Clone Sequence Records
BO08589.3prime Sequence
901 bp (852 high quality bases) assembled on 2006-01-06
> BO08589.3prime
ATGGTCTAGAAAGCTTGCCTTCTTTTTCTGCTGCTTTGCCTTCCCCTTGG
AGGCTGGAGTGGGTTGCTGCTTGCGCTTCATTGGCTTCCTCTTCCGGTGG
CCGTGATCACTGGAGACATCGCTGTCGCTGTCGGAGAAGTCGTCGCTCTC
CTTTTCTTCCGATGAGTTGCTTTCTTCTGAGGATTCCTCGGCTTTCTGTT
GCGCCTTCTTTGCCTGTATCTTGTTCTTCTTCCCCTTTCCCTTCTTCTTC
TCGGCATCCAGATTCTTATCCTGCTCGTACTCGATGGTCACGAATCCCCG
AGGTGCTGCAGGCTTGGCACTTTGGTCAGACTCCACTTTCGCCTTTGGTT
TCTCCTCCACTTTAATGCGTTGTTCCACCGGTTGGACATTGCCGAACTGG
CGGAGATCCAGCAGGCCCAAGTCGGTGGGTCGGCAGTCCATGAAGCTGCT
GGCAATCTCCTCCAGCTTGCGCGTTTCCATGTCGATCTTCCAGACTTTGA
TTTCACCAGCGCTGGAGACGGTGGCCAGTAATTCGTTCAGATAGGCGATG
GCCTTGACCCTTGCCTCGTGTGCAAGAATGAAGGTGGGTGGTGTATCATC
CTCGTCCTTGAGGGAAATCCAGGCAATGTTGCCGTTGTCCAGGCCAGTTA
AACACTCGTTCCCATCCAGCCAGGTGATGCAAATGGGTTTCGCCGGCATC
TCAATGCGACGCATAACATGAGCGTTCTCGATGCCCCAGATCTCCAGAAC
CAATGGACCGCTAAGTGTGAAGTGATCGCCCTGCTTGGACCACGACAAGC
AGCCCGGTTGGAGACCCAGCGTAGCCTTGTTCTTTAAATTGGTCTTGTAG
GCGACGCGGCCATTGACCAGATCCAGGTGTTCAGCACCTGNTCGCCGCCC
A
BO08589.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:27:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12608-PA | 1332 | CG12608-RA | 476..1329 | 872..19 | 4270 | 100 | Minus |
CG9123-PA | 1305 | CG9123-RA | 476..1108 | 872..240 | 2665 | 96.8 | Minus |
CG9123-PA | 1305 | CG9123-RA | 1124..1302 | 197..19 | 745 | 96.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:31:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12608-RA | 1616 | CG12608-RA | 580..1463 | 901..19 | 4384 | 99.8 | Minus |
CG9123-RA | 1592 | CG9123-RA | 583..1439 | 901..19 | 3559 | 93.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:31:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15343010..15343507 | 19..516 | 2490 | 100 | Plus |
X | 23542271 | X | 15343733..15344046 | 589..901 | 1509 | 99.4 | Plus |
X | 23542271 | X | 15341222..15341535 | 589..901 | 1374 | 96.5 | Plus |
X | 23542271 | X | 15340707..15340996 | 227..516 | 1285 | 96.2 | Plus |
X | 23542271 | X | 15340526..15340704 | 19..197 | 805 | 96.6 | Plus |
X | 23542271 | X | 15343597..15343673 | 512..588 | 385 | 100 | Plus |
X | 23542271 | X | 15341087..15341162 | 513..588 | 350 | 97.4 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:31:29 has no hits.
BO08589.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:51:23 Download gff for
BO08589.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12608-PA | 447..1332 | 18..900 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:47:48 Download gff for
BO08589.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12608-PA | 447..1332 | 18..900 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:33:28 Download gff for
BO08589.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12608-RA | 581..1469 | 10..900 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:59:01 Download gff for
BO08589.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12608-RA | 581..1469 | 10..900 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:59:01 Download gff for
BO08589.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15343011..15343502 | 20..511 | 100 | <- | Plus |
X | 15343597..15343673 | 512..588 | 100 | <- | Plus |
X | 15343733..15344045 | 589..900 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:33:28 Download gff for
BO08589.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15237044..15237535 | 20..511 | 100 | <- | Plus |
arm_X | 15237630..15237706 | 512..588 | 100 | <- | Plus |
arm_X | 15237766..15238078 | 589..900 | 99 | | Plus |
BO08589.5prime Sequence
871 bp (858 high quality bases) assembled on 2006-01-06
> BO08589.5prime
GAAGTTATCAGTCGACATGCCGCCGGAAATGGAGATCATAGTGGGCACCT
ACGAGGAGGTCCTGCTGGGCTTCAAGCTCATCAAATCGCCGACTGACGGC
TTGACCGATTCCGTCAAATTTGAGCTGAAACAGACTTTTGCAGACAGCTC
CCATGCAGGATCCATTACATCGGTGGCCGTGCAGTGGCCTTGGGTGGCCA
GTGGCGGTACCGACGACAGGATCTTCGTCTACGACATGCGCACGCGGAAA
CAGTCGCAGATCATACTCTCGCACGCCGGAAGAGTGAACACACTGAAATT
CACACCTGACCTGTCGCACTTGCTCTCCGGGAGCGACGATGGCCATATGA
TCGCCACACGCGTGGGCAGCTGGACCAAAGAGGGTGATTGGCAGAAGGCC
CATGCCGGACAGGCCGTCACCCACATCAGTTGCCATCCCAGCAGCAAGTT
GGCCTTATCTTTGGGCGGCGACCAGGTGCTGAACACCTGGAATCTGGTCA
ATGGCCGCGTCGCCTACAAGACCAATTTAAAGAACAAGGCTACGCTGGGT
CTCCAACCGGGCTGCTTGTCGTGGTCCAAGCAGGGCGATCACTTCACACT
TAGCGGTCCATTGGTTCTGGAGATCTGGGGCATCGAGAACGCTCATGTTA
TGCGTCGCATTGAGATGCCGGCGAAACCCATTTGCATCACCTGGCTGGAT
GGGAACGAGTGTTTAACTGGCCTGGACAACGGCAACATTGCCTGGATTTC
CCTCAAGGACGAGGATGATACACCACCCACCTTCATTCTTGCACACGAGG
CAAGGGTCAAGGCCATCGCCTATCTGAACGAATTACTGGCCACCGTCTCC
AGCGCTGGTGAAATCAAGTCT
BO08589.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:27:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12608-PA | 1332 | CG12608-RA | 1..851 | 17..867 | 4255 | 100 | Plus |
CG9123-PA | 1305 | CG9123-RA | 1..851 | 17..867 | 3480 | 96.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:11:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12608-RA | 1616 | CG12608-RA | 134..985 | 16..867 | 4260 | 100 | Plus |
CG9123-RA | 1592 | CG9123-RA | 137..988 | 16..867 | 3795 | 96.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:11:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15343733..15344492 | 775..16 | 3800 | 100 | Minus |
X | 23542271 | X | 15341222..15341981 | 775..16 | 3395 | 96.4 | Minus |
X | 23542271 | X | 15343597..15343673 | 852..776 | 385 | 100 | Minus |
X | 23542271 | X | 15341087..15341162 | 851..776 | 350 | 97.4 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:11:03 has no hits.
BO08589.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:51:24 Download gff for
BO08589.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12608-PA | 1..856 | 17..871 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:47:49 Download gff for
BO08589.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12608-PA | 1..856 | 17..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:29:44 Download gff for
BO08589.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12608-RA | 134..990 | 16..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:52:13 Download gff for
BO08589.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12608-RA | 134..990 | 16..871 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:52:13 Download gff for
BO08589.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15343483..15343502 | 853..871 | 95 | <- | Minus |
X | 15343597..15343673 | 776..852 | 100 | <- | Minus |
X | 15343733..15344492 | 16..775 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:29:44 Download gff for
BO08589.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15237516..15237535 | 853..871 | 95 | <- | Minus |
arm_X | 15237630..15237706 | 776..852 | 100 | <- | Minus |
arm_X | 15237766..15238525 | 16..775 | 100 | | Minus |
BO08589.complete Sequence
1363 bp (1363 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631251
> BO08589.complete
GAAGTTATCAGTCGACATGCCGCCGGAAATGGAGATCATAGTGGGCACCT
ACGAGGAGGTCCTGCTGGGCTTCAAGCTCATCAAATCGCCGACTGACGGC
TTGACCGATTCCGTCAAATTTGAGCTGAAACAGACTTTTGCAGACAGCTC
CCATGCAGGATCCATTACATCGGTGGCCGTGCAGTGGCCTTGGGTGGCCA
GTGGCGGTACCGACGACAGGATCTTCGTCTACGACATGCGCACGCGGAAA
CAGTCGCAGATCATACTCTCGCACGCCGGAAGAGTGAACACACTGAAATT
CACACCTGACCTGTCGCACTTGCTCTCCGGGAGCGACGATGGCCATATGA
TCGCCACACGCGTGGGCAGCTGGACCAAAGAGGGTGATTGGCAGAAGGCC
CATGCCGGACAGGCCGTCACCCACATCAGTTGCCATCCCAGCAGCAAGTT
GGCCTTATCTTTGGGCGGCGACCAGGTGCTGAACACCTGGAATCTGGTCA
ATGGCCGCGTCGCCTACAAGACCAATTTAAAGAACAAGGCTACGCTGGGT
CTCCAACCGGGCTGCTTGTCGTGGTCCAAGCAGGGCGATCACTTCACACT
TAGCGGTCCATTGGTTCTGGAGATCTGGGGCATCGAGAACGCTCATGTTA
TGCGTCGCATTGAGATGCCGGCGAAACCCATTTGCATCACCTGGCTGGAT
GGGAACGAGTGTTTAACTGGCCTGGACAACGGCAACATTGCCTGGATTTC
CCTCAAGGACGAGGATGATACACCACCCACCTTCATTCTTGCACACGAGG
CAAGGGTCAAGGCCATCGCCTATCTGAACGAATTACTGGCCACCGTCTCC
AGCGCTGGTGAAATCAAAGTCTGGAAGATCGACATGGAAACGCGCAAGCT
GGAGGAGATTGCCAGCAGCTTCATGGACTGCCGACCCACCGACTTGGGCC
TGCTGGATCTCCGCCAGTTCGGCAATGTCCAACCGGTGGAACAACGCATT
AAAGTGGAGGAGAAACCAAAGGCGAAAGTGGAGTCTGACCAAAGTGCCAA
GCCTGCAGCACCTCGGGGATTCGTGACCATCGAGTACGAGCAGGATAAGA
ATCTGGATGCCGAGAAGAAGAAGGGAAAGGGGAAGAAGAACAAGATACAG
GCAAAGAAGGCGCAACAGAAAGCCGAGGAATCCTCAGAAGAAAGCAACTC
ATCGGAAGAAAAGGAGAGCGACGACTTCTCCGACAGCGACAGCGATGTCT
CCAGTGATCACGGCCACCGGAAGAGGAAGCCAATGAAGCGCAAGCAGCAA
CCCACTCCAGCCTCCAAGGGGAAGGCAAAGCAGCAGAAAAAGAAGGCAAG
CTTTCTAGACCAT
BO08589.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:46:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12608-RA | 1332 | CG12608-PA | 1..1329 | 17..1345 | 6645 | 100 | Plus |
CG9123-RA | 1305 | CG9123-PA | 1..1121 | 17..1137 | 4990 | 96.3 | Plus |
CG9123-RA | 1305 | CG9123-PA | 1124..1302 | 1167..1345 | 805 | 96.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:46:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12608-RA | 1616 | CG12608-RA | 134..1463 | 16..1345 | 6650 | 100 | Plus |
CG9123-RA | 1592 | CG9123-RA | 137..1258 | 16..1137 | 4995 | 96.3 | Plus |
CG9123-RA | 1592 | CG9123-RA | 1261..1439 | 1167..1345 | 805 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:46:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15343733..15344492 | 775..16 | 3800 | 100 | Minus |
X | 23542271 | X | 15341222..15341981 | 775..16 | 3395 | 96.4 | Minus |
X | 23542271 | X | 15343010..15343507 | 1345..848 | 2490 | 100 | Minus |
X | 23542271 | X | 15340707..15340996 | 1137..848 | 1285 | 96.2 | Minus |
X | 23542271 | X | 15340526..15340704 | 1345..1167 | 805 | 96.6 | Minus |
X | 23542271 | X | 15343597..15343673 | 852..776 | 385 | 100 | Minus |
X | 23542271 | X | 15341087..15341162 | 851..776 | 350 | 97.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:46:04 has no hits.
BO08589.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:11:27 Download gff for
BO08589.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12608-RA | 1..1332 | 17..1346 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:32:15 Download gff for
BO08589.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12608-RA | 123..1458 | 16..1354 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:01:48 Download gff for
BO08589.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12608-RA | 135..1452 | 17..1334 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:11:27 Download gff for
BO08589.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12608-RA | 123..1458 | 16..1354 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:26:02 Download gff for
BO08589.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12608-RA | 135..1452 | 17..1334 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:26:02 Download gff for
BO08589.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15343597..15343673 | 776..852 | 100 | <- | Minus |
X | 15343021..15343502 | 853..1334 | 100 | <- | Minus |
X | 15343733..15344491 | 17..775 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:01:48 Download gff for
BO08589.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15237054..15237535 | 853..1334 | 100 | <- | Minus |
arm_X | 15237630..15237706 | 776..852 | 100 | <- | Minus |
arm_X | 15237766..15238524 | 17..775 | 100 | | Minus |
BO08589.pep Sequence
Translation from 16 to 1363
> BO08589.pep
MPPEMEIIVGTYEEVLLGFKLIKSPTDGLTDSVKFELKQTFADSSHAGSI
TSVAVQWPWVASGGTDDRIFVYDMRTRKQSQIILSHAGRVNTLKFTPDLS
HLLSGSDDGHMIATRVGSWTKEGDWQKAHAGQAVTHISCHPSSKLALSLG
GDQVLNTWNLVNGRVAYKTNLKNKATLGLQPGCLSWSKQGDHFTLSGPLV
LEIWGIENAHVMRRIEMPAKPICITWLDGNECLTGLDNGNIAWISLKDED
DTPPTFILAHEARVKAIAYLNELLATVSSAGEIKVWKIDMETRKLEEIAS
SFMDCRPTDLGLLDLRQFGNVQPVEQRIKVEEKPKAKVESDQSAKPAAPR
GFVTIEYEQDKNLDAEKKKGKGKKNKIQAKKAQQKAEESSEESNSSEEKE
SDDFSDSDSDVSSDHGHRKRKPMKRKQQPTPASKGKAKQQKKKASFLDH
BO08589.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:14:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12608-PA | 443 | CG12608-PA | 1..443 | 1..443 | 2313 | 100 | Plus |
CG9123-PA | 434 | CG9123-PA | 1..434 | 1..443 | 2070 | 91 | Plus |