Clone Sequence Records
BO08591.3prime Sequence
877 bp (818 high quality bases) assembled on 2006-01-06
> BO08591.3prime
ATGGTCTAGAAAGCTTGCAATGAACTCGAATCCCTCATACTTGTAGTCCG
TCTCGATCCTCGTTTCGGGCAGCAGTGTCTTGCCCGCAATATCGAAGGCT
GTGATGAAGGTGGCCGTCTTGCCATTCAACTCCTCCGACTTAAGAGCCAC
GATTATTGAGTCATCGGTGCCGGGCAAGAACTTAAAGCTAGAGAAACCAT
GCGTGGGCGTTGTATTTTCAGGATCGAGCCGTACAGTCTCAACGTTGGTG
AAGCTTTCGTCGGCGGAGACCAGGACATTGCAGCCCATGTGCTCGTCCTT
GGTTTCGTTGTATTTCTCTTTCGAACACCGCCTAGGCAGGAAAAACCAGC
GATTCCTTTCCTCTGACCAGGTTCCACTCTCGTGGATCATGTAGCCCGGC
CAGGTTATTTGCATCGACTGCAGGCGCAACTGCTTGAAATTGTCCACCCA
GTTGAGCGACCTCACCTCGCCGGACGGAGTGATGGCCTTTACGTACATGG
GGTTATTGTTCTCGAAATCACCCGCACTTGTCGTCCACTCCTTGCCCATG
GAGCCCACATACAGCGTTTGCTCTTTCACTGTGGCCCATTCGGCCTTGAA
GCCCTTGGCACTGTGTCCGTCTCCATCGAGCAGGATCACCCAGGGAATGG
GCTTGTCATTCACAATCTCGTATATCAAACCCGTTCGGTCGTCGAAGGTG
AGCAGGCGCCCGTTGAAGGTGACTAGCTCAGATAGCTCCATTCCGCGGCC
CTTAAGGGCAAATGCTGATTCCAGGACTATCGGCGCCCCGTCATCCCAGC
TAATCTGGATCTCTGACCTGGCCACCGTGTAGGTAAGGTAGCCCTTCTTC
AGGTAGCTACGCCACGTGCTGCTCCCA
BO08591.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:27:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5276-PA | 1260 | CG5276-RA | 399..1257 | 877..19 | 4295 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 07:35:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5276-RB | 1608 | CG5276-RB | 496..1354 | 877..19 | 4295 | 100 | Minus |
| CG5276-RA | 1752 | CG5276-RA | 640..1498 | 877..19 | 4295 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 07:35:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11432377..11432940 | 877..314 | 2820 | 100 | Minus |
| 3R | 32079331 | 3R | 11432995..11433289 | 313..19 | 1475 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-01 07:35:19 has no hits.
BO08591.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:51:25 Download gff for
BO08591.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5276-PA | 400..1260 | 18..876 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:47:51 Download gff for
BO08591.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5276-PA | 400..1260 | 18..876 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:16:00 Download gff for
BO08591.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5276-RA | 641..1503 | 12..876 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:45:05 Download gff for
BO08591.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5276-RA | 641..1503 | 12..876 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:45:05 Download gff for
BO08591.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11432378..11432940 | 314..876 | 100 | -> | Minus |
| 3R | 11432995..11433294 | 12..313 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:16:00 Download gff for
BO08591.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7258100..7258662 | 314..876 | 100 | -> | Minus |
| arm_3R | 7258717..7259016 | 12..313 | 99 | | Minus |
BO08591.5prime Sequence
916 bp (776 high quality bases) assembled on 2006-01-06
> BO08591.5prime
GAAGTTATCAGTCGACATGCAGAGCCCTGCCTTCGCGTACCGGGAACACG
CAGAACACTCGCCGCGCGCCATGTACATGCGCGACTGGCGATCGGCCCTG
CGGACGCCCACGTACCGGATTGGGAATCGGACGGTGCGCTTTAACTATCA
CTTCGCCCTTCTGATTGTTTGCGCCTTCGTACTCGTCCTACTCTTCTACT
TTGCGCGCCAGGGATCGCACTCCTCCTCCGACGGCTACTGGCTGCGCCGC
AGTTACACGGATGCCCGGAGTCTGGACAATGGTGGTCCAGTGGTCCAGGC
CTACAATGCCACATATCCGCTCACGTCACCCATGGTGCTGCGTGGCGGTG
TGATAAACTACCGGATAGCCATGATTGCCGATCTGGACACCAGTTCCAAG
GTGAGCAAGGGCGATGGGAGCAGCACGTGGCGTAGCTACCTGAAGAAGGG
CTACCTTACCTACACGGTGGCCAGGTCAGAGATCCAGATTAGCTGGGATG
ACGGGGCGCCGATAGTCCTGGAATCAGCATTTGCCCTTAAGGGCCGCGGA
ATGGAGCTATCTGAGCTAGTCACCTTCAACGGGCGCCTGCTCACCTTCGA
CGACCGAACGGGTTTGATATACGAGATTGTGAATGACAAGCCCATTCCCT
GGGTGATCCTGCTCGATGGAGACGGACACAGTGCCAAGGGCTTCAAGGCC
GAATGGGCCACAGTGAAAGAGCAAACGCTGTATGTGGGCTCCATGGGCAA
GGAGTGGACGACAAGTGCGGGTGATTTCGAGAAACATAACCCCATGTACG
TAAAGGCCATCACTCCGTCCGGCGAGGTGAGGTCGCTCAACTGGGTGGAC
AATTTCAAGCAGTTGCGCCTGCAGTCGATGCAAATACCTGGCCGGGCTAC
ATGATCCACGAGAGTG
BO08591.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:27:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5276-PA | 1260 | CG5276-RA | 1..870 | 17..886 | 4300 | 99.7 | Plus |
| CG5276-PA | 1260 | CG5276-RA | 871..901 | 886..916 | 155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:55:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5276-RB | 1608 | CG5276-RB | 98..998 | 17..916 | 4450 | 99.7 | Plus |
| CG5276-RA | 1752 | CG5276-RA | 242..1142 | 17..916 | 4450 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:55:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11431979..11432879 | 17..916 | 4425 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:55:15 has no hits.
BO08591.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:51:26 Download gff for
BO08591.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5276-PA | 1..901 | 17..916 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:47:52 Download gff for
BO08591.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5276-PA | 1..901 | 17..916 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:32:30 Download gff for
BO08591.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5276-RA | 242..1142 | 17..916 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:08:45 Download gff for
BO08591.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5276-RA | 242..1142 | 17..916 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:08:45 Download gff for
BO08591.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11431979..11432879 | 17..916 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:32:30 Download gff for
BO08591.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7257701..7258601 | 17..916 | 99 | | Plus |
BO08591.complete Sequence
1291 bp (1291 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631252
> BO08591.complete
GAAGTTATCAGTCGACATGCAGAGCCCTGCCTTCGCGTACCGGGAACACG
CAGAACACTCGCCGCGCGCCATGTACATGCGCGACTGGCGATCGGCCCTG
CGGACGCCCACGTACCGGATTGGGAATCGGACGGTGCGCTTTAACTATCA
CTTCGCCCTTCTGATTGTTTGCGCCTTCGTACTCGTCCTACTCTTCTACT
TTGCGCGCCAGGGATCGCACTCCTCCTCCGACGGCTACTGGCTGCGCCGC
AGTTACACGGATGCCCGGAGTCTGGACAATGGTGGTCCAGTGGTCCAGGC
CTACAATGCCACATATCCGCTCACGTCACCCATGGTGCTGCGTGGCGGTG
TGATAAACTACCGGATAGCCATGATTGCCGATCTGGACACCAGTTCCAAG
GTGAGCAAGGGCGATGGGAGCAGCACGTGGCGTAGCTACCTGAAGAAGGG
CTACCTTACCTACACGGTGGCCAGGTCAGAGATCCAGATTAGCTGGGATG
ACGGGGCGCCGATAGTCCTGGAATCAGCATTTGCCCTTAAGGGCCGCGGA
ATGGAGCTATCTGAGCTAGTCACCTTCAACGGGCGCCTGCTCACCTTCGA
CGACCGAACGGGTTTGATATACGAGATTGTGAATGACAAGCCCATTCCCT
GGGTGATCCTGCTCGATGGAGACGGACACAGTGCCAAGGGCTTCAAGGCC
GAATGGGCCACAGTGAAAGAGCAAACGCTGTATGTGGGCTCCATGGGCAA
GGAGTGGACGACAAGTGCGGGTGATTTCGAGAACAATAACCCCATGTACG
TAAAGGCCATCACTCCGTCCGGCGAGGTGAGGTCGCTCAACTGGGTGGAC
AATTTCAAGCAGTTGCGCCTGCAGTCGATGCAAATAACCTGGCCGGGCTA
CATGATCCACGAGAGTGGAACCTGGTCAGAGGAAAGGAATCGCTGGTTTT
TCCTGCCTAGGCGGTGTTCGAAAGAGAAATACAACGAAACCAAGGACGAG
CACATGGGCTGCAATGTCCTGGTCTCCGCCGACGAAAGCTTCACCAACGT
TGAGACTGTACGGCTCGATCCTGAAAATACAACGCCCACGCATGGTTTCT
CTAGCTTTAAGTTCTTGCCCGGCACCGATGACTCAATAATCGTGGCTCTT
AAGTCGGAGGAGTTGAATGGCAAGACGGCCACCTTCATCACAGCCTTCGA
TATTGCGGGCAAGACACTGCTGCCCGAAACGAGGATCGAGACGGACTACA
AGTATGAGGGATTCGAGTTCATTGCAAGCTTTCTAGACCAT
BO08591.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:44:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5276-RB | 1260 | CG5276-PB | 1..1257 | 17..1273 | 6285 | 100 | Plus |
| CG5276-RA | 1260 | CG5276-PA | 1..1257 | 17..1273 | 6285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:44:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5276-RB | 1608 | CG5276-RB | 98..1354 | 17..1273 | 6285 | 100 | Plus |
| CG5276-RA | 1752 | CG5276-RA | 242..1498 | 17..1273 | 6285 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:44:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11431979..11432940 | 17..978 | 4810 | 100 | Plus |
| 3R | 32079331 | 3R | 11432995..11433289 | 979..1273 | 1475 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:44:54 has no hits.
BO08591.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:11:28 Download gff for
BO08591.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5276-RA | 1..1260 | 17..1274 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:32:17 Download gff for
BO08591.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5276-RA | 242..1503 | 17..1280 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:43 Download gff for
BO08591.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5276-RA | 242..1498 | 17..1275 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:11:28 Download gff for
BO08591.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5276-RA | 242..1503 | 17..1280 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:25:57 Download gff for
BO08591.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5276-RA | 242..1498 | 17..1275 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:25:57 Download gff for
BO08591.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11431979..11432940 | 17..978 | 100 | -> | Plus |
| 3R | 11432995..11433289 | 979..1275 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:43 Download gff for
BO08591.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7257701..7258662 | 17..978 | 100 | -> | Plus |
| arm_3R | 7258717..7259011 | 979..1275 | 99 | | Plus |
BO08591.pep Sequence
Translation from 16 to 1291
> BO08591.pep
MQSPAFAYREHAEHSPRAMYMRDWRSALRTPTYRIGNRTVRFNYHFALLI
VCAFVLVLLFYFARQGSHSSSDGYWLRRSYTDARSLDNGGPVVQAYNATY
PLTSPMVLRGGVINYRIAMIADLDTSSKVSKGDGSSTWRSYLKKGYLTYT
VARSEIQISWDDGAPIVLESAFALKGRGMELSELVTFNGRLLTFDDRTGL
IYEIVNDKPIPWVILLDGDGHSAKGFKAEWATVKEQTLYVGSMGKEWTTS
AGDFENNNPMYVKAITPSGEVRSLNWVDNFKQLRLQSMQITWPGYMIHES
GTWSEERNRWFFLPRRCSKEKYNETKDEHMGCNVLVSADESFTNVETVRL
DPENTTPTHGFSSFKFLPGTDDSIIVALKSEELNGKTATFITAFDIAGKT
LLPETRIETDYKYEGFEFIASFLDH
BO08591.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:14:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5276-PB | 419 | CG5276-PB | 1..419 | 1..419 | 2223 | 100 | Plus |
| CG5276-PA | 419 | CG5276-PA | 1..419 | 1..419 | 2223 | 100 | Plus |
