Clone Sequence Records
BO08585.3prime Sequence
839 bp (838 high quality bases) assembled on 2006-01-06
> BO08585.3prime
ATGGTCTAGAAAGCTTGCGAGAAAGAATTTGCCCAGCAGGAGGCTAACGA
TGGCCGCAGCAATGGCAACTGCAATGTAAAAGACCGGAATCTGCTTCTCA
GCCAGGACTGGGGCATAGGGCTCATTCACCTGTTTGACGGCCGGCGAGCT
CCGGAAACGTGTGATTTGATCCTTCAAGTGAAGATTCTCTCTTCGCAATT
CAATGTTGCATTCACGCAGCGCTTTGATCTCTCCGGACAGCAAGTCCAGA
CTCTCAGACGTTTCGAGCAAATTGGATGGCTTAAACTTATCCTCGCTGGA
GAGCTTCGGCTTGCTCTCGAGCGCCTCAGCGCTGGCTGAGCTAGTATTGG
CACCCGCGCTTCCGCCTCCGGCAGCTCCGGTTCCGCCGCCAACGGCACCA
CCACCGCTGGTGTTCTCAGCATTTGCCTCAGCGGTGGGCATCTCGAAAAC
GCACTTCAGTTTGGCGTCCATCAGCTGCTCGGGCTCCAGATCCTTCCACA
ATTTATTTAAATCGCTTAGATCAGCATCCATGGGTGCCAGGACGCTCTGC
ACCATGAACTTGTGCTTGTTCTTCTCCTGCTGATCGTAGACGAATGGCTG
AAGGCAGATCTCCACCTGGGTTGATCGAAAGGGAATTATCTTGCCGATGT
TTGGACGTACGCAGTAGCGTTTCGGGGCGGTTGTCTTGATCTTGAAGACC
AGAGGCAGAGCCGAGTTGTTGCGCAGAGTCATGATTGTGACAACGGGTCG
GGTGAAGGGACCCACAAAACGCAACTCATGTTCTGGTTCAATGGTCAACG
GAAGATCAAAGAGTGATTTGCTCATGTCGACTGATAACT
BO08585.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:27:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5014-PB | 810 | Vap-33-1-RB | 1..807 | 825..19 | 4035 | 100 | Minus |
CG5014-PC | 810 | Vap-33-1-RC | 1..807 | 825..19 | 4035 | 100 | Minus |
CG5014-PD | 717 | Vap-33-1-RD | 1..714 | 732..19 | 3570 | 100 | Minus |
CG5014-PA | 708 | Vap-33-1-RA | 1..401 | 825..425 | 2005 | 100 | Minus |
CG5014-PA | 708 | Vap-33-1-RA | 393..705 | 331..19 | 1565 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 14:46:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vap-33A-RE | 3897 | CG5014-RE | 568..1374 | 825..19 | 4035 | 100 | Minus |
Vap-33A-RC | 3607 | CG5014-RC | 278..1084 | 825..19 | 4035 | 100 | Minus |
Vap-33A-RB | 2541 | CG5014-RB | 568..1374 | 825..19 | 4035 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 14:46:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 3951828..3952041 | 499..286 | 1070 | 100 | Minus |
X | 23542271 | X | 3952761..3952919 | 177..19 | 780 | 99.4 | Minus |
X | 23542271 | X | 3951414..3951567 | 762..609 | 770 | 100 | Minus |
X | 23542271 | X | 3952106..3952222 | 287..171 | 585 | 100 | Minus |
X | 23542271 | X | 3951636..3951745 | 608..499 | 550 | 100 | Minus |
X | 23542271 | X | 3949650..3949715 | 825..760 | 330 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 14:46:50 has no hits.
BO08585.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:51:16 Download gff for
BO08585.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5014-PC | 1..810 | 16..825 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:47:37 Download gff for
BO08585.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5014-PC | 1..810 | 16..825 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:59:25 Download gff for
BO08585.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vap-33-1-RB | 568..1378 | 15..825 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:39:18 Download gff for
BO08585.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vap-33A-RB | 568..1378 | 15..825 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:39:18 Download gff for
BO08585.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 3949650..3949713 | 762..825 | 100 | -> | Minus |
X | 3951415..3951567 | 609..761 | 100 | -> | Minus |
X | 3951636..3951745 | 499..608 | 100 | -> | Minus |
X | 3951829..3952041 | 286..498 | 100 | -> | Minus |
X | 3952108..3952221 | 172..285 | 100 | -> | Minus |
X | 3952767..3952924 | 14..171 | 98 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:59:25 Download gff for
BO08585.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 3843683..3843746 | 762..825 | 100 | -> | Minus |
arm_X | 3845448..3845600 | 609..761 | 100 | -> | Minus |
arm_X | 3845669..3845778 | 499..608 | 100 | -> | Minus |
arm_X | 3845862..3846074 | 286..498 | 100 | -> | Minus |
arm_X | 3846141..3846254 | 172..285 | 100 | -> | Minus |
arm_X | 3846800..3846957 | 14..171 | 98 | -> | Minus |
BO08585.5prime Sequence
839 bp (806 high quality bases) assembled on 2006-01-06
> BO08585.5prime
GAAGTTATCAGTCGACATGAGCAAATCACTCTTTGATCTTCCGTTGACCA
TTGAACCAGAACATGAGTTGCGTTTTGTGGGTCCCTTCACCCGACCCGTT
GTCACAATCATGACTCTGCGCAACAACTCGGCTCTGCCTCTGGTCTTCAA
GATCAAGACAACCGCCCCGAAACGCTACTGCGTACGTCCAAACATCGGCA
AGATAATTCCCTTTCGATCAACCCAGGTGGAGATCTGCCTTCAGCCATTC
GTCTACGATCAGCAGGAGAAGAACAAGCACAAGTTCATGGTGCAGAGCGT
CCTGGCACCCATGGATGCTGATCTAAGCGATTTAAATAAATTGTGGAAGG
ATCTGGAGCCCGAGCAGCTGATGGACGCCAAACTGAAGTGCGTTTTCGAG
ATGCCCACCGCTGAGGCAAATGCTGAGAACACCAGCGGTGGTGGTGCCGT
TGGCGGCGGAACCGGAGCTGCCGGAGGCGGAAGCGCGGGTGCCAATACTA
GCTCAGCCAGCGCTGAGGCGCTCGAGAGCAAGCCGAAGCTCTCCAGCGAG
GATAAGTTTAAGCCATCCAATTTGCTCGAAACGTCTGAGAGTCTGGACTT
GCTGTCCGGAGAGATCAAAGCGCTGCGTGAATGCAACATTGAATTGCGAA
GAGAGAATCTTCACTTGAAGGATCAAATCACACGTTTCCGGAGCTCGCCG
GCCGTCAAACAGGTGAATGAGCCCTATGCCCCAGTCCTGGCTGAGAAGCA
GATTCCGGTCTTTTACATTGCAGTTGCCATTGCTGCGGCCATCGTTAGCC
TCCTGCTGGGCAAATTCTTTCTCGCAAGCTTTCTAGACC
BO08585.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:27:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5014-PB | 810 | Vap-33-1-RB | 1..807 | 17..823 | 4035 | 100 | Plus |
CG5014-PC | 810 | Vap-33-1-RC | 1..807 | 17..823 | 4035 | 100 | Plus |
CG5014-PD | 717 | Vap-33-1-RD | 1..714 | 110..823 | 3570 | 100 | Plus |
CG5014-PA | 708 | Vap-33-1-RA | 1..401 | 17..417 | 2005 | 100 | Plus |
CG5014-PA | 708 | Vap-33-1-RA | 393..705 | 511..823 | 1565 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:10:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vap-33A-RE | 3897 | CG5014-RE | 568..1374 | 17..823 | 4035 | 100 | Plus |
Vap-33A-RC | 3607 | CG5014-RC | 278..1084 | 17..823 | 4035 | 100 | Plus |
Vap-33A-RB | 2541 | CG5014-RB | 568..1374 | 17..823 | 4035 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:10:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 3951828..3952041 | 343..556 | 1070 | 100 | Plus |
X | 23542271 | X | 3952761..3952919 | 665..823 | 780 | 99.4 | Plus |
X | 23542271 | X | 3951414..3951567 | 80..233 | 770 | 100 | Plus |
X | 23542271 | X | 3952106..3952222 | 555..671 | 585 | 100 | Plus |
X | 23542271 | X | 3951636..3951745 | 234..343 | 550 | 100 | Plus |
X | 23542271 | X | 3949650..3949715 | 17..82 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 12:10:42 has no hits.
BO08585.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:51:17 Download gff for
BO08585.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5014-PC | 1..810 | 17..826 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:47:38 Download gff for
BO08585.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5014-PC | 1..810 | 17..826 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:57:34 Download gff for
BO08585.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vap-33-1-RB | 568..1378 | 17..827 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:58:46 Download gff for
BO08585.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vap-33A-RB | 568..1378 | 17..827 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:58:46 Download gff for
BO08585.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 3951636..3951745 | 234..343 | 100 | -> | Plus |
X | 3951415..3951567 | 81..233 | 100 | -> | Plus |
X | 3949650..3949713 | 17..80 | 100 | -> | Plus |
X | 3951829..3952041 | 344..556 | 100 | -> | Plus |
X | 3952108..3952221 | 557..670 | 100 | -> | Plus |
X | 3952767..3952924 | 671..828 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:57:34 Download gff for
BO08585.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 3843683..3843746 | 17..80 | 100 | -> | Plus |
arm_X | 3845448..3845600 | 81..233 | 100 | -> | Plus |
arm_X | 3845669..3845778 | 234..343 | 100 | -> | Plus |
arm_X | 3845862..3846074 | 344..556 | 100 | -> | Plus |
arm_X | 3846141..3846254 | 557..670 | 100 | -> | Plus |
arm_X | 3846800..3846957 | 671..828 | 98 | -> | Plus |
BO08585.complete Sequence
841 bp (841 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631247
> BO08585.complete
GAAGTTATCAGTCGACATGAGCAAATCACTCTTTGATCTTCCGTTGACCA
TTGAACCAGAACATGAGTTGCGTTTTGTGGGTCCCTTCACCCGACCCGTT
GTCACAATCATGACTCTGCGCAACAACTCGGCTCTGCCTCTGGTCTTCAA
GATCAAGACAACCGCCCCGAAACGCTACTGCGTACGTCCAAACATCGGCA
AGATAATTCCCTTTCGATCAACCCAGGTGGAGATCTGCCTTCAGCCATTC
GTCTACGATCAGCAGGAGAAGAACAAGCACAAGTTCATGGTGCAGAGCGT
CCTGGCACCCATGGATGCTGATCTAAGCGATTTAAATAAATTGTGGAAGG
ATCTGGAGCCCGAGCAGCTGATGGACGCCAAACTGAAGTGCGTTTTCGAG
ATGCCCACCGCTGAGGCAAATGCTGAGAACACCAGCGGTGGTGGTGCCGT
TGGCGGCGGAACCGGAGCTGCCGGAGGCGGAAGCGCGGGTGCCAATACTA
GCTCAGCCAGCGCTGAGGCGCTCGAGAGCAAGCCGAAGCTCTCCAGCGAG
GATAAGTTTAAGCCATCCAATTTGCTCGAAACGTCTGAGAGTCTGGACTT
GCTGTCCGGAGAGATCAAAGCGCTGCGTGAATGCAACATTGAATTGCGAA
GAGAGAATCTTCACTTGAAGGATCAAATCACACGTTTCCGGAGCTCGCCG
GCCGTCAAACAGGTGAATGAGCCCTATGCCCCAGTCCTGGCTGAGAAGCA
GATTCCGGTCTTTTACATTGCAGTTGCCATTGCTGCGGCCATCGTTAGCC
TCCTGCTGGGCAAATTCTTTCTCGCAAGCTTTCTAGACCAT
BO08585.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:44:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vap-33A-RE | 810 | CG5014-PE | 1..807 | 17..823 | 4035 | 100 | Plus |
Vap-33A-RC | 810 | CG5014-PC | 1..807 | 17..823 | 4035 | 100 | Plus |
Vap-33A-RB | 810 | CG5014-PB | 1..807 | 17..823 | 4035 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:44:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vap-33A-RE | 3897 | CG5014-RE | 568..1374 | 17..823 | 4035 | 100 | Plus |
Vap-33A-RC | 3607 | CG5014-RC | 278..1084 | 17..823 | 4035 | 100 | Plus |
Vap-33A-RB | 2541 | CG5014-RB | 568..1374 | 17..823 | 4035 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:44:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 3951828..3952041 | 343..556 | 1070 | 100 | Plus |
X | 23542271 | X | 3952761..3952919 | 665..823 | 780 | 99.4 | Plus |
X | 23542271 | X | 3951414..3951567 | 80..233 | 770 | 100 | Plus |
X | 23542271 | X | 3952106..3952222 | 555..671 | 585 | 100 | Plus |
X | 23542271 | X | 3951636..3951745 | 234..343 | 550 | 100 | Plus |
X | 23542271 | X | 3949650..3949715 | 17..82 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:44:55 has no hits.
BO08585.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:00:34 Download gff for
BO08585.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vap-33-1-RC | 1..810 | 17..826 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:32:40 Download gff for
BO08585.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vap-33-1-RC | 223..1033 | 17..827 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:32:35 Download gff for
BO08585.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vap-33-1-RB | 568..1374 | 17..825 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:00:35 Download gff for
BO08585.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vap-33-1-RC | 223..1033 | 17..827 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:25:38 Download gff for
BO08585.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vap-33A-RB | 568..1374 | 17..825 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:25:38 Download gff for
BO08585.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 3951636..3951745 | 234..343 | 100 | -> | Plus |
X | 3951829..3952041 | 344..556 | 100 | -> | Plus |
X | 3952108..3952221 | 557..670 | 100 | -> | Plus |
X | 3952767..3952919 | 671..825 | 98 | | Plus |
X | 3949650..3949713 | 17..80 | 100 | -> | Plus |
X | 3951415..3951567 | 81..233 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:32:35 Download gff for
BO08585.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 3845448..3845600 | 81..233 | 100 | -> | Plus |
arm_X | 3845669..3845778 | 234..343 | 100 | -> | Plus |
arm_X | 3843683..3843746 | 17..80 | 100 | -> | Plus |
arm_X | 3845862..3846074 | 344..556 | 100 | -> | Plus |
arm_X | 3846141..3846254 | 557..670 | 100 | -> | Plus |
arm_X | 3846800..3846952 | 671..825 | 98 | | Plus |
BO08585.pep Sequence
Translation from 16 to 841
> BO08585.pep
MSKSLFDLPLTIEPEHELRFVGPFTRPVVTIMTLRNNSALPLVFKIKTTA
PKRYCVRPNIGKIIPFRSTQVEICLQPFVYDQQEKNKHKFMVQSVLAPMD
ADLSDLNKLWKDLEPEQLMDAKLKCVFEMPTAEANAENTSGGGAVGGGTG
AAGGGSAGANTSSASAEALESKPKLSSEDKFKPSNLLETSESLDLLSGEI
KALRECNIELRRENLHLKDQITRFRSSPAVKQVNEPYAPVLAEKQIPVFY
IAVAIAAAIVSLLLGKFFLASFLDH
BO08585.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:46:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vap-33A-PE | 269 | CG5014-PE | 1..269 | 1..269 | 1362 | 100 | Plus |
Vap-33A-PC | 269 | CG5014-PC | 1..269 | 1..269 | 1362 | 100 | Plus |
Vap-33A-PB | 269 | CG5014-PB | 1..269 | 1..269 | 1362 | 100 | Plus |
Vap-33A-PA | 235 | CG5014-PA | 1..235 | 1..269 | 1148 | 87.4 | Plus |
fan-PA | 218 | CG7919-PA | 9..140 | 10..145 | 210 | 35 | Plus |