Clone BO08589 Report

Search the DGRC for BO08589

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:85
Well:89
Vector:pDNR-Dual
Associated Gene/TranscriptCG12608-RA
Protein status:BO08589.pep: validated full length
Sequenced Size:1363

Clone Sequence Records

BO08589.3prime Sequence

901 bp (852 high quality bases) assembled on 2006-01-06

> BO08589.3prime
ATGGTCTAGAAAGCTTGCCTTCTTTTTCTGCTGCTTTGCCTTCCCCTTGG
AGGCTGGAGTGGGTTGCTGCTTGCGCTTCATTGGCTTCCTCTTCCGGTGG
CCGTGATCACTGGAGACATCGCTGTCGCTGTCGGAGAAGTCGTCGCTCTC
CTTTTCTTCCGATGAGTTGCTTTCTTCTGAGGATTCCTCGGCTTTCTGTT
GCGCCTTCTTTGCCTGTATCTTGTTCTTCTTCCCCTTTCCCTTCTTCTTC
TCGGCATCCAGATTCTTATCCTGCTCGTACTCGATGGTCACGAATCCCCG
AGGTGCTGCAGGCTTGGCACTTTGGTCAGACTCCACTTTCGCCTTTGGTT
TCTCCTCCACTTTAATGCGTTGTTCCACCGGTTGGACATTGCCGAACTGG
CGGAGATCCAGCAGGCCCAAGTCGGTGGGTCGGCAGTCCATGAAGCTGCT
GGCAATCTCCTCCAGCTTGCGCGTTTCCATGTCGATCTTCCAGACTTTGA
TTTCACCAGCGCTGGAGACGGTGGCCAGTAATTCGTTCAGATAGGCGATG
GCCTTGACCCTTGCCTCGTGTGCAAGAATGAAGGTGGGTGGTGTATCATC
CTCGTCCTTGAGGGAAATCCAGGCAATGTTGCCGTTGTCCAGGCCAGTTA
AACACTCGTTCCCATCCAGCCAGGTGATGCAAATGGGTTTCGCCGGCATC
TCAATGCGACGCATAACATGAGCGTTCTCGATGCCCCAGATCTCCAGAAC
CAATGGACCGCTAAGTGTGAAGTGATCGCCCTGCTTGGACCACGACAAGC
AGCCCGGTTGGAGACCCAGCGTAGCCTTGTTCTTTAAATTGGTCTTGTAG
GCGACGCGGCCATTGACCAGATCCAGGTGTTCAGCACCTGNTCGCCGCCC
A

BO08589.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:27:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG12608-PA 1332 CG12608-RA 476..1329 872..19 4270 100 Minus
CG9123-PA 1305 CG9123-RA 476..1108 872..240 2665 96.8 Minus
CG9123-PA 1305 CG9123-RA 1124..1302 197..19 745 96.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:31:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG12608-RA 1616 CG12608-RA 580..1463 901..19 4384 99.8 Minus
CG9123-RA 1592 CG9123-RA 583..1439 901..19 3559 93.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:31:27
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15343010..15343507 19..516 2490 100 Plus
X 23542271 X 15343733..15344046 589..901 1509 99.4 Plus
X 23542271 X 15341222..15341535 589..901 1374 96.5 Plus
X 23542271 X 15340707..15340996 227..516 1285 96.2 Plus
X 23542271 X 15340526..15340704 19..197 805 96.6 Plus
X 23542271 X 15343597..15343673 512..588 385 100 Plus
X 23542271 X 15341087..15341162 513..588 350 97.4 Plus
Blast to na_te.dros performed on 2015-02-10 23:31:29 has no hits.

BO08589.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:51:23 Download gff for BO08589.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12608-PA 447..1332 18..900 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:47:48 Download gff for BO08589.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12608-PA 447..1332 18..900 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:33:28 Download gff for BO08589.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12608-RA 581..1469 10..900 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:59:01 Download gff for BO08589.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12608-RA 581..1469 10..900 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:59:01 Download gff for BO08589.3prime
Subject Subject Range Query Range Percent Splice Strand
X 15343011..15343502 20..511 100 <- Plus
X 15343597..15343673 512..588 100 <- Plus
X 15343733..15344045 589..900 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:33:28 Download gff for BO08589.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15237044..15237535 20..511 100 <- Plus
arm_X 15237630..15237706 512..588 100 <- Plus
arm_X 15237766..15238078 589..900 99   Plus

BO08589.5prime Sequence

871 bp (858 high quality bases) assembled on 2006-01-06

> BO08589.5prime
GAAGTTATCAGTCGACATGCCGCCGGAAATGGAGATCATAGTGGGCACCT
ACGAGGAGGTCCTGCTGGGCTTCAAGCTCATCAAATCGCCGACTGACGGC
TTGACCGATTCCGTCAAATTTGAGCTGAAACAGACTTTTGCAGACAGCTC
CCATGCAGGATCCATTACATCGGTGGCCGTGCAGTGGCCTTGGGTGGCCA
GTGGCGGTACCGACGACAGGATCTTCGTCTACGACATGCGCACGCGGAAA
CAGTCGCAGATCATACTCTCGCACGCCGGAAGAGTGAACACACTGAAATT
CACACCTGACCTGTCGCACTTGCTCTCCGGGAGCGACGATGGCCATATGA
TCGCCACACGCGTGGGCAGCTGGACCAAAGAGGGTGATTGGCAGAAGGCC
CATGCCGGACAGGCCGTCACCCACATCAGTTGCCATCCCAGCAGCAAGTT
GGCCTTATCTTTGGGCGGCGACCAGGTGCTGAACACCTGGAATCTGGTCA
ATGGCCGCGTCGCCTACAAGACCAATTTAAAGAACAAGGCTACGCTGGGT
CTCCAACCGGGCTGCTTGTCGTGGTCCAAGCAGGGCGATCACTTCACACT
TAGCGGTCCATTGGTTCTGGAGATCTGGGGCATCGAGAACGCTCATGTTA
TGCGTCGCATTGAGATGCCGGCGAAACCCATTTGCATCACCTGGCTGGAT
GGGAACGAGTGTTTAACTGGCCTGGACAACGGCAACATTGCCTGGATTTC
CCTCAAGGACGAGGATGATACACCACCCACCTTCATTCTTGCACACGAGG
CAAGGGTCAAGGCCATCGCCTATCTGAACGAATTACTGGCCACCGTCTCC
AGCGCTGGTGAAATCAAGTCT

BO08589.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:27:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG12608-PA 1332 CG12608-RA 1..851 17..867 4255 100 Plus
CG9123-PA 1305 CG9123-RA 1..851 17..867 3480 96.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:11:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG12608-RA 1616 CG12608-RA 134..985 16..867 4260 100 Plus
CG9123-RA 1592 CG9123-RA 137..988 16..867 3795 96.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:11:01
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15343733..15344492 775..16 3800 100 Minus
X 23542271 X 15341222..15341981 775..16 3395 96.4 Minus
X 23542271 X 15343597..15343673 852..776 385 100 Minus
X 23542271 X 15341087..15341162 851..776 350 97.4 Minus
Blast to na_te.dros performed on 2015-02-10 20:11:03 has no hits.

BO08589.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:51:24 Download gff for BO08589.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12608-PA 1..856 17..871 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:47:49 Download gff for BO08589.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12608-PA 1..856 17..871 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:29:44 Download gff for BO08589.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12608-RA 134..990 16..871 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:52:13 Download gff for BO08589.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12608-RA 134..990 16..871 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:52:13 Download gff for BO08589.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15343483..15343502 853..871 95 <- Minus
X 15343597..15343673 776..852 100 <- Minus
X 15343733..15344492 16..775 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:29:44 Download gff for BO08589.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15237516..15237535 853..871 95 <- Minus
arm_X 15237630..15237706 776..852 100 <- Minus
arm_X 15237766..15238525 16..775 100   Minus

BO08589.complete Sequence

1363 bp (1363 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ631251

> BO08589.complete
GAAGTTATCAGTCGACATGCCGCCGGAAATGGAGATCATAGTGGGCACCT
ACGAGGAGGTCCTGCTGGGCTTCAAGCTCATCAAATCGCCGACTGACGGC
TTGACCGATTCCGTCAAATTTGAGCTGAAACAGACTTTTGCAGACAGCTC
CCATGCAGGATCCATTACATCGGTGGCCGTGCAGTGGCCTTGGGTGGCCA
GTGGCGGTACCGACGACAGGATCTTCGTCTACGACATGCGCACGCGGAAA
CAGTCGCAGATCATACTCTCGCACGCCGGAAGAGTGAACACACTGAAATT
CACACCTGACCTGTCGCACTTGCTCTCCGGGAGCGACGATGGCCATATGA
TCGCCACACGCGTGGGCAGCTGGACCAAAGAGGGTGATTGGCAGAAGGCC
CATGCCGGACAGGCCGTCACCCACATCAGTTGCCATCCCAGCAGCAAGTT
GGCCTTATCTTTGGGCGGCGACCAGGTGCTGAACACCTGGAATCTGGTCA
ATGGCCGCGTCGCCTACAAGACCAATTTAAAGAACAAGGCTACGCTGGGT
CTCCAACCGGGCTGCTTGTCGTGGTCCAAGCAGGGCGATCACTTCACACT
TAGCGGTCCATTGGTTCTGGAGATCTGGGGCATCGAGAACGCTCATGTTA
TGCGTCGCATTGAGATGCCGGCGAAACCCATTTGCATCACCTGGCTGGAT
GGGAACGAGTGTTTAACTGGCCTGGACAACGGCAACATTGCCTGGATTTC
CCTCAAGGACGAGGATGATACACCACCCACCTTCATTCTTGCACACGAGG
CAAGGGTCAAGGCCATCGCCTATCTGAACGAATTACTGGCCACCGTCTCC
AGCGCTGGTGAAATCAAAGTCTGGAAGATCGACATGGAAACGCGCAAGCT
GGAGGAGATTGCCAGCAGCTTCATGGACTGCCGACCCACCGACTTGGGCC
TGCTGGATCTCCGCCAGTTCGGCAATGTCCAACCGGTGGAACAACGCATT
AAAGTGGAGGAGAAACCAAAGGCGAAAGTGGAGTCTGACCAAAGTGCCAA
GCCTGCAGCACCTCGGGGATTCGTGACCATCGAGTACGAGCAGGATAAGA
ATCTGGATGCCGAGAAGAAGAAGGGAAAGGGGAAGAAGAACAAGATACAG
GCAAAGAAGGCGCAACAGAAAGCCGAGGAATCCTCAGAAGAAAGCAACTC
ATCGGAAGAAAAGGAGAGCGACGACTTCTCCGACAGCGACAGCGATGTCT
CCAGTGATCACGGCCACCGGAAGAGGAAGCCAATGAAGCGCAAGCAGCAA
CCCACTCCAGCCTCCAAGGGGAAGGCAAAGCAGCAGAAAAAGAAGGCAAG
CTTTCTAGACCAT

BO08589.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:46:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG12608-RA 1332 CG12608-PA 1..1329 17..1345 6645 100 Plus
CG9123-RA 1305 CG9123-PA 1..1121 17..1137 4990 96.3 Plus
CG9123-RA 1305 CG9123-PA 1124..1302 1167..1345 805 96.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:46:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG12608-RA 1616 CG12608-RA 134..1463 16..1345 6650 100 Plus
CG9123-RA 1592 CG9123-RA 137..1258 16..1137 4995 96.3 Plus
CG9123-RA 1592 CG9123-RA 1261..1439 1167..1345 805 96.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:46:02
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15343733..15344492 775..16 3800 100 Minus
X 23542271 X 15341222..15341981 775..16 3395 96.4 Minus
X 23542271 X 15343010..15343507 1345..848 2490 100 Minus
X 23542271 X 15340707..15340996 1137..848 1285 96.2 Minus
X 23542271 X 15340526..15340704 1345..1167 805 96.6 Minus
X 23542271 X 15343597..15343673 852..776 385 100 Minus
X 23542271 X 15341087..15341162 851..776 350 97.4 Minus
Blast to na_te.dros performed on 2014-11-27 08:46:04 has no hits.

BO08589.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:11:27 Download gff for BO08589.complete
Subject Subject Range Query Range Percent Splice Strand
CG12608-RA 1..1332 17..1346 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:32:15 Download gff for BO08589.complete
Subject Subject Range Query Range Percent Splice Strand
CG12608-RA 123..1458 16..1354 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:01:48 Download gff for BO08589.complete
Subject Subject Range Query Range Percent Splice Strand
CG12608-RA 135..1452 17..1334 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:11:27 Download gff for BO08589.complete
Subject Subject Range Query Range Percent Splice Strand
CG12608-RA 123..1458 16..1354 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:26:02 Download gff for BO08589.complete
Subject Subject Range Query Range Percent Splice Strand
CG12608-RA 135..1452 17..1334 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:26:02 Download gff for BO08589.complete
Subject Subject Range Query Range Percent Splice Strand
X 15343597..15343673 776..852 100 <- Minus
X 15343021..15343502 853..1334 100 <- Minus
X 15343733..15344491 17..775 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:01:48 Download gff for BO08589.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15237054..15237535 853..1334 100 <- Minus
arm_X 15237630..15237706 776..852 100 <- Minus
arm_X 15237766..15238524 17..775 100   Minus

BO08589.pep Sequence

Translation from 16 to 1363

> BO08589.pep
MPPEMEIIVGTYEEVLLGFKLIKSPTDGLTDSVKFELKQTFADSSHAGSI
TSVAVQWPWVASGGTDDRIFVYDMRTRKQSQIILSHAGRVNTLKFTPDLS
HLLSGSDDGHMIATRVGSWTKEGDWQKAHAGQAVTHISCHPSSKLALSLG
GDQVLNTWNLVNGRVAYKTNLKNKATLGLQPGCLSWSKQGDHFTLSGPLV
LEIWGIENAHVMRRIEMPAKPICITWLDGNECLTGLDNGNIAWISLKDED
DTPPTFILAHEARVKAIAYLNELLATVSSAGEIKVWKIDMETRKLEEIAS
SFMDCRPTDLGLLDLRQFGNVQPVEQRIKVEEKPKAKVESDQSAKPAAPR
GFVTIEYEQDKNLDAEKKKGKGKKNKIQAKKAQQKAEESSEESNSSEEKE
SDDFSDSDSDVSSDHGHRKRKPMKRKQQPTPASKGKAKQQKKKASFLDH

BO08589.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:14:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG12608-PA 443 CG12608-PA 1..443 1..443 2313 100 Plus
CG9123-PA 434 CG9123-PA 1..434 1..443 2070 91 Plus