031..2146814 | 938..155 | 3815 | 99.1 | Minus |
| 2L | 23513712 | 2L | 2146886..2147025 | 155..16 | 700 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:09:09 has no hits.
BO08572.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:50:55 Download gff for
BO08572.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11723-PA | 1..922 | 17..938 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:47:09 Download gff for
BO08572.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11723-PA | 1..922 | 17..938 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:13:55 Download gff for
BO08572.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11723-RA | 248..1173 | 13..938 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:45:08 Download gff for
BO08572.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11723-RA | 248..1173 | 13..938 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:45:08 Download gff for
BO08572.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2146031..2146813 | 156..938 | 99 | <- | Minus |
| 2L | 2146886..2147028 | 13..155 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:13:55 Download gff for
BO08572.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2146031..2146813 | 156..938 | 99 | <- | Minus |
| arm_2L | 2146886..2147028 | 13..155 | 99 | | Minus |
BO08572.complete Sequence
1084 bp (1084 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631244
> BO08572.complete
GAAGTTATCAGTCGACATGAAATCAGATAACTACCGTCTCATACAGGAGG
TGTCCAAGCGGCGGTGCCTGTGGGACACAAACATGTCCATTTCGTACCGC
AACCAGGACGCAGCTCTCCAGTGGGCGAGTGTCGCGCAGATAATGCAGCA
GGATGTCTCGATCTGCAAGAAACGTTTCAAGGGAATGCGGGACAGCTACC
GGGCAGAGGTGCGCAAGATACAGCAGAAACGAATCGAGATGTCCCACTGG
CCATACTTTCGCTCACTGGAGTTCATGCGCCAAATCTTCGATCCGGAGGG
CCTGGTGCCCTTTCCACCAGAGCCCTTCGTGATGAACACCGAGCAGCCGG
AAGTCTTCGAGCCCACCCGACTGGTTGACTTCGCTATCGATTTGGATTTG
GACAATGATGACTCTGTTGACTTTGAAATCATCGAGGACATATTTAAGCG
GGAGCCGTCAGTGCCCCAGGACTCTGGCTCGGATAAAGGCTCGCTGATCA
AGCCTTTGGATTCTTCATCCTCGGGCGCCCATCGTTCCGATCAGGATCTA
TCGCCCACATTGCCCATACACTTGCCGCGCCACCAACAATTCCTGCCACG
TCCACCCCCGCCTTCGAAGAGAGGACGTCGGAGGAAAACTTCGCCGTCTA
ACGATGTCCCCTTATTGAATGGATACGCCAGCCAGGCGTCAAAGTCTACC
ACTGAACCCGATCTAAAGAACGATTCGGACTTGAGTTTCTTGATGAGCAT
GATGCCGCACGTAAAGTCTCTGTCAGCCATTAGCAATCTTAAGTTTCGAA
TGGAGATGGCGCGCGTTCTGGTGGAACTCAGGGAGGAGGATCAGCACATG
CTCGCGGCGGCGGGACCCGAAGACGTTCTAGAGCGCAGCATGCCCAAACT
AACACCAGCCCCGAATTCCAGTTTTGCCACTCAGCTGGAGAAATCCCAGT
ACCATCTATCCAATTCCAGCTACCAAATCAGTAGCCGAAAAACACCAACT
TCGTTTGACTATGTCGACAGCTCCATGGTTGAGTGCGATGTCAAGATAGA
GAATGAGCCTCTGCTAGCAAGCTTTCTAGACCAT
BO08572.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:19:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11723-RB | 1053 | CG11723-PB | 1..1050 | 17..1066 | 5250 | 100 | Plus |
| CG11723-RA | 1053 | CG11723-PA | 1..1050 | 17..1066 | 5250 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:20:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11723-RB | 1907 | CG11723-RB | 251..1301 | 16..1066 | 5255 | 100 | Plus |
| CG11723-RA | 1707 | CG11723-RA | 251..1301 | 16..1066 | 5255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:19:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2145903..2146814 | 1066..155 | 4560 | 100 | Minus |
| 2L | 23513712 | 2L | 2146886..2147025 | 155..16 | 700 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:19:58 has no hits.
BO08572.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:11:42 Download gff for
BO08572.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11723-RA | 1..1053 | 17..1069 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:32:31 Download gff for
BO08572.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11723-RA | 260..1322 | 13..1074 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:39:50 Download gff for
BO08572.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11723-RA | 252..1301 | 17..1068 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:11:42 Download gff for
BO08572.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11723-RA | 260..1322 | 13..1074 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:05:16 Download gff for
BO08572.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11723-RA | 252..1301 | 17..1068 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:05:16 Download gff for
BO08572.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2145900..2146813 | 156..1068 | 99 | <- | Minus |
| 2L | 2146886..2147024 | 17..155 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:39:50 Download gff for
BO08572.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2145900..2146813 | 156..1068 | 99 | <- | Minus |
| arm_2L | 2146886..2147024 | 17..155 | 100 | | Minus |
BO08572.pep Sequence
Translation from 16 to 1084
> BO08572.pep
MKSDNYRLIQEVSKRRCLWDTNMSISYRNQDAALQWASVAQIMQQDVSIC
KKRFKGMRDSYRAEVRKIQQKRIEMSHWPYFRSLEFMRQIFDPEGLVPFP
PEPFVMNTEQPEVFEPTRLVDFAIDLDLDNDDSVDFEIIEDIFKREPSVP
QDSGSDKGSLIKPLDSSSSGAHRSDQDLSPTLPIHLPRHQQFLPRPPPPS
KRGRRRKTSPSNDVPLLNGYASQASKSTTEPDLKNDSDLSFLMSMMPHVK
SLSAISNLKFRMEMARVLVELREEDQHMLAAAGPEDVLERSMPKLTPAPN
SSFATQLEKSQYHLSNSSYQISSRKTPTSFDYVDSSMVECDVKIENEPLL
ASFLDH
BO08572.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:13:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11723-PB | 350 | CG11723-PB | 1..350 | 1..350 | 1814 | 100 | Plus |
| CG11723-PA | 350 | CG11723-PA | 1..350 | 1..350 | 1814 | 100 | Plus |
