Clone Sequence Records
BO08587.3prime Sequence
955 bp (847 high quality bases) assembled on 2006-01-06
> BO08587.3prime
ATGGTCTAGAAAGCTTGCCAGTCCATTGTATATGCGATTGATGGAGGATT
GGTCGAGTATTTTCTTGAGCGCTTCCTTGTCCTCCTCCGTAAGATCCTTC
TTGGGGAACTCCACATCGAAGGTGATGTACAGGTTGCCGGTGAGGTTGTT
GTTCTCAAAGTTGGGCATGCCCTCGCCCTTCTTGCGGATTCTAGCGCCGG
GCCACGTTACCTTCTCTCTCGTGACGGGCACCAGGTGTCCATCAAGGTGC
TTGATCTCCATGGAGAAGCCGACAAGGGCATCCTGCAGACTGATGGTCAC
GTTCGTGTACAGATCATCATTCTTGCGCAGGAATCGCGGATGCGGCATTT
GTTGAACCCGCACAATGAGGTCGCCGGGCTCCCCATCGATATGTGGCTCC
CCCTCGGCCACGAACCTCGTCTCTTGGCCGTCGACCATGCCCTGTTCCAC
CTCGATCTCCAATGTGCGCTCCTCGTTGACTAGCTTCACGTTGGGACACT
CGTCGCACACCGTCTGTTGGATCATCTGGAAGCGCCCGGGTCCAAGGTTC
CGGGTGACCATCTCCTGGCGGCAGTTGCATTTCCTGGTGCCTGAGGCGGG
TTTCGTTACAGGCTTGTTCCTCACAATTTCCACAAAGTTTCCGGAGTATA
GCTCCTCCAGGGAAACGTACAAGTCCATTACGATATCGGCGCCTCGCGGA
GCATCTTGCTGCTGGCCATCACCACCGAAGTGAAAGCCGAAGTCCCCAAA
GAAGCTAGAGAACGGATCACCACCGTGATCCATCATGCCCTCCTTCTTGA
GGCATTCCTCGCCGCAGCGGTCGTAGGTCTTCCGTTTGTCCGGATTGGAG
AGGACTTCGTAGGCCGCTCCCAGGTCCTGGAACTTTGTGGAGGCATCCGG
GTCGTCTTTGTTCTATCCGGATGCAGCTCCTTGNCCAACGGCGATACGCC
TTTTC
BO08587.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:27:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4164-PA | 1065 | CG4164-RA | 167..1062 | 914..19 | 4455 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4164-RA | 1488 | CG4164-RA | 281..1216 | 952..19 | 4604 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:38:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 453388..454270 | 952..72 | 4289 | 99.5 | Minus |
2L | 23513712 | 2L | 454803..454929 | 198..72 | 605 | 98.4 | Minus |
2L | 23513712 | 2L | 454987..455041 | 73..19 | 275 | 100 | Minus |
2L | 23513712 | 2L | 454328..454382 | 73..19 | 275 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 23:38:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
aurora-element | 4263 | aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). | 1348..1483 | 620..483 | 126 | 57.6 | Minus |
Dsim\ninja | 6644 | Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). | 2230..2365 | 620..483 | 109 | 55.4 | Minus |
BO08587.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:51:20 Download gff for
BO08587.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4164-PA | 123..1065 | 16..955 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:47:42 Download gff for
BO08587.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4164-PA | 123..1065 | 16..955 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:05:09 Download gff for
BO08587.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4164-RA | 277..1220 | 15..955 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:02:08 Download gff for
BO08587.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4164-RA | 277..1220 | 15..955 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:02:08 Download gff for
BO08587.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 453384..454270 | 72..955 | 99 | -> | Minus |
2L | 454330..454386 | 15..71 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:05:09 Download gff for
BO08587.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 453384..454270 | 72..955 | 99 | -> | Minus |
arm_2L | 454330..454386 | 15..71 | 96 | | Minus |
BO08587.5prime Sequence
941 bp (842 high quality bases) assembled on 2006-01-06
> BO08587.5prime
GAAGTTATCAGTCGACATGCAGCTTATCAAGTGCTTGGTTATAATTCAGC
TGTCCCTCTTGCTGGTGGAGGAGTCATTTGCCGGCCGGGACTTCTACAAA
ATACTGAACGTAAAGAAAAACGCCAACACGAACGAAGTGAAGAAGGCGTA
TCGCCGTTTGGCCAAGGAGCTGCATCCGGATAAGAACAAGGACGACCCGG
ATGCCTCCACAAAGTTCCAGGACCTGGGAGCGGCCTACGAAGTCCTCTCC
AATCCGGACAAACGGAAGACCTACGACCGCTGCGGCGAGGAATGCCTCAA
GAAGGAGGGCATGATGGATCACGGTGGTGATCCGTTCTCTAGCTTCTTTG
GGGACTTCGGCTTTCACTTCGGTGGTGATGGCCAGCAGCAAGATGCTCCG
CGAGGCGCCGATATCGTAATGGACTTGTACGTTTCCCTGGAGGAGCTATA
CTCCGGAAACTTTGTGGAAATTGTGAGGAACAAGCCTGTAACGAAACCCG
CCTCAGGCACCAGGAAATGCAACTGCCGCCAGGAGATGGTCACCCGGAAC
CTTGGACCCGGGCGCTTCCAGATGATCCAACAGACGGTGTGCGACGAGTG
TCCCAACGTGAAGCTAGTCAACGAGGAGCGCACATTGGAGATCGAGGTGG
AACAGGGCATGGTCGACGGCCAAGAGACGAGGTTCGTGGCCGAGGGGGAG
CCACATATCGATGGGGAGCCCGGCGACCTCATTGTGCGGGTTCAACAAAT
GCCGCATCCGCGATTCCTGCGCAAGAATGATGATCTGTACACGAACGTGA
CCATCAGTCTGCAGGATGCCCTTGTCGGCTTCTCCATGGAGATCAAGCAC
CTTGATGGACACCTGGTGCCCGTCACGAGAGAGAAAGTAACGTGGCCCGC
CGCTAGAATCCGCAAGAAGGGCGAGGGCATGCCCAACTTTG
BO08587.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:27:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4164-PA | 1065 | CG4164-RA | 1..925 | 17..941 | 4575 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:51:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4164-RA | 1488 | CG4164-RA | 151..1079 | 13..941 | 4600 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:51:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 453258..454186 | 13..941 | 4600 | 99.7 | Plus |
Blast to na_te.dros performed 2015-02-12 05:51:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
aurora-element | 4263 | aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). | 1348..1483 | 477..614 | 126 | 57.6 | Plus |
Dsim\ninja | 6644 | Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). | 2230..2365 | 477..614 | 109 | 55.4 | Plus |
BO08587.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:51:21 Download gff for
BO08587.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4164-PA | 1..925 | 17..941 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:47:43 Download gff for
BO08587.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4164-PA | 1..925 | 17..941 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:59:34 Download gff for
BO08587.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4164-RA | 151..1079 | 13..941 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:00:59 Download gff for
BO08587.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4164-RA | 151..1079 | 13..941 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:00:59 Download gff for
BO08587.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 453258..454186 | 13..941 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:59:34 Download gff for
BO08587.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 453258..454186 | 13..941 | 99 | | Plus |
BO08587.complete Sequence
1096 bp (1096 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631249
> BO08587.complete
GAAGTTATCAGTCGACATGCAGCTTATCAAGTGCTTGGTTATAATTCAGC
TGTCCCTCTTGCTGGTGGAGGAGTCATTTGCCGGCCGGGACTTCTACAAA
ATACTGAACGTAAAGAAAAACGCCAACACGAACGAAGTGAAGAAGGCGTA
TCGCCGTTTGGCCAAGGAGCTGCATCCGGATAAGAACAAGGACGACCCGG
ATGCCTCCACAAAGTTCCAGGACCTGGGAGCGGCCTACGAAGTCCTCTCC
AATCCGGACAAACGGAAGACCTACGACCGCTGCGGCGAGGAATGCCTCAA
GAAGGAGGGCATGATGGATCACGGTGGTGATCCGTTCTCTAGCTTCTTTG
GGGACTTCGGCTTTCACTTCGGTGGTGATGGCCAGCAGCAAGATGCTCCG
CGAGGCGCCGATATCGTAATGGACTTGTACGTTTCCCTGGAGGAGCTATA
CTCCGGAAACTTTGTGGAAATTGTGAGGAACAAGCCTGTAACGAAACCCG
CCTCAGGCACCAGGAAATGCAACTGCCGCCAGGAGATGGTCACCCGGAAC
CTTGGACCCGGGCGCTTCCAGATGATCCAACAGACGGTGTGCGACGAGTG
TCCCAACGTGAAGCTAGTCAACGAGGAGCGCACATTGGAGATCGAGGTGG
AACAGGGCATGGTCGACGGCCAAGAGACGAGGTTCGTGGCCGAGGGGGAG
CCACATATCGATGGGGAGCCCGGCGACCTCATTGTGCGGGTTCAACAAAT
GCCGCATCCGCGATTCCTGCGCAAGAATGATGATCTGTACACGAACGTGA
CCATCAGTCTGCAGGATGCCCTTGTCGGCTTCTCCATGGAGATCAAGCAC
CTTGATGGACACCTGGTGCCCGTCACGAGAGAGAAGGTAACGTGGCCCGG
CGCTAGAATCCGCAAGAAGGGCGAGGGCATGCCCAACTTTGAGAACAACA
ACCTCACCGGCAACCTGTACATCACCTTCGATGTGGAGTTCCCCAAGAAG
GATCTTACGGAGGAGGACAAGGAAGCGCTCAAGAAAATACTCGACCAATC
CTCCATCAATCGCATATACAATGGACTGGCAAGCTTTCTAGACCAT
BO08587.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:42:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4164-RA | 1065 | CG4164-PA | 1..1062 | 17..1078 | 5310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:42:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4164-RA | 1488 | CG4164-RA | 151..1216 | 13..1078 | 5315 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:42:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 453258..454270 | 13..1025 | 5050 | 99.9 | Plus |
2L | 23513712 | 2L | 454803..454929 | 899..1025 | 605 | 98.4 | Plus |
2L | 23513712 | 2L | 454328..454382 | 1024..1078 | 275 | 100 | Plus |
2L | 23513712 | 2L | 454987..455041 | 1024..1078 | 275 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 07:42:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
aurora-element | 4263 | aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). | 1348..1483 | 477..614 | 126 | 57.6 | Plus |
BO08587.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:11:25 Download gff for
BO08587.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4164-RA | 1..1065 | 17..1081 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:32:12 Download gff for
BO08587.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4164-RA | 148..1217 | 13..1082 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:52:12 Download gff for
BO08587.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4164-RA | 155..1216 | 17..1080 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:11:25 Download gff for
BO08587.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4164-RA | 148..1217 | 13..1082 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:03:07 Download gff for
BO08587.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4164-RA | 155..1216 | 17..1080 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:03:07 Download gff for
BO08587.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 453262..454270 | 17..1025 | 100 | -> | Plus |
2L | 454330..454382 | 1026..1080 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:52:12 Download gff for
BO08587.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 453262..454270 | 17..1025 | 100 | -> | Plus |
arm_2L | 454330..454382 | 1026..1080 | 96 | | Plus |
BO08587.pep Sequence
Translation from 16 to 1096
> BO08587.pep
MQLIKCLVIIQLSLLLVEESFAGRDFYKILNVKKNANTNEVKKAYRRLAK
ELHPDKNKDDPDASTKFQDLGAAYEVLSNPDKRKTYDRCGEECLKKEGMM
DHGGDPFSSFFGDFGFHFGGDGQQQDAPRGADIVMDLYVSLEELYSGNFV
EIVRNKPVTKPASGTRKCNCRQEMVTRNLGPGRFQMIQQTVCDECPNVKL
VNEERTLEIEVEQGMVDGQETRFVAEGEPHIDGEPGDLIVRVQQMPHPRF
LRKNDDLYTNVTISLQDALVGFSMEIKHLDGHLVPVTREKVTWPGARIRK
KGEGMPNFENNNLTGNLYITFDVEFPKKDLTEEDKEALKKILDQSSINRI
YNGLASFLDH
BO08587.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:19:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4164-PA | 354 | CG4164-PA | 1..354 | 1..354 | 1870 | 100 | Plus |
Droj2-PE | 403 | CG8863-PE | 7..336 | 26..327 | 445 | 36.5 | Plus |
Droj2-PD | 403 | CG8863-PD | 7..336 | 26..327 | 445 | 36.5 | Plus |
Droj2-PC | 403 | CG8863-PC | 7..336 | 26..327 | 445 | 36.5 | Plus |
Droj2-PB | 403 | CG8863-PB | 7..336 | 26..327 | 445 | 36.5 | Plus |