Clone Sequence Records
BO08578.3prime Sequence
853 bp (834 high quality bases) assembled on 2006-01-06
> BO08578.3prime
ATGGTCTAGAAAGCTTGCATCGATGCGCTTGAAAGTTCTCCCCGTTATAG
TTTTCTTCTCCGTGTTTTTGGGCTCTGGCCTTGCACGATTTAGCACCTTG
AGGAAATCCGAGGTTTTTGCTCGCATGCGCGAATGAATGTAAGCCTTTGA
ACACTTAATGTGGTAGTGCAAGTAATCTCGGAACATGTGAATTAAGTTAA
TGGTATTGTCCCTTGTTTCTTTGTTGGTATGCCGAGGGAAGAGTACGAAT
GTGACATAGCCAATGTTGTCGCCCACCCTAGCGTCCGTGTTGGCCAATTC
CAATGGTGGTTCTCGGTGCGAAAAGAGCACTTGTGGTGCGGTGTGCGAGG
CACGCCGACCTTCCCTCAATTCCTGCATAAATACTTTGCCGATAATGACA
TCGTCTTCGTCCCGGAAAATGGTACTAAAGACGACGGTGACACGATCAGG
CTTGGCTTCCACATATAAAGTCTCATCGTTGCGGTAGTTAATGACGGCAC
GCTTTTGGCCCTCTTCGCCCTGCTCCTGATAGTCAAAATACTTTTCAAAA
ACCGATGCGAAACAGTTGCGCTTCAGCAGTCCGATTCTCTTTGCGATTTG
CTCGCAGTCCTCGGGAATCTCCTCCAGGTTGATAAGTACGGAAACATTGT
AGCCTTCTTCCGTGTCTGTAAGCAGACTGCCATATTCACGCTTCAGCAAC
TCGTCGGCTCCATGTTCTTGCAGCTGTTTGTAGAACTTCAGCGATATGCT
GATCCGAACTTTTGTTTTATCGCCATTCACATTGGAAATGTGATAAAGGA
CGCCGTCGAAGTCTGCTATTCGTATGTCTATCGATTCAGGCTTCAGTCCA
GCC
BO08578.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:27:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10954-PA | 906 | Arc-p34-RA | 69..903 | 853..19 | 4175 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:51:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arpc2-RB | 1974 | CG10954-RB | 606..1440 | 853..19 | 4175 | 100 | Minus |
Arpc2-RA | 1941 | CG10954-RA | 573..1407 | 853..19 | 4175 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:51:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20420897..20421117 | 466..246 | 1105 | 100 | Minus |
2L | 23513712 | 2L | 20420646..20420834 | 655..467 | 945 | 100 | Minus |
2L | 23513712 | 2L | 20422300..20422412 | 155..43 | 565 | 100 | Minus |
2L | 23513712 | 2L | 20420489..20420590 | 754..653 | 510 | 100 | Minus |
2L | 23513712 | 2L | 20420318..20420412 | 848..754 | 475 | 100 | Minus |
2L | 23513712 | 2L | 20422144..20422236 | 246..154 | 465 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:51:09 has no hits.
BO08578.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:51:04 Download gff for
BO08578.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10954-PA | 69..906 | 16..853 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:47:21 Download gff for
BO08578.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10954-PA | 69..906 | 16..853 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:15:06 Download gff for
BO08578.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arpc2-RA | 602..1436 | 19..853 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:22:45 Download gff for
BO08578.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arpc2-RA | 573..1407 | 19..853 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:22:45 Download gff for
BO08578.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20420313..20420412 | 754..853 | 96 | -> | Minus |
2L | 20420490..20420589 | 654..753 | 100 | -> | Minus |
2L | 20420648..20420834 | 467..653 | 100 | -> | Minus |
2L | 20420897..20421117 | 246..466 | 100 | -> | Minus |
2L | 20422145..20422236 | 154..245 | 100 | -> | Minus |
2L | 20422302..20422411 | 44..153 | 100 | -> | Minus |
2L | 20422469..20422493 | 19..43 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:15:06 Download gff for
BO08578.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20422145..20422236 | 154..245 | 100 | -> | Minus |
arm_2L | 20422302..20422411 | 44..153 | 100 | -> | Minus |
arm_2L | 20422469..20422493 | 19..43 | 100 | | Minus |
arm_2L | 20420313..20420412 | 754..853 | 96 | -> | Minus |
arm_2L | 20420490..20420589 | 654..753 | 100 | -> | Minus |
arm_2L | 20420648..20420834 | 467..653 | 100 | -> | Minus |
arm_2L | 20420897..20421117 | 246..466 | 100 | -> | Minus |
BO08578.5prime Sequence
897 bp (815 high quality bases) assembled on 2006-01-06
> BO08578.5prime
GAAGTTATCAGTCGACATGATCCTGCTGGAAATCAATAATCGGATTATCG
AGGAGACGCTGCTGGTCAAATACCGTAATGCCCAGGCTGGACTGAAGCCT
GAATCGATAGACATACGAATAGCAGACTTCGACGGCGTCCTTTATCACAT
TTCCAATGTGAATGGCGATAAAACAAAAGTTCGGATCAGCATATCGCTGA
AGTTCTACAAACAGCTGCAAGAACATGGAGCCGACGAGTTGCTGAAGCGT
GAATATGGCAGTCTGCTTACAGACACGGAAGAAGGCTACAATGTTTCCGT
ACTTATCAACCTGGAGGAGATTCCCGAGGACTGCGAGCAAATCGCAAAGA
GAATCGGACTGCTGAAGCGCAACTGTTTCGCATCGGTTTTTGAAAAGTAT
TTTGACTATCAGGAGCAGGGCGAAGAGGGCCAAAAGCGTGCCGTCATTAA
CTACCGCAACGATGAGACTTTATATGTGGAAGCCAAGCCTGATCGTGTCA
CCGTCGTCTTTAGTACCATTTTCCGGGACGAAGACGATGTCATTATCGGC
AAAGTATTTATGCAGGAATTGAGGGAAGGTCGGCGTGCCTCGCACACCGC
ACCACAAGTGCTCTTTTCGCACCGAGAACCACCATTGGAATTGGCCAACA
CGGACGCTAGGGTGGGCGACAACATTGGCTATGTCACATTCGTACTCTTC
CCTCGGCATACCAACAAAGAAACAAGGGACAATACCATTAACTTAATTCA
CATGTTCCGAGATTACTTGCACTACCACATTAAGTGTTCAAAGGCTTACA
TTCATTCGCGCATGCGAGCAAAAACCTCGGATTTCCTCAAGGTGCTAAAT
CGTGCAAGGCCAGAGCCCAAAAACACGGAGAAGAAACTATAACGGGG
BO08578.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:27:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10954-PA | 906 | Arc-p34-RA | 1..870 | 17..886 | 4350 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:09:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arpc2-RB | 1974 | CG10954-RB | 537..1419 | 16..897 | 4390 | 99.9 | Plus |
Arpc2-RA | 1941 | CG10954-RA | 504..1386 | 16..897 | 4390 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:09:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20420897..20421117 | 472..692 | 1105 | 100 | Plus |
2L | 23513712 | 2L | 20420646..20420834 | 283..471 | 945 | 100 | Plus |
2L | 23513712 | 2L | 20422300..20422403 | 783..886 | 520 | 100 | Plus |
2L | 23513712 | 2L | 20420489..20420590 | 184..285 | 510 | 100 | Plus |
2L | 23513712 | 2L | 20420318..20420412 | 90..184 | 475 | 100 | Plus |
2L | 23513712 | 2L | 20422144..20422236 | 692..784 | 465 | 100 | Plus |
2L | 23513712 | 2L | 20417593..20417667 | 16..90 | 375 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:09:23 has no hits.
BO08578.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:51:05 Download gff for
BO08578.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10954-PA | 1..882 | 17..897 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:47:22 Download gff for
BO08578.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10954-PA | 1..882 | 17..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:20:53 Download gff for
BO08578.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arpc2-RA | 525..1415 | 8..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:54:05 Download gff for
BO08578.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arpc2-RA | 496..1386 | 8..897 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:54:05 Download gff for
BO08578.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20422145..20422236 | 693..784 | 100 | -> | Plus |
2L | 20422302..20422414 | 785..897 | 97 | | Plus |
2L | 20417585..20417667 | 8..90 | 96 | -> | Plus |
2L | 20420319..20420412 | 91..184 | 100 | -> | Plus |
2L | 20420490..20420589 | 185..284 | 100 | -> | Plus |
2L | 20420648..20420834 | 285..471 | 100 | -> | Plus |
2L | 20420897..20421117 | 472..692 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:20:53 Download gff for
BO08578.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20417585..20417667 | 8..90 | 96 | -> | Plus |
arm_2L | 20420319..20420412 | 91..184 | 100 | -> | Plus |
arm_2L | 20420490..20420589 | 185..284 | 100 | -> | Plus |
arm_2L | 20420648..20420834 | 285..471 | 100 | -> | Plus |
arm_2L | 20420897..20421117 | 472..692 | 100 | -> | Plus |
arm_2L | 20422145..20422236 | 693..784 | 100 | -> | Plus |
arm_2L | 20422302..20422414 | 785..897 | 97 | | Plus |
BO08578.complete Sequence
937 bp (937 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631245
> BO08578.complete
GAAGTTATCAGTCGACATGATCCTGCTGGAAATCAATAATCGGATTATCG
AGGAGACGCTGCTGGTCAAATACCGTAATGCCCAGGCTGGACTGAAGCCT
GAATCGATAGACATACGAATAGCAGACTTCGACGGCGTCCTTTATCACAT
TTCCAATGTGAATGGCGATAAAACAAAAGTTCGGATCAGCATATCGCTGA
AGTTCTACAAACAGCTGCAAGAACATGGAGCCGACGAGTTGCTGAAGCGT
GAATATGGCAGTCTGCTTACAGACACGGAAGAAGGCTACAATGTTTCCGT
ACTTATCAACCTGGAGGAGATTCCCGAGGACTGCGAGCAAATCGCAAAGA
GAATCGGACTGCTGAAGCGCAACTGTTTCGCATCGGTTTTTGAAAAGTAT
TTTGACTATCAGGAGCAGGGCGAAGAGGGCCAAAAGCGTGCCGTCATTAA
CTACCGCAACGATGAGACTTTATATGTGGAAGCCAAGCCTGATCGTGTCA
CCGTCGTCTTTAGTACCATTTTCCGGGACGAAGACGATGTCATTATCGGC
AAAGTATTTATGCAGGAATTGAGGGAAGGTCGGCGTGCCTCGCACACCGC
ACCACAAGTGCTCTTTTCGCACCGAGAACCACCATTGGAATTGGCCAACA
CGGACGCTAGGGTGGGCGACAACATTGGCTATGTCACATTCGTACTCTTC
CCTCGGCATACCAACAAAGAAACAAGGGACAATACCATTAACTTAATTCA
CATGTTCCGAGATTACTTGCACTACCACATTAAGTGTTCAAAGGCTTACA
TTCATTCGCGCATGCGAGCAAAAACCTCGGATTTCCTCAAGGTGCTAAAT
CGTGCAAGGCCAGAGCCCAAAAACACGGAGAAGAAAACTATAACGGGGAG
AACTTTCAAGCGCATCGATGCAAGCTTTCTAGACCAT
BO08578.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:53:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arpc2-RB | 906 | CG10954-PB | 1..903 | 17..919 | 4515 | 100 | Plus |
Arpc2-RA | 906 | CG10954-PA | 1..903 | 17..919 | 4515 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:53:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arpc2-RB | 1974 | CG10954-RB | 537..1440 | 16..919 | 4520 | 100 | Plus |
Arpc2-RA | 1941 | CG10954-RA | 504..1407 | 16..919 | 4520 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:53:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20420897..20421117 | 472..692 | 1105 | 100 | Plus |
2L | 23513712 | 2L | 20420646..20420834 | 283..471 | 945 | 100 | Plus |
2L | 23513712 | 2L | 20422300..20422412 | 783..895 | 565 | 100 | Plus |
2L | 23513712 | 2L | 20420489..20420590 | 184..285 | 510 | 100 | Plus |
2L | 23513712 | 2L | 20420318..20420412 | 90..184 | 475 | 100 | Plus |
2L | 23513712 | 2L | 20422144..20422236 | 692..784 | 465 | 100 | Plus |
2L | 23513712 | 2L | 20417593..20417667 | 16..90 | 375 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:53:12 has no hits.
BO08578.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:11:23 Download gff for
BO08578.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arc-p34-RA | 1..906 | 17..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:32:10 Download gff for
BO08578.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arc-p34-RA | 525..1436 | 8..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:34:44 Download gff for
BO08578.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arpc2-RA | 534..1436 | 17..921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:11:24 Download gff for
BO08578.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arc-p34-RA | 525..1436 | 8..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:28:52 Download gff for
BO08578.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arpc2-RA | 505..1407 | 17..921 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:28:52 Download gff for
BO08578.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20417594..20417667 | 17..90 | 100 | -> | Plus |
2L | 20420319..20420412 | 91..184 | 100 | -> | Plus |
2L | 20420490..20420589 | 185..284 | 100 | -> | Plus |
2L | 20420648..20420834 | 285..471 | 100 | -> | Plus |
2L | 20420897..20421117 | 472..692 | 100 | -> | Plus |
2L | 20422145..20422236 | 693..784 | 100 | -> | Plus |
2L | 20422302..20422411 | 785..894 | 100 | -> | Plus |
2L | 20422469..20422493 | 895..921 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:34:44 Download gff for
BO08578.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20420319..20420412 | 91..184 | 100 | -> | Plus |
arm_2L | 20420490..20420589 | 185..284 | 100 | -> | Plus |
arm_2L | 20420648..20420834 | 285..471 | 100 | -> | Plus |
arm_2L | 20417594..20417667 | 17..90 | 100 | -> | Plus |
arm_2L | 20420897..20421117 | 472..692 | 100 | -> | Plus |
arm_2L | 20422145..20422236 | 693..784 | 100 | -> | Plus |
arm_2L | 20422302..20422411 | 785..894 | 100 | -> | Plus |
arm_2L | 20422469..20422493 | 895..921 | 92 | | Plus |
BO08578.pep Sequence
Translation from 16 to 937
> BO08578.pep
MILLEINNRIIEETLLVKYRNAQAGLKPESIDIRIADFDGVLYHISNVNG
DKTKVRISISLKFYKQLQEHGADELLKREYGSLLTDTEEGYNVSVLINLE
EIPEDCEQIAKRIGLLKRNCFASVFEKYFDYQEQGEEGQKRAVINYRNDE
TLYVEAKPDRVTVVFSTIFRDEDDVIIGKVFMQELREGRRASHTAPQVLF
SHREPPLELANTDARVGDNIGYVTFVLFPRHTNKETRDNTINLIHMFRDY
LHYHIKCSKAYIHSRMRAKTSDFLKVLNRARPEPKNTEKKTITGRTFKRI
DASFLDH
BO08578.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:19:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arpc2-PB | 301 | CG10954-PB | 1..301 | 1..301 | 1554 | 100 | Plus |
Arpc2-PA | 301 | CG10954-PA | 1..301 | 1..301 | 1554 | 100 | Plus |