Clone BO08587 Report

Search the DGRC for BO08587

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:85
Well:87
Vector:pDNR-Dual
Associated Gene/TranscriptCG4164-RA
Protein status:BO08587.pep: validated full length
Sequenced Size:1096

Clone Sequence Records

BO08587.3prime Sequence

955 bp (847 high quality bases) assembled on 2006-01-06

> BO08587.3prime
ATGGTCTAGAAAGCTTGCCAGTCCATTGTATATGCGATTGATGGAGGATT
GGTCGAGTATTTTCTTGAGCGCTTCCTTGTCCTCCTCCGTAAGATCCTTC
TTGGGGAACTCCACATCGAAGGTGATGTACAGGTTGCCGGTGAGGTTGTT
GTTCTCAAAGTTGGGCATGCCCTCGCCCTTCTTGCGGATTCTAGCGCCGG
GCCACGTTACCTTCTCTCTCGTGACGGGCACCAGGTGTCCATCAAGGTGC
TTGATCTCCATGGAGAAGCCGACAAGGGCATCCTGCAGACTGATGGTCAC
GTTCGTGTACAGATCATCATTCTTGCGCAGGAATCGCGGATGCGGCATTT
GTTGAACCCGCACAATGAGGTCGCCGGGCTCCCCATCGATATGTGGCTCC
CCCTCGGCCACGAACCTCGTCTCTTGGCCGTCGACCATGCCCTGTTCCAC
CTCGATCTCCAATGTGCGCTCCTCGTTGACTAGCTTCACGTTGGGACACT
CGTCGCACACCGTCTGTTGGATCATCTGGAAGCGCCCGGGTCCAAGGTTC
CGGGTGACCATCTCCTGGCGGCAGTTGCATTTCCTGGTGCCTGAGGCGGG
TTTCGTTACAGGCTTGTTCCTCACAATTTCCACAAAGTTTCCGGAGTATA
GCTCCTCCAGGGAAACGTACAAGTCCATTACGATATCGGCGCCTCGCGGA
GCATCTTGCTGCTGGCCATCACCACCGAAGTGAAAGCCGAAGTCCCCAAA
GAAGCTAGAGAACGGATCACCACCGTGATCCATCATGCCCTCCTTCTTGA
GGCATTCCTCGCCGCAGCGGTCGTAGGTCTTCCGTTTGTCCGGATTGGAG
AGGACTTCGTAGGCCGCTCCCAGGTCCTGGAACTTTGTGGAGGCATCCGG
GTCGTCTTTGTTCTATCCGGATGCAGCTCCTTGNCCAACGGCGATACGCC
TTTTC

BO08587.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:27:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG4164-PA 1065 CG4164-RA 167..1062 914..19 4455 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG4164-RA 1488 CG4164-RA 281..1216 952..19 4604 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:38:55
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 453388..454270 952..72 4289 99.5 Minus
2L 23513712 2L 454803..454929 198..72 605 98.4 Minus
2L 23513712 2L 454987..455041 73..19 275 100 Minus
2L 23513712 2L 454328..454382 73..19 275 100 Minus
Blast to na_te.dros performed 2015-02-10 23:38:58
Subject Length Description Subject Range Query Range Score Percent Strand
aurora-element 4263 aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). 1348..1483 620..483 126 57.6 Minus
Dsim\ninja 6644 Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). 2230..2365 620..483 109 55.4 Minus

BO08587.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:51:20 Download gff for BO08587.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4164-PA 123..1065 16..955 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:47:42 Download gff for BO08587.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4164-PA 123..1065 16..955 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:05:09 Download gff for BO08587.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4164-RA 277..1220 15..955 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:02:08 Download gff for BO08587.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4164-RA 277..1220 15..955 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:02:08 Download gff for BO08587.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 453384..454270 72..955 99 -> Minus
2L 454330..454386 15..71 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:05:09 Download gff for BO08587.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 453384..454270 72..955 99 -> Minus
arm_2L 454330..454386 15..71 96   Minus

BO08587.5prime Sequence

941 bp (842 high quality bases) assembled on 2006-01-06

> BO08587.5prime
GAAGTTATCAGTCGACATGCAGCTTATCAAGTGCTTGGTTATAATTCAGC
TGTCCCTCTTGCTGGTGGAGGAGTCATTTGCCGGCCGGGACTTCTACAAA
ATACTGAACGTAAAGAAAAACGCCAACACGAACGAAGTGAAGAAGGCGTA
TCGCCGTTTGGCCAAGGAGCTGCATCCGGATAAGAACAAGGACGACCCGG
ATGCCTCCACAAAGTTCCAGGACCTGGGAGCGGCCTACGAAGTCCTCTCC
AATCCGGACAAACGGAAGACCTACGACCGCTGCGGCGAGGAATGCCTCAA
GAAGGAGGGCATGATGGATCACGGTGGTGATCCGTTCTCTAGCTTCTTTG
GGGACTTCGGCTTTCACTTCGGTGGTGATGGCCAGCAGCAAGATGCTCCG
CGAGGCGCCGATATCGTAATGGACTTGTACGTTTCCCTGGAGGAGCTATA
CTCCGGAAACTTTGTGGAAATTGTGAGGAACAAGCCTGTAACGAAACCCG
CCTCAGGCACCAGGAAATGCAACTGCCGCCAGGAGATGGTCACCCGGAAC
CTTGGACCCGGGCGCTTCCAGATGATCCAACAGACGGTGTGCGACGAGTG
TCCCAACGTGAAGCTAGTCAACGAGGAGCGCACATTGGAGATCGAGGTGG
AACAGGGCATGGTCGACGGCCAAGAGACGAGGTTCGTGGCCGAGGGGGAG
CCACATATCGATGGGGAGCCCGGCGACCTCATTGTGCGGGTTCAACAAAT
GCCGCATCCGCGATTCCTGCGCAAGAATGATGATCTGTACACGAACGTGA
CCATCAGTCTGCAGGATGCCCTTGTCGGCTTCTCCATGGAGATCAAGCAC
CTTGATGGACACCTGGTGCCCGTCACGAGAGAGAAAGTAACGTGGCCCGC
CGCTAGAATCCGCAAGAAGGGCGAGGGCATGCCCAACTTTG

BO08587.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:27:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG4164-PA 1065 CG4164-RA 1..925 17..941 4575 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:51:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG4164-RA 1488 CG4164-RA 151..1079 13..941 4600 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:51:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 453258..454186 13..941 4600 99.7 Plus
Blast to na_te.dros performed 2015-02-12 05:51:39
Subject Length Description Subject Range Query Range Score Percent Strand
aurora-element 4263 aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). 1348..1483 477..614 126 57.6 Plus
Dsim\ninja 6644 Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). 2230..2365 477..614 109 55.4 Plus

BO08587.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:51:21 Download gff for BO08587.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4164-PA 1..925 17..941 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:47:43 Download gff for BO08587.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4164-PA 1..925 17..941 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:59:34 Download gff for BO08587.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4164-RA 151..1079 13..941 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:00:59 Download gff for BO08587.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4164-RA 151..1079 13..941 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:00:59 Download gff for BO08587.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 453258..454186 13..941 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:59:34 Download gff for BO08587.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 453258..454186 13..941 99   Plus

BO08587.complete Sequence

1096 bp (1096 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ631249

> BO08587.complete
GAAGTTATCAGTCGACATGCAGCTTATCAAGTGCTTGGTTATAATTCAGC
TGTCCCTCTTGCTGGTGGAGGAGTCATTTGCCGGCCGGGACTTCTACAAA
ATACTGAACGTAAAGAAAAACGCCAACACGAACGAAGTGAAGAAGGCGTA
TCGCCGTTTGGCCAAGGAGCTGCATCCGGATAAGAACAAGGACGACCCGG
ATGCCTCCACAAAGTTCCAGGACCTGGGAGCGGCCTACGAAGTCCTCTCC
AATCCGGACAAACGGAAGACCTACGACCGCTGCGGCGAGGAATGCCTCAA
GAAGGAGGGCATGATGGATCACGGTGGTGATCCGTTCTCTAGCTTCTTTG
GGGACTTCGGCTTTCACTTCGGTGGTGATGGCCAGCAGCAAGATGCTCCG
CGAGGCGCCGATATCGTAATGGACTTGTACGTTTCCCTGGAGGAGCTATA
CTCCGGAAACTTTGTGGAAATTGTGAGGAACAAGCCTGTAACGAAACCCG
CCTCAGGCACCAGGAAATGCAACTGCCGCCAGGAGATGGTCACCCGGAAC
CTTGGACCCGGGCGCTTCCAGATGATCCAACAGACGGTGTGCGACGAGTG
TCCCAACGTGAAGCTAGTCAACGAGGAGCGCACATTGGAGATCGAGGTGG
AACAGGGCATGGTCGACGGCCAAGAGACGAGGTTCGTGGCCGAGGGGGAG
CCACATATCGATGGGGAGCCCGGCGACCTCATTGTGCGGGTTCAACAAAT
GCCGCATCCGCGATTCCTGCGCAAGAATGATGATCTGTACACGAACGTGA
CCATCAGTCTGCAGGATGCCCTTGTCGGCTTCTCCATGGAGATCAAGCAC
CTTGATGGACACCTGGTGCCCGTCACGAGAGAGAAGGTAACGTGGCCCGG
CGCTAGAATCCGCAAGAAGGGCGAGGGCATGCCCAACTTTGAGAACAACA
ACCTCACCGGCAACCTGTACATCACCTTCGATGTGGAGTTCCCCAAGAAG
GATCTTACGGAGGAGGACAAGGAAGCGCTCAAGAAAATACTCGACCAATC
CTCCATCAATCGCATATACAATGGACTGGCAAGCTTTCTAGACCAT

BO08587.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:42:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG4164-RA 1065 CG4164-PA 1..1062 17..1078 5310 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:42:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG4164-RA 1488 CG4164-RA 151..1216 13..1078 5315 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:42:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 453258..454270 13..1025 5050 99.9 Plus
2L 23513712 2L 454803..454929 899..1025 605 98.4 Plus
2L 23513712 2L 454328..454382 1024..1078 275 100 Plus
2L 23513712 2L 454987..455041 1024..1078 275 100 Plus
Blast to na_te.dros performed 2014-11-27 07:42:20
Subject Length Description Subject Range Query Range Score Percent Strand
aurora-element 4263 aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). 1348..1483 477..614 126 57.6 Plus

BO08587.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:11:25 Download gff for BO08587.complete
Subject Subject Range Query Range Percent Splice Strand
CG4164-RA 1..1065 17..1081 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:32:12 Download gff for BO08587.complete
Subject Subject Range Query Range Percent Splice Strand
CG4164-RA 148..1217 13..1082 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:52:12 Download gff for BO08587.complete
Subject Subject Range Query Range Percent Splice Strand
CG4164-RA 155..1216 17..1080 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:11:25 Download gff for BO08587.complete
Subject Subject Range Query Range Percent Splice Strand
CG4164-RA 148..1217 13..1082 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:03:07 Download gff for BO08587.complete
Subject Subject Range Query Range Percent Splice Strand
CG4164-RA 155..1216 17..1080 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:03:07 Download gff for BO08587.complete
Subject Subject Range Query Range Percent Splice Strand
2L 453262..454270 17..1025 100 -> Plus
2L 454330..454382 1026..1080 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:52:12 Download gff for BO08587.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 453262..454270 17..1025 100 -> Plus
arm_2L 454330..454382 1026..1080 96   Plus

BO08587.pep Sequence

Translation from 16 to 1096

> BO08587.pep
MQLIKCLVIIQLSLLLVEESFAGRDFYKILNVKKNANTNEVKKAYRRLAK
ELHPDKNKDDPDASTKFQDLGAAYEVLSNPDKRKTYDRCGEECLKKEGMM
DHGGDPFSSFFGDFGFHFGGDGQQQDAPRGADIVMDLYVSLEELYSGNFV
EIVRNKPVTKPASGTRKCNCRQEMVTRNLGPGRFQMIQQTVCDECPNVKL
VNEERTLEIEVEQGMVDGQETRFVAEGEPHIDGEPGDLIVRVQQMPHPRF
LRKNDDLYTNVTISLQDALVGFSMEIKHLDGHLVPVTREKVTWPGARIRK
KGEGMPNFENNNLTGNLYITFDVEFPKKDLTEEDKEALKKILDQSSINRI
YNGLASFLDH

BO08587.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:19:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG4164-PA 354 CG4164-PA 1..354 1..354 1870 100 Plus
Droj2-PE 403 CG8863-PE 7..336 26..327 445 36.5 Plus
Droj2-PD 403 CG8863-PD 7..336 26..327 445 36.5 Plus
Droj2-PC 403 CG8863-PC 7..336 26..327 445 36.5 Plus
Droj2-PB 403 CG8863-PB 7..336 26..327 445 36.5 Plus