Clone BO08586 Report

Search the DGRC for BO08586

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:85
Well:86
Vector:pDNR-Dual
Associated Gene/Transcriptgrowl-RA
Protein status:BO08586.pep: validated full length
Sequenced Size:1669

Clone Sequence Records

BO08586.3prime Sequence

959 bp (879 high quality bases) assembled on 2006-01-06

> BO08586.3prime
ATGGTCTAGAAAGCTTGCTACTGTGGTGGTGTCGACAGCTTCGATGCGTG
CACCACCCACGTCGCCTCCTGCCACAGTTACGGCCTCCCCTCCGTTTTGC
GCGTCTGCTTTTCCATCCTCGCCTGCACCGGCATTGGCACCAGTGGAGCT
AGCACTTTTCTTCTCGCCAAATTGGATCAGTTCTACGTTGACGAGAATAG
TCTTGGTCTGCACAGGCGTTGCAGTCTCAGCTGACTCTGCTTTCTCACCG
CCCTCCCCTGCGGCGGCAGCTGGGGCTGTCTCGCCACCAGTGGTAATGGT
GAGCGAGAGATCGTTGAGAGACTTCAACACCTTGTCCATGTCGTCCTGGG
TACTGGGAACCCCCTTGCGGTTTCCAAAGTGCAGGAAACACTTTCCGAAG
TGTCCCTTCCAAGAAATTGACATCGGAGTGCATTCGCGTTTGCGGAGCTC
CGACTTTAAGTCCTTGACGCGAATATCACGAGACAGATTTGTCAACTTAA
TGCAAAAATCACTGTTCTTGTTCTTCTTTGAACGACGCTCATCAGTGCCA
GCCTCTGGTAACTTACGATCATCAGTTTTAGCACCTGCTTCCACACCAGA
CTGATCGCCCTCAGACTTAGTTGTACGTCTGCGGCGATTGACGAAACGAC
CTTTGCGCCGCGGAGTGCGTTTCTGAGCAGTCTCGCCCTGCGGCTGTTCG
TTGTCAGTCTGCGAAGTGGTGCGACCTGNGTTTCCTCGTTGGATGCGCCG
GCGCACAGGCCCACGGCGGCGTCTGTTGTTTTGATGTTGCTCCACATCGG
TGTCTTCCTCCTTGAGGGATATGGATTTTCCCGCCTTCTCCTCCCTTTCC
TTAAGCTGCTGCAGCACGGGCAATATTTTTAGACGGCGCTCGGACAGCAG
CTCCCAGTAAAACGCATTGGGGAAAGACAAGCGCTTTGGCACCTTGATTA
TTTCTGTGG

BO08586.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:27:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG14648-PA 1638 CG14648-RA 743..1635 911..19 4446 99.8 Minus
CG14648-PB 1017 CG14648-RB 122..1014 911..19 4446 99.8 Minus
CG14648-PA 1638 CG14648-RA 695..739 959..915 200 97.7 Minus
CG14648-PB 1017 CG14648-RB 74..118 959..915 200 97.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:46:26
Subject Length Description Subject Range Query Range Score Percent Strand
lost-RA 2691 CG14648-RA 821..1761 959..19 4634 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:46:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4405866..4406252 405..19 1935 100 Minus
3R 32079331 3R 4405145..4405420 959..684 1309 98.2 Minus
3R 32079331 3R 4405599..4405812 617..404 1070 100 Minus
3R 32079331 3R 4405480..4405548 684..616 345 100 Minus
Blast to na_te.dros performed on 2015-02-11 11:46:23 has no hits.

BO08586.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:51:18 Download gff for BO08586.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14648-PA 695..1638 18..959 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:47:39 Download gff for BO08586.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14648-PB 74..1017 18..959 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:56:22 Download gff for BO08586.3prime
Subject Subject Range Query Range Percent Splice Strand
lost-RB 666..1606 19..959 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:01:55 Download gff for BO08586.3prime
Subject Subject Range Query Range Percent Splice Strand
lost-RA 821..1761 19..959 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:01:55 Download gff for BO08586.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 4405145..4405419 685..959 98 -> Minus
3R 4405480..4405548 616..684 100 -> Minus
3R 4405601..4405811 405..615 100 -> Minus
3R 4405867..4406254 13..404 98 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:56:22 Download gff for BO08586.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 230867..231141 685..959 98 -> Minus
arm_3R 231202..231270 616..684 100 -> Minus
arm_3R 231323..231533 405..615 100 -> Minus
arm_3R 231589..231976 13..404 98 -> Minus

BO08586.5prime Sequence

852 bp (762 high quality bases) assembled on 2006-01-06

> BO08586.5prime
GAAGTTATCAGTCGACATGGAGGACCAAAGCAACGCAGCCCCCGCTGTCG
CCGCGGAGAACGGCGGAAACACCGCGCAGGAGGTGTCTTCGACAACTCAG
CCCATAGAGCCCACAAAGCGCTCGCTGCGCGTGCAGACCTGGAAAAAGAT
CCAAGAGGGCAAGGTTGGCATTGGATTCAACAACATATTTAACCGAATTC
CTTCGTTCGTGGGTGCCGATAAGGCTGCTGCCTTGTTTGCCAATGAAGAG
GAGTTCAAGAAAGCACAGCACATCAAGGTGAACATCGATCGCGTCTTGCA
TGAGTTTAAGGAACTGGCATTGCTGGCCGACAAGTCCGTATACTTGCCCA
GCACCCGCGAATCTTCTGCACTGTGCCTAAAGGTAGATGTGCTGGCCGAT
GCCACCGAGGAGCAGAAAAAGGAGGCTCTGCGCGTTCAAGATATTCAAAA
GTTTCGCTCGGAAATTGGATTGGACAGCGGTCTGAAGCTGGACATCGTGG
TTATTGGCTCTGTTGTAGTGTCACGCGAGGGTTACCGCATTGGACGCGGA
AATGGTTTCGCTGATCTGGACATCGGCCTCCTTATTGAACTGGGAGCCAT
TACACCGAAGACAATTATTGTCACAATCGTGCACGACATGCAGGTGGTGG
ACTCACTGCCCCCGAATCTATTCCAGAAGTACGATACGCCAGTTGATATC
ATTGCAACACCCACAGAAATAATCAGGGTGCCAAAGCGCTTGTCTTTCCC
CAATGGCGTTTACTGGGAGCTGCTGTCCGAGCGCCGTCTAAAAATATTGC
CCGTGCTGCAGCAGCTTAAGGAAAGGGAGGAGAAGGCGGGAAATCCATAT
CC

BO08586.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:27:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG14648-PA 1638 CG14648-RA 1..827 17..843 4135 100 Plus
CG14648-PB 1017 CG14648-RB 1..206 638..843 1030 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:16:57
Subject Length Description Subject Range Query Range Score Percent Strand
lost-RA 2691 CG14648-RA 127..963 17..852 4160 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:16:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4404697..4405277 263..843 2890 99.8 Plus
3R 32079331 3R 4404465..4404639 92..266 860 99.4 Plus
3R 32079331 3R 4403202..4403280 17..95 395 100 Plus
Blast to na_te.dros performed on 2015-02-10 23:16:55 has no hits.

BO08586.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:51:19 Download gff for BO08586.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14648-PA 1..837 17..852 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:47:40 Download gff for BO08586.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14648-PA 1..837 17..852 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:30:22 Download gff for BO08586.5prime
Subject Subject Range Query Range Percent Splice Strand
lost-RA 151..990 12..852 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:29:39 Download gff for BO08586.5prime
Subject Subject Range Query Range Percent Splice Strand
lost-RA 124..963 12..852 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:29:39 Download gff for BO08586.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 4403199..4403280 12..95 97 -> Plus
3R 4404469..4404639 96..266 100 -> Plus
3R 4404701..4405287 267..852 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:30:22 Download gff for BO08586.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 228921..229002 12..95 97 -> Plus
arm_3R 230191..230361 96..266 100 -> Plus
arm_3R 230423..231009 267..852 99   Plus

BO08586.complete Sequence

1669 bp (1669 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631248

> BO08586.complete
GAAGTTATCAGTCGACATGGAGGACCAAAGCAACGCAGCCCCCGCTGTCG
CCGCGGAGAACGGCGGAAACACCGCGCAGGAGGTGTCTTCGACAACTCAG
CCCATAGAGCCCACAAAGCGCTCGCTGCGCGTGCAGACCTGGAAAAAGAT
CCAAGAGGGCAAGGTTGGCATTGGATTCAACAACATATTTAACCGAATTC
CTTCGTTCGTGGGTGCCGATAAGGCTGCTGCCTTGTTTGCCAATGAAGAG
GAGTTCAAGAAAGCACAGCACATCAAGGTGAACATCGATCGCGTCTTGCA
TGAGTTTAAGGAACTGGCATTGCTGGCCGACAAGTCCGTATACTTGCCCA
GCACCCGCGAATCTTCTGCACTGTGCCTAAAGGTAGATGTGCTGGCCGAT
GCCACCGAGGAGCAGAAAAAGGAGGCTCTGCGCGTTCAAGATATTCAAAA
GTTTCGCTCGGAAATTGGATTGGACAGCGGTCTGAAGCTGGACATCGTGG
TTATTGGCTCTGTTGTAGTGTCACGCGAGGGTTACCGCATTGGACGCGGA
AATGGTTTCGCTGATCTGGACATCGGCCTCCTTATTGAACTGGGAGCCAT
TACACCGAAGACAATTATTGTCACAATCGTGCACGACATGCAGGTGGTGG
ACTCACTGCCCCCGAATCTATTCCAGAAGTACGATACGCCAGTTGATATC
ATTGCAACACCCACAGAAATAATCAGGGTGCCAAAGCGCTTGTCTTTCCC
CAATGGCGTTTACTGGGAGCTGCTGTCCGAGCGCCGTCTAAAAATATTGC
CCGTGCTGCAGCAGCTTAAGGAAAGGGAGGAGAAGGCGGGAAAATCCATA
TCCCTCAAGGAGGAAGACACCGATGTGGAGCAACATCAAAACAACAGACG
CCGCCGTGGGCCTGTGCGCCGGCGCATCCAACGAGGAAACCCAGGTCGCA
CCACTTCGCAGACTGACAACGAACAGCCGCAGGGCGAGACTGCTCAGAAA
CGCACTCCGCGGCGCAAAGGTCGTTTCGTCAATCGCCGCAGACGTACAAC
TAAGTCTGAGGGCGATCAGTCTGGTGTGGAAGCAGGTGCTAAAACTGATG
ATCGTAAGTTACCAGAGGCTGGCACTGATGAGCGTCGTTCAAAGAAGAAC
AAGAACAGTGATTTTTGCATTAAGTTGACAAATCTGTCTCGTGATATTCG
CGTCAAGGACTTAAAGTCGGAGCTCCGCAAACGCGAATGCACTCCGATGT
CAATTTCTTGGAAGGGACACTTCGGAAAGTGTTTCCTGCACTTTGGAAAC
CGCAAGGGGGTTCCCAGTACCCAGGACGACATGGACAAGGTGTTGAAGTC
TCTCAACGATCTCTCGCTCACCATTACCACTGGTGGCGAGACAGCCCCAG
CTGCCGCCGCAGGGGAGGGCGGTGAGAAAGCAGAGTCAGCTGAGACTGCA
ACGCCTGTGCAGACCAAGACTATTCTCGTCAACGTAGAACTGATCCAATT
TGGCGAGAAGAAAAGTGCTAGCTCCACTGGTGCCAATGCCGGTGCAGGCG
AGGATGGAAAAGCAGACGCGCAAAACGGAGGGGAGGCCGTAACTGTGGCA
GGAGGCGACGTGGGTGGTGCACGCATCGAAGCTGTCGACACCACCACAGT
AGCAAGCTTTCTAGACCAT

BO08586.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:31:29
Subject Length Description Subject Range Query Range Score Percent Strand
lost-RA 1638 CG14648-PA 1..1635 17..1651 8175 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:31:30
Subject Length Description Subject Range Query Range Score Percent Strand
lost-RA 2691 CG14648-RA 127..1761 17..1651 8175 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:31:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4404697..4405420 263..986 3605 99.9 Plus
3R 32079331 3R 4405866..4406252 1265..1651 1935 100 Plus
3R 32079331 3R 4405599..4405812 1053..1266 1070 100 Plus
3R 32079331 3R 4404465..4404639 92..266 860 99.4 Plus
3R 32079331 3R 4403202..4403280 17..95 395 100 Plus
3R 32079331 3R 4405480..4405548 986..1054 345 100 Plus
Blast to na_te.dros performed on 2014-11-28 08:31:28 has no hits.

BO08586.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:00:15 Download gff for BO08586.complete
Subject Subject Range Query Range Percent Splice Strand
growl-RA 1..1638 17..1652 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:54:40 Download gff for BO08586.complete
Subject Subject Range Query Range Percent Splice Strand
growl-RA 154..1788 17..1653 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:42 Download gff for BO08586.complete
Subject Subject Range Query Range Percent Splice Strand
lost-RA 154..1788 17..1653 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:00:16 Download gff for BO08586.complete
Subject Subject Range Query Range Percent Splice Strand
growl-RA 151..1788 12..1651 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:19:50 Download gff for BO08586.complete
Subject Subject Range Query Range Percent Splice Strand
lost-RA 127..1761 17..1653 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:19:50 Download gff for BO08586.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4403202..4403280 17..95 100 -> Plus
3R 4404469..4404639 96..266 100 -> Plus
3R 4404701..4405419 267..985 100 -> Plus
3R 4405480..4405548 986..1054 100 -> Plus
3R 4405601..4405811 1055..1265 100 -> Plus
3R 4405867..4406252 1266..1653 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:42 Download gff for BO08586.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 228924..229002 17..95 100 -> Plus
arm_3R 230191..230361 96..266 100 -> Plus
arm_3R 230423..231141 267..985 100 -> Plus
arm_3R 231202..231270 986..1054 100 -> Plus
arm_3R 231323..231533 1055..1265 100 -> Plus
arm_3R 231589..231974 1266..1653 99   Plus

BO08586.pep Sequence

Translation from 16 to 1669

> BO08586.pep
MEDQSNAAPAVAAENGGNTAQEVSSTTQPIEPTKRSLRVQTWKKIQEGKV
GIGFNNIFNRIPSFVGADKAAALFANEEEFKKAQHIKVNIDRVLHEFKEL
ALLADKSVYLPSTRESSALCLKVDVLADATEEQKKEALRVQDIQKFRSEI
GLDSGLKLDIVVIGSVVVSREGYRIGRGNGFADLDIGLLIELGAITPKTI
IVTIVHDMQVVDSLPPNLFQKYDTPVDIIATPTEIIRVPKRLSFPNGVYW
ELLSERRLKILPVLQQLKEREEKAGKSISLKEEDTDVEQHQNNRRRRGPV
RRRIQRGNPGRTTSQTDNEQPQGETAQKRTPRRKGRFVNRRRRTTKSEGD
QSGVEAGAKTDDRKLPEAGTDERRSKKNKNSDFCIKLTNLSRDIRVKDLK
SELRKRECTPMSISWKGHFGKCFLHFGNRKGVPSTQDDMDKVLKSLNDLS
LTITTGGETAPAAAAGEGGEKAESAETATPVQTKTILVNVELIQFGEKKS
ASSTGANAGAGEDGKADAQNGGEAVTVAGGDVGGARIEAVDTTTVASFLD
H

BO08586.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:58:43
Subject Length Description Subject Range Query Range Score Percent Strand
lost-PA 545 CG14648-PA 1..545 1..545 2759 100 Plus