Clone Sequence Records
BO08588.3prime Sequence
872 bp (840 high quality bases) assembled on 2006-01-06
> BO08588.3prime
ATGGTCTAGAAAGCTTGCGGTGTCTGCATCATTGAAGCTCATTGCTGCAT
CGAAACTATCCACGATGGTTTCCATGCGCTCATGATGCTCAAATCGGGCG
AACTTTCGCGCAAATTTCCGGCCGGATCGTGCGGTACTGTACCTCCTCGA
GAAGCGCGCACGCCGAAAGAAACGGAAGCGCGTGTCCTCCTCCTCCTCGT
CGTACTCCGGCGCAGACACGGAATCCTCGTCCGTTTCGCGCAGAAATTCC
TTCGGATCCCGATGAATCTTAAAGATCTTGGTGGCCGTCGCCCCGTTTAA
CTTCGATATGGTGCGCGAGGCATTGAGTATTCCACTGGAATTCGAAATGG
AATTGCTGCGGTTCTTAATAGCCGTCAGCCGGTTTGTGATGGACACCACG
TTGAATAACTTTGACAGCTCCGAGTCGACGCAGCGCGATTCGCGACGCAG
GTTCTTGCCATTCTTTACGTAGATGAAGTGGTTCAAGGGGCTCTGGCTCA
AACTTTGGCTATCCAAGGGATGGCTTCCAGCGGAGCAGGTGGGCGAGATG
GAGACGGATACGGAGTTGCTGCTGCCGCCGCACCCGCTGGTCAGCAGAGT
GGGCGTGGAGGGCGGCGCTGGCGGTGGCACATGCGGCATTGTGTAGCAAC
GCTGGCGGCCCGAGCTCAATGAGGAACCCCCGCCCGCCGGCCCGTCGTAC
AGGTTGGTCACGTTGTAGCGGCTCAGGCGGCACAGCGACGTGGACTCCGG
TTCCAGTTCCGCCTCCGGGTCGTGGCTGGTGGGCATGTCCATGGCCTGCA
GCAAGCCTTCGACCTCCATGTACTGGCTGTCGGTGGTGAGACGGTGTGTT
TTGTGCATGTCGACTGATAACT
BO08588.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:27:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8617-PA | 843 | CG8617-RA | 1..840 | 858..19 | 4200 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:07:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8617-RA | 1328 | CG8617-RA | 84..923 | 858..19 | 4200 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:07:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14356174..14356953 | 19..798 | 3900 | 100 | Plus |
| 2R | 25286936 | 2R | 14357135..14357198 | 795..858 | 320 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 18:07:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmir\TRIM | 3111 | Dmir\TRIM DMTRIM 3126bp Derived from X59239 (Rel. 35, Last updated, Version 3). | 2781..2816 | 202..167 | 117 | 80.6 | Minus |
BO08588.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:51:21 Download gff for
BO08588.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8617-PA | 1..843 | 16..858 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:47:44 Download gff for
BO08588.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8617-PA | 1..843 | 16..858 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:33:49 Download gff for
BO08588.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8617-RA | 84..923 | 19..858 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:36:46 Download gff for
BO08588.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8617-RA | 84..923 | 19..858 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:36:46 Download gff for
BO08588.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14356174..14356950 | 19..795 | 100 | <- | Plus |
| 2R | 14357136..14357198 | 796..858 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:33:49 Download gff for
BO08588.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10243679..10244455 | 19..795 | 100 | <- | Plus |
| arm_2R | 10244641..10244703 | 796..858 | 100 | | Plus |
BO08588.5prime Sequence
872 bp (827 high quality bases) assembled on 2006-01-06
> BO08588.5prime
GAAGTTATCAGTCGACATGCACAAAACACACCGTCTCACCACCGACAGCC
AGTACATGGAGGTCGAAGGCTTGCTGCAGGCCATGGACATGCCCACCAGC
CACGACCCGGAGGCGGAACTGGAACCGGAGTCCACGTCGCTGTGCCGCCT
GAGCCGCTACAACGTGACCAACCTGTACGACGGGCCGGCGGGCGGGGGTT
CCTCATTGAGCTCGGGCCGCCAGCGTTGCTACACAATGCCGCATGTGCCA
CCGCCAGCGCCGCCCTCCACGCCCACTCTGCTGACCAGCGGGTGCGGCGG
CAGCAGCAACTCCGTATCCGTCTCCATCTCGCCCACCTGCTCCGCTGGAA
GCCATCCCTTGGATAGCCAAAGTTTGAGCCAGAGCCCCTTGAACCACTTC
ATCTACGTAAAGAATGGCAAGAACCTGCGTCGCGAATCGCGCTGCGTCGA
CTCGGAGCTGTCAAAGTTATTCAACGTGGTGTCCATCACAAACCGGCTGA
CGGCTATTAAGAACCGCAGCAATTCCATTTCGAATTCCAGTGGAATACTC
AATGCCTCGCGCACCATATCGAAGTTAAACGGGGCGACGGCCACCAAGAT
CTTTAAGATTCATCGGGATCCGAAGGAATTTCTGCGCGAAACGGACGAGG
ATTCCGTGTCTGCGCCGGAGTACGACGAGGAGGAGGAGGACACGCGCTTC
CGTTTCTTTCGGCGTGCGCGCTTCTCGAGGAGGTACAGTACCGCACGATC
CGGCCGGAAATTTGCGCGAAAGTTCGCCCGATTTGAGCATCATGAGCGCA
TGGAAAACATCGTGGATAGTTTCGATGCAGCAATGAGCTTCAATGATGCA
GACACCGCAAGCTTTCTAGACC
BO08588.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:27:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8617-PA | 843 | CG8617-RA | 1..840 | 17..856 | 4175 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:01:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8617-RA | 1328 | CG8617-RA | 84..923 | 17..856 | 4185 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:00:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14356174..14356953 | 856..77 | 3885 | 99.9 | Minus |
| 2R | 25286936 | 2R | 14357135..14357198 | 80..17 | 320 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 11:00:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmir\TRIM | 3111 | Dmir\TRIM DMTRIM 3126bp Derived from X59239 (Rel. 35, Last updated, Version 3). | 2781..2816 | 673..708 | 117 | 80.6 | Plus |
BO08588.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:51:22 Download gff for
BO08588.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8617-PA | 1..843 | 17..859 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:47:47 Download gff for
BO08588.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8617-PA | 1..843 | 17..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:02:33 Download gff for
BO08588.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8617-RA | 84..923 | 17..856 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:39:04 Download gff for
BO08588.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8617-RA | 84..923 | 17..856 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:39:04 Download gff for
BO08588.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14356174..14356950 | 80..856 | 99 | <- | Minus |
| 2R | 14357136..14357198 | 17..79 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:02:33 Download gff for
BO08588.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10243679..10244455 | 80..856 | 99 | <- | Minus |
| arm_2R | 10244641..10244703 | 17..79 | 100 | | Minus |
BO08588.complete Sequence
874 bp (874 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631250
> BO08588.complete
GAAGTTATCAGTCGACATGCACAAAACACACCGTCTCACCACCGACAGCC
AGTACATGGAGGTCGAAGGCTTGCTGCAGGCCATGGACATGCCCACCAGC
CACGACCCGGAGGCGGAACTGGAACCGGAGTCCACGTCGCTGTGCCGCCT
GAGCCGCTACAACGTGACCAACCTGTACGACGGGCCGGCGGGCGGGGGTT
CCTCATTGAGCTCGGGCCGCCAGCGTTGCTACACAATGCCGCATGTGCCA
CCGCCAGCGCCGCCCTCCACGCCCACTCTGCTGACCAGCGGGTGCGGCGG
CAGCAGCAACTCCGTATCCGTCTCCATCTCGCCCACCTGCTCCGCTGGAA
GCCATCCCTTGGATAGCCAAAGTTTGAGCCAGAGCCCCTTGAACCACTTC
ATCTACGTAAAGAATGGCAAGAACCTGCGTCGCGAATCGCGCTGCGTCGA
CTCGGAGCTGTCAAAGTTATTCAACGTGGTGTCCATCACAAACCGGCTGA
CGGCTATTAAGAACCGCAGCAATTCCATTTCGAATTCCAGTGGAATACTC
AATGCCTCGCGCACCATATCGAAGTTAAACGGGGCGACGGCCACCAAGAT
CTTTAAGATTCATCGGGATCCGAAGGAATTTCTGCGCGAAACGGACGAGG
ATTCCGTGTCTGCGCCGGAGTACGACGAGGAGGAGGAGGACACGCGCTTC
CGTTTCTTTCGGCGTGCGCGCTTCTCGAGGAGGTACAGTACCGCACGATC
CGGCCGGAAATTTGCGCGAAAGTTCGCCCGATTTGAGCATCATGAGCGCA
TGGAAACCATCGTGGATAGTTTCGATGCAGCAATGAGCTTCAATGATGCA
GACACCGCAAGCTTTCTAGACCAT
BO08588.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:33:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8617-RA | 843 | CG8617-PA | 1..840 | 17..856 | 4200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:33:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8617-RA | 1328 | CG8617-RA | 84..923 | 17..856 | 4200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:33:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14356174..14356953 | 856..77 | 3900 | 100 | Minus |
| 2R | 25286936 | 2R | 14357135..14357198 | 80..17 | 320 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 23:33:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmir\TRIM | 3111 | Dmir\TRIM DMTRIM 3126bp Derived from X59239 (Rel. 35, Last updated, Version 3). | 2781..2816 | 673..708 | 117 | 80.6 | Plus |
BO08588.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:11:26 Download gff for
BO08588.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8617-RA | 1..843 | 17..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:32:13 Download gff for
BO08588.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8617-RA | 87..926 | 17..856 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:31:40 Download gff for
BO08588.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8617-RA | 84..923 | 17..858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:11:26 Download gff for
BO08588.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8617-RA | 87..926 | 17..856 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:03:08 Download gff for
BO08588.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8617-RA | 84..923 | 17..858 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:03:08 Download gff for
BO08588.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14357136..14357198 | 17..79 | 100 | | Minus |
| 2R | 14356171..14356950 | 80..858 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:31:40 Download gff for
BO08588.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10243676..10244455 | 80..858 | 99 | <- | Minus |
| arm_2R | 10244641..10244703 | 17..79 | 100 | | Minus |
BO08588.pep Sequence
Translation from 16 to 874
> BO08588.pep
MHKTHRLTTDSQYMEVEGLLQAMDMPTSHDPEAELEPESTSLCRLSRYNV
TNLYDGPAGGGSSLSSGRQRCYTMPHVPPPAPPSTPTLLTSGCGGSSNSV
SVSISPTCSAGSHPLDSQSLSQSPLNHFIYVKNGKNLRRESRCVDSELSK
LFNVVSITNRLTAIKNRSNSISNSSGILNASRTISKLNGATATKIFKIHR
DPKEFLRETDEDSVSAPEYDEEEEDTRFRFFRRARFSRRYSTARSGRKFA
RKFARFEHHERMETIVDSFDAAMSFNDADTASFLDH
BO08588.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:19:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8617-PA | 280 | CG8617-PA | 1..280 | 1..280 | 1450 | 100 | Plus |
