Clone BO08583 Report

Search the DGRC for BO08583

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:85
Well:83
Vector:pDNR-Dual
Associated Gene/TranscriptCortactin-RA
Protein status:BO08583.pep: validated full length
Sequenced Size:1711

Clone Sequence Records

BO08583.3prime Sequence

942 bp (836 high quality bases) assembled on 2006-01-06

> BO08583.3prime
ATGGTCTAGAAAGCTTGCTGAGTTCTGTCCCACCACCTGCACGTAGTTGG
CTGGAAAGAGTCCGTAGCGGTTCTTGCACAATCCCCTCCACCACCCATCG
TCGATCTTCTCGATGTGGGTGATCACGTCATCTGGATCAAAGGATATCTC
GTCGTCATCCGCCGCCTGGTAGTCGTACAGGGCAATGGCGTGGATTCCGG
TGTCCTCCAGATAGTCGGCCAAATTGTCTGAGTTCGCGTAGATTGCCTCC
TCGGGAACGGTTGCGGTGCCACTCGGAGCAACAGCCTCTGAAACGGTTCC
ATTCGTTGGTGGCAAGGGCGAGGCAGCCTTAATCTCGGCCTGGTTCTGGT
ACAGTGGCTCTTCTTCAACTACTGGCTCAGGATCGGCTTGAGGTTGCGGC
TCAGGTTGGACTTGGACTTGGGCGTGGACTTCGGGTTGAGGCGTCGGCAC
ATACACTGGTGATTGCGGCTCACTTCTGGGAGGCGTGTCCACGGTCTCAA
CCTCAATTTGGGGCACCACATCTGGTGGTGGAGCTGCAGCCTTGGCCACT
GGAGCTGTTTCCGGCTCTCGAGCGGGGACCACTGTCGGAGTAGGAGCAAC
CGCAGCTGATGTTGTACTTGCCGTTGGCTCCTCCTTTGCTTCTAATTCTA
TTTTAACAGGCTGCGCCTTGGGAATGATAATGGGTTCCTTTCGTGCTGGA
GGGGTTTCAGAAACAGGCGACTGCATCTGGTTAAATGCACTGATAGCATT
GCCAATGCCACCGGTCCGACCTGTCTGGATGGCCGCCCTGCTGCCCTTTG
GAGGCGGTGCTTCCGTCGAGGTACGAGGAGTGTTCTCGGGCACAGTCTTC
TTGGCGGCTTCCTCCCGATCCCGCTTGTCTTGGGGCTCACGGAGACGTTT
CTGTTTCTCGGCCCGCTTACGTGACTCCTCCTCGGAGTTTTT

BO08583.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:27:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG3637-PA 1680 Cortactin-RA 754..1677 942..19 4495 99.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:50:15
Subject Length Description Subject Range Query Range Score Percent Strand
Cortactin-RD 2388 CG3637-RD 916..1839 942..19 4545 99.5 Minus
Cortactin-RC 2391 CG3637-RC 919..1842 942..19 4545 99.5 Minus
Cortactin-RB 2419 CG3637-RB 947..1870 942..19 4545 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:50:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21062229..21063152 19..942 4545 99.5 Plus
Blast to na_te.dros performed on 2015-02-10 18:50:14 has no hits.

BO08583.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:51:12 Download gff for BO08583.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3637-PA 754..1680 15..942 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:47:31 Download gff for BO08583.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3637-PA 754..1680 15..942 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:04:05 Download gff for BO08583.3prime
Subject Subject Range Query Range Percent Splice Strand
Cortactin-RB 947..1879 11..942 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:05:06 Download gff for BO08583.3prime
Subject Subject Range Query Range Percent Splice Strand
Cortactin-RB 947..1879 11..942 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:05:06 Download gff for BO08583.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 21062220..21063152 11..942 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:04:05 Download gff for BO08583.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16887942..16888874 11..942 99   Plus

BO08583.5prime Sequence

873 bp (734 high quality bases) assembled on 2006-01-06

> BO08583.5prime
GAAGTTATCAGTCGACATGTGGAAGGCAAGTGCCGGTCACCAGATTCAGG
CCACCAGTGCAGCCTCCGCGGAGGACGACGACTGGGAGACGGATCCGGAC
TTCGTGAACGATGTCAGTGAGCAGGAGCAGCGCTGGGGATCAAAGACGAT
CGACGGCAGCGGTCGCACAGCAGGCACCATCGACATGGACAAGCTGCGCG
AGGAGACGGAGCAGGCCGATCTGGACAAGAAGAAGCAGCTGCTGAAGGAT
CAGAACGCAGGATACGGATACGGGGGCAAGTTTGGCGTTGAGAAGGACCG
CATGGACAAGTCGGCTGTGGGTCATGACTACCAGGGCAAGGTGGGAAAGC
ACGCCTCGCAGAAGGACTACAGCGATGGTTTTGGGGGAAAGTTCGGAGTG
CAAGAGGATCGCAAGGACAAGTCTGCCGTGGGCTGGGACCACGTCGAAAA
GGTCGAGAAGCACGCCTCCCAGAAGGATTACGCCACCGGCTTCGGAGGCA
AATTTGGAGTGCAGTCCGATCGGGTGGATAAATCCGCCGTGGGCTGGGAT
CACATCGAGAAGGTGGAGAAGCACGAGTCTCAGAAGGATTACTCCAAGGG
CTTTGGCGGCAAGTTTGGCGTTCAGGAGGACCGAAAGGACAAGTCCGCGG
TGGGATGGGACCACAAAGAGGCTCCGCAGAAGCACGCCAGCCAGGTGGAC
CACAAGGTCAAGCCAGTCATCGAAGGTGCCAAGCCTTCTCATTTGCGTGC
CAAGTTCGAGAATCTGGCTAAAAACTCCGAGGAGGAGTCACGTAAGCGGG
CCGAGGAACAGAAACGTCTCCGTGAGGCCAAGGACAAGCGGGATCGGGAG
GAAGCCGCCAAGAGGACTGTGGC

BO08583.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:27:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG3637-PA 1680 Cortactin-RA 1..857 17..873 4210 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 01:33:31
Subject Length Description Subject Range Query Range Score Percent Strand
Cortactin-RD 2388 CG3637-RD 163..1019 17..873 4240 99.6 Plus
Cortactin-RC 2391 CG3637-RC 166..1022 17..873 4240 99.6 Plus
Cortactin-RB 2419 CG3637-RB 194..1050 17..873 4240 99.6 Plus
Cortactin-RD 2388 CG3637-RD 418..700 383..665 305 74.3 Plus
Cortactin-RD 2388 CG3637-RD 529..811 272..554 305 74.3 Plus
Cortactin-RC 2391 CG3637-RC 421..703 383..665 305 74.3 Plus
Cortactin-RC 2391 CG3637-RC 532..814 272..554 305 74.3 Plus
Cortactin-RD 2388 CG3637-RD 484..588 560..664 195 79 Plus
Cortactin-RD 2388 CG3637-RD 706..810 338..442 195 79 Plus
Cortactin-RC 2391 CG3637-RC 487..591 560..664 195 79 Plus
Cortactin-RC 2391 CG3637-RC 709..813 338..442 195 79 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 01:33:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21063426..21063829 587..184 2020 100 Minus
3R 32079331 3R 21063049..21063335 873..587 1390 99 Minus
3R 32079331 3R 21063898..21064064 183..17 835 100 Minus
3R 32079331 3R 21063459..21063741 665..383 305 73.9 Minus
3R 32079331 3R 21063426..21063630 476..272 215 73.7 Minus
3R 32079331 3R 21063571..21063675 664..560 195 79 Minus
Blast to na_te.dros performed 2015-02-04 01:33:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Ulysses 10653 Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). 5609..5663 70..124 122 69.1 Plus

BO08583.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:51:13 Download gff for BO08583.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3637-PA 1..857 17..873 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:47:32 Download gff for BO08583.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3637-PA 1..857 17..873 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:42:08 Download gff for BO08583.5prime
Subject Subject Range Query Range Percent Splice Strand
Cortactin-RB 192..1050 14..873 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:30:23 Download gff for BO08583.5prime
Subject Subject Range Query Range Percent Splice Strand
Cortactin-RB 192..1050 14..873 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:30:23 Download gff for BO08583.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 21063049..21063334 588..873 98 <- Minus
3R 21063426..21063829 184..587 100 <- Minus
3R 21063898..21064066 14..183 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:42:08 Download gff for BO08583.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16888771..16889056 588..873 98 <- Minus
arm_3R 16889148..16889551 184..587 100 <- Minus
arm_3R 16889620..16889788 14..183 99   Minus

BO08583.complete Sequence

1711 bp (1711 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631246

> BO08583.complete
GAAGTTATCAGTCGACATGTGGAAGGCAAGTGCCGGTCACCAGATTCAGG
CCACCAGTGCAGCCTCCGCGGAGGACGACGACTGGGAGACGGATCCGGAC
TTCGTGAACGATGTCAGTGAGCAGGAGCAGCGCTGGGGATCAAAGACGAT
CGACGGCAGCGGTCGCACAGCAGGCACCATCGACATGGACAAGCTGCGCG
AGGAGACGGAGCAGGCCGATCTGGACAAGAAGAAGCAGCTGCTGAAGGAT
CAGAACGCAGGATACGGATACGGGGGCAAGTTTGGCGTTGAGAAGGACCG
CATGGACAAGTCGGCTGTGGGTCATGACTACCAGGGCAAGGTGGGAAAGC
ACGCCTCGCAGAAGGACTACAGCGATGGTTTTGGGGGAAAGTTCGGAGTG
CAAGAGGATCGCAAGGACAAGTCTGCCGTGGGCTGGGACCACGTCGAAAA
GGTCGAGAAGCACGCCTCCCAGAAGGATTACGCCACCGGCTTCGGAGGCA
AATTTGGAGTGCAGTCCGATCGGGTGGATAAATCCGCCGTGGGCTGGGAT
CACATCGAGAAGGTGGAGAAGCACGAGTCTCAGAAGGATTACTCCAAGGG
CTTTGGCGGCAAGTTTGGCGTTCAGGAGGACCGAAAGGACAAGTCCGCGG
TGGGATGGGACCACAAAGAGGCTCCGCAGAAGCACGCCAGCCAGGTGGAC
CACAAGGTCAAGCCAGTCATCGAAGGTGCCAAGCCTTCCAATTTGCGTGC
CAAGTTCGAGAATCTGGCTAAAAACTCCGAGGAGGAGTCACGTAAGCGGG
CCGAGGAACAGAAACGTCTCCGTGAGGCCAAGGACAAGCGGGATCGGGAG
GAAGCCGCCAAGAAGACTGTGGCCGAGAACACTCCTCGTACCTCGACGGA
AGCACCGCCTCCAAAGGGCAGCAGGGCGGCCATCCAGACAGGTCGGACCG
GTGGCATTGGCAATGCTATCAGTGCATTTAACCAGATGCAGTCGCCTGTT
TCTGAAACCCCTCCAGCACGAAAGGAACCCATTATCATTCCCAAGGCGCA
GCCTGTTAAAATAGAATTAGAAGCAAAGGAGGAGCCAACGGCAAGTACAA
CATCAGCTGCGGTTGCTCCTACTCCGACAGTGGTCCCCGCTCGAGAGCCG
GAAACAGCTCCAGTGGCCAAGGCTGCAGCTCCACCACCAGATGTGGTGCC
CCAAATTGAGGTTGAGACCGTGGACACGCCTCCCAGAAGTGAGCCGCAAT
CACCAGTGTATGTGCCGACGCCTCAACCCGAAGTCCACGCCCAAGTCCAA
GTCCAACCTGAGCCGCAACCTCAAGCCGATCCTGAGCCAGTAGTTGAAGA
AGAGCCACTGTACCAGAACCAGGCCGAGATTAAGGCTGCCTCGCCCTTGC
CACCAACGAATGGAACCGTTTCAGAGGCTGTTGCTCCGAGTGGCACCGCA
ACCGTTCCCGAGGAGGCAATCTACGCGAACTCAGACAATTTGGCCGACTA
TCTGGAGGACACCGGAATCCACGCCATTGCCCTGTACGACTACCAGGCGG
CGGATGACGACGAGATATCCTTTGATCCAGATGACGTGATCACCCACATC
GAGAAGATCGACGATGGGTGGTGGAGGGGATTGTGCAAGAACCGCTACGG
ACTCTTTCCAGCCAACTACGTGCAGGTGGTGGGACAGAACTCAGCAAGCT
TTCTAGACCAT

BO08583.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:40:58
Subject Length Description Subject Range Query Range Score Percent Strand
Cortactin-RD 1680 CG3637-PD 1..1677 17..1693 8385 100 Plus
Cortactin-RC 1680 CG3637-PC 1..1677 17..1693 8385 100 Plus
Cortactin-RB 1680 CG3637-PB 1..1677 17..1693 8385 100 Plus
Cortactin-RD 1680 CG3637-PD 256..538 383..665 305 73.9 Plus
Cortactin-RD 1680 CG3637-PD 367..649 272..554 305 73.9 Plus
Cortactin-RC 1680 CG3637-PC 256..538 383..665 305 73.9 Plus
Cortactin-RC 1680 CG3637-PC 367..649 272..554 305 73.9 Plus
Cortactin-RD 1680 CG3637-PD 322..426 560..664 195 79 Plus
Cortactin-RD 1680 CG3637-PD 544..648 338..442 195 79 Plus
Cortactin-RC 1680 CG3637-PC 322..426 560..664 195 79 Plus
Cortactin-RC 1680 CG3637-PC 544..648 338..442 195 79 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:41:00
Subject Length Description Subject Range Query Range Score Percent Strand
Cortactin-RD 2388 CG3637-RD 163..1839 17..1693 8385 100 Plus
Cortactin-RC 2391 CG3637-RC 166..1842 17..1693 8385 100 Plus
Cortactin-RB 2419 CG3637-RB 194..1870 17..1693 8385 100 Plus
Cortactin-RD 2388 CG3637-RD 418..700 383..665 305 73.9 Plus
Cortactin-RD 2388 CG3637-RD 529..811 272..554 305 73.9 Plus
Cortactin-RC 2391 CG3637-RC 421..703 383..665 305 73.9 Plus
Cortactin-RC 2391 CG3637-RC 532..814 272..554 305 73.9 Plus
Cortactin-RD 2388 CG3637-RD 484..588 560..664 195 79 Plus
Cortactin-RD 2388 CG3637-RD 706..810 338..442 195 79 Plus
Cortactin-RC 2391 CG3637-RC 487..591 560..664 195 79 Plus
Cortactin-RC 2391 CG3637-RC 709..813 338..442 195 79 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:40:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21062229..21063335 1693..587 5535 100 Minus
3R 32079331 3R 21063426..21063829 587..184 2020 100 Minus
3R 32079331 3R 21063898..21064064 183..17 835 100 Minus
3R 32079331 3R 21063459..21063741 665..383 305 73.9 Minus
3R 32079331 3R 21063426..21063630 476..272 215 73.7 Minus
3R 32079331 3R 21063571..21063675 664..560 195 79 Minus
Blast to na_te.dros performed 2014-11-28 00:40:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Ulysses 10653 Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). 5609..5663 70..124 122 69.1 Plus

BO08583.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:00:14 Download gff for BO08583.complete
Subject Subject Range Query Range Percent Splice Strand
Cortactin-RA 1..1680 17..1697 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:18:29 Download gff for BO08583.complete
Subject Subject Range Query Range Percent Splice Strand
Cortactin-RA 212..1899 14..1701 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:57:22 Download gff for BO08583.complete
Subject Subject Range Query Range Percent Splice Strand
Cortactin-RB 194..1870 17..1695 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:00:14 Download gff for BO08583.complete
Subject Subject Range Query Range Percent Splice Strand
Cortactin-RA 212..1899 14..1701 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:24:40 Download gff for BO08583.complete
Subject Subject Range Query Range Percent Splice Strand
Cortactin-RB 194..1870 17..1695 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:24:40 Download gff for BO08583.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21063898..21064064 17..183 100   Minus
3R 21063426..21063829 184..587 100 <- Minus
3R 21062227..21063334 588..1695 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:57:22 Download gff for BO08583.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16887949..16889056 588..1695 99 <- Minus
arm_3R 16889148..16889551 184..587 100 <- Minus
arm_3R 16889620..16889786 17..183 100   Minus

BO08583.pep Sequence

Translation from 16 to 1711

> BO08583.pep
MWKASAGHQIQATSAASAEDDDWETDPDFVNDVSEQEQRWGSKTIDGSGR
TAGTIDMDKLREETEQADLDKKKQLLKDQNAGYGYGGKFGVEKDRMDKSA
VGHDYQGKVGKHASQKDYSDGFGGKFGVQEDRKDKSAVGWDHVEKVEKHA
SQKDYATGFGGKFGVQSDRVDKSAVGWDHIEKVEKHESQKDYSKGFGGKF
GVQEDRKDKSAVGWDHKEAPQKHASQVDHKVKPVIEGAKPSNLRAKFENL
AKNSEEESRKRAEEQKRLREAKDKRDREEAAKKTVAENTPRTSTEAPPPK
GSRAAIQTGRTGGIGNAISAFNQMQSPVSETPPARKEPIIIPKAQPVKIE
LEAKEEPTASTTSAAVAPTPTVVPAREPETAPVAKAAAPPPDVVPQIEVE
TVDTPPRSEPQSPVYVPTPQPEVHAQVQVQPEPQPQADPEPVVEEEPLYQ
NQAEIKAASPLPPTNGTVSEAVAPSGTATVPEEAIYANSDNLADYLEDTG
IHAIALYDYQAADDDEISFDPDDVITHIEKIDDGWWRGLCKNRYGLFPAN
YVQVVGQNSASFLDH

BO08583.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:58:46
Subject Length Description Subject Range Query Range Score Percent Strand
Cortactin-PD 559 CG3637-PD 1..559 1..559 2942 100 Plus
Cortactin-PC 559 CG3637-PC 1..559 1..559 2942 100 Plus
Cortactin-PB 559 CG3637-PB 1..559 1..559 2942 100 Plus
Cortactin-PA 559 CG3637-PA 1..559 1..559 2942 100 Plus
Abp1-PA 531 CG10083-PA 184..530 248..555 293 29.1 Plus