Clone Sequence Records
BO08594.3prime Sequence
883 bp (835 high quality bases) assembled on 2006-01-06
> BO08594.3prime
ATGGTCTAGAAAGCTTGCTTTGACAACTGCATCGGCTGGCCTGGATACAT
CGCTGGAGTTGTCGTCCTCCTCCATTTGATTTCCATCTAGCAGGCGCTGA
CGCTCCTCCTCGTTGGCATGACCATTCAGGTGGATCGGTGATCTAGACCT
GGAGCGGGTGCGGCTCCTCTCGTGCCGCTCGGCATGCCCATTGGCTATGT
TCAGGCCGGCCACGCCCATTTCGTGACCATCGCTGCTGGTCGAGGAAGTG
GTGGACGTGGTGCTCGACGTGGTGCTGCTGCTGTCGCTTTCGCTGTCCTC
GCTGGTGGAGTCCATGGGTGTGGGTTGTGGCTGCTGGGGAGGCTGTTGTC
TAGCCTGCAGCTCGCAAGCTGAACTGGGAGTGGGCGCCACCGCTGAGGGC
GGGGAAGCTGCGGCCGCTGCTGCTGCCGCTGGTCCAGCTGTCGCGGAACA
CGTGCGCAAGAGGTGGGTGCGCAGAAATTGATTCTCACGTGATAGTTGGC
GAATCTTATCATCCTGCGCTCGTAATTTGGCTCCAAACTCCTTGGATATG
TTCTGGGCCTTCGAATATCGATCTTCGATTTGCATGCACTCCTGGATGAG
CTCCTGCTTGCTCATCGTCTCCAAACGTTCGAGCCGCGCTCGCTCGTAGA
CATCGGAGAACTCCTTGGAAAGGAAGAGCACCTGATCTTCGGTCTGGGAG
CCAAAACAGTTGTCGTCGGAGTCATCTTTGTGCAGCTCCGACATGTGTTC
CTCCATTAGGAAGCGGTTCGTGTTGTACGGAACGAGCAAGGAGCGCGAAC
GAACCAGCTTGGTTCTGCTATTCTGTCGTTGATTCCCCTCAGCGTTGCTC
CTGCACCCGTTGACATATCGAGTTTCCACTGCG
BO08594.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:27:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3508-PB | 1083 | CG3508-RB | 259..1080 | 840..19 | 4110 | 100 | Minus |
CG3508-PA | 1050 | CG3508-RA | 226..1047 | 840..19 | 4110 | 100 | Minus |
CG3508-PB | 1083 | CG3508-RB | 215..258 | 883..840 | 220 | 100 | Minus |
CG3508-PA | 1050 | CG3508-RA | 182..225 | 883..840 | 220 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:37:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hexim-RA | 1515 | CG3508-RA | 305..1170 | 883..19 | 4305 | 99.9 | Minus |
Hexim-RB | 1548 | CG3508-RB | 338..1203 | 883..19 | 4305 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:37:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14660375..14660832 | 476..19 | 2290 | 100 | Minus |
3R | 32079331 | 3R | 14659903..14660317 | 883..470 | 1995 | 99.3 | Minus |
Blast to na_te.dros performed 2015-02-10 23:37:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2328..2541 | 446..229 | 197 | 56.4 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6743..6822 | 348..270 | 145 | 67.9 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2439..2551 | 431..314 | 138 | 59.3 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6762..6870 | 362..258 | 121 | 59.6 | Minus |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 641..784 | 271..420 | 114 | 57 | Plus |
BO08594.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:51:29 Download gff for
BO08594.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3508-PA | 182..1050 | 18..883 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:47:57 Download gff for
BO08594.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3508-PA | 182..1050 | 18..883 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:05:01 Download gff for
BO08594.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hexim-RB | 335..1200 | 19..883 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:56:45 Download gff for
BO08594.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hexim-RB | 338..1203 | 19..883 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:56:45 Download gff for
BO08594.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14659903..14660310 | 477..883 | 99 | -> | Minus |
3R | 14660375..14660832 | 19..476 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:05:01 Download gff for
BO08594.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10485625..10486032 | 477..883 | 99 | -> | Minus |
arm_3R | 10486097..10486554 | 19..476 | 100 | | Minus |
BO08594.5prime Sequence
884 bp (818 high quality bases) assembled on 2006-01-06
> BO08594.5prime
GAAGTTATCAGTCGACATGGCTGAAGCTGTAAAAAATGAAAGTGGCTCCC
AACAACGACCTTTGGATAGCGGCGGAGGAGGGGGCGCCAGTGGCGGAGGC
GGTGTCGCTGTAGGAGGCGGCTCGGGAATGCCGAAGAGGAAACATCGGCG
GGGAAAAAAATCCAAGATGCAGCCCAAGAAGACCAAGAACCATTATCCGC
AGTGGAAACTCGATATGTCAACGGGTGCAGGAGCAACGCTGGAGGGGAAT
CAACGACAGAATAGCAGAACCAAGCTGGTTCGTTCGCGCTCCTTGCTCGT
TCCGTACAACACGAACCGCTTCCTAATGGAGGAACACATGTCGGAGCTGC
ACAAAGATGACTCCGACGACAACTGTTTTGGCTCCCAGACCGAAGATCAG
GTGCTCTTCCTTTCCAAGGAGTTCTCCGATGTCTACGAGCGAGCGCGGCT
CGAACGTTTGGAGACGATGAGCAAGCAGGAGCTCATCCAGGAGTGCATGC
AAATCGAAGATCGATATTCGAAGGCCCAGAACATATCCAAGGAGTTTGGA
GCCAAATTACGAGCGCAGGATGATAAGATTCGCCAACTATCACGTGAGAA
TCAATTTCTGCGCACCCACCTCTTGCGCACGTGTTCCGCGACAGCTGGAC
CAGCGGCAGCAGCAGCGGCCGCAGCTTCCCCGCCCTCAGCGGTGGCGCCC
ACTCCCAGTTCAGCTTGCGAGCTGCAGGCTAGACAACAGCCTCCCCAGCA
GCCACAACCCACACCCATGGACTCCACCAGCGAGGACAGCGAAAGCGACA
GCAGCAGCACCACGTCGAGCACCACGTCCACCACTTTCTCGACCAGCAGC
GATGGTCACGAAATGGGCGTGGCCGGCCTGAACA
BO08594.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:27:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3508-PA | 1050 | CG3508-RA | 1..868 | 17..884 | 4315 | 99.8 | Plus |
CG3508-PB | 1083 | CG3508-RB | 55..901 | 38..884 | 4210 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:57:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hexim-RA | 1515 | CG3508-RA | 122..991 | 15..884 | 4335 | 99.9 | Plus |
Hexim-RB | 1548 | CG3508-RB | 173..1024 | 33..884 | 4230 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:57:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14659743..14660317 | 38..612 | 2845 | 99.7 | Plus |
3R | 32079331 | 3R | 14660375..14660653 | 606..884 | 1380 | 99.6 | Plus |
Blast to na_te.dros performed 2015-02-11 17:57:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2328..2541 | 636..853 | 197 | 56.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6743..6822 | 734..812 | 145 | 67.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2439..2551 | 651..768 | 138 | 59.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6762..6870 | 720..824 | 121 | 59.6 | Plus |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 641..784 | 811..662 | 114 | 57 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2769..2873 | 746..852 | 108 | 60 | Plus |
BO08594.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:51:30 Download gff for
BO08594.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3508-PA | 1..867 | 17..883 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:47:58 Download gff for
BO08594.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3508-PA | 1..867 | 17..883 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:22:53 Download gff for
BO08594.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hexim-RA | 119..987 | 15..883 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:29:34 Download gff for
BO08594.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hexim-RA | 122..990 | 15..883 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:29:34 Download gff for
BO08594.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14660375..14660652 | 606..883 | 99 | | Plus |
3R | 14659559..14659582 | 15..38 | 100 | -> | Plus |
3R | 14659744..14660310 | 39..605 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:22:53 Download gff for
BO08594.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10485281..10485304 | 15..38 | 100 | -> | Plus |
arm_3R | 10485466..10486032 | 39..605 | 100 | -> | Plus |
arm_3R | 10486097..10486374 | 606..883 | 99 | | Plus |
BO08594.complete Sequence
1081 bp (1081 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631254
> BO08594.complete
GAAGTTATCAGTCGACATGGCTGAAGCTGTAAAAAATGAAAGTGGCTCCC
AACAACGACCTTTGGATAGCGGCGGAGGAGGGGGCGCCAGTGGCGGAGGC
GGTGTCGCTGTAGGAGGCGGCTCGGGAATGCCGAAGAGGAAACATCGGCG
GGGAAAAAAATCCAAGATGCAGCCCAAGAAGACCAAGAACCATTATCCGC
AGTGGAAACTCGATATGTCAACGGGTGCAGGAGCAACGCTGGAGGGGAAT
CAACGACAGAATAGCAGAACCAAGCTGGTTCGTTCGCGCTCCTTGCTCGT
TCCGTACAACACGAACCGCTTCCTAATGGAGGAACACATGTCGGAGCTGC
ACAAAGATGACTCCGACGACAACTGTTTTGGCTCCCAGACCGAAGATCAG
GTGCTCTTCCTTTCCAAGGAGTTCTCCGATGTCTACGAGCGAGCGCGGCT
CGAACGTTTGGAGACGATGAGCAAGCAGGAGCTCATCCAGGAGTGCATGC
AAATCGAAGATCGATATTCGAAGGCCCAGAACATATCCAAGGAGTTTGGA
GCCAAATTACGAGCGCAGGATGATAAGATTCGCCAACTATCACGTGAGAA
TCAATTTCTGCGCACCCACCTCTTGCGCACGTGTTCCGCGACAGCTGGAC
CAGCGGCAGCAGCAGCGGCCGCAGCTTCCCCGCCCTCAGCGGTGGCGCCC
ACTCCCAGTTCAGCTTGCGAGCTGCAGGCTAGACAACAGCCTCCCCAGCA
GCCACAACCCACACCCATGGACTCCACCAGCGAGGACAGCGAAAGCGACA
GCAGCAGCACCACGTCGAGCACCACGTCCACCACTTCCTCGACCAGCAGC
GATGGTCACGAAATGGGCGTGGCCGGCCTGAACATAGCCAATGGGCATGC
CGAGCGGCACGAGAGGAGCCGCACCCGCTCCAGGTCTAGATCACCGATCC
ACCTGAATGGTCATGCCAACGAGGAGGAGCGTCAGCGCCTGCTAGATGGA
AATCAAATGGAGGAGGACGACAACTCCAGCGATGTATCCAGGCCAGCCGA
TGCAGTTGTCAAAGCAAGCTTTCTAGACCAT
BO08594.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:17:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hexim-RA | 1050 | CG3508-PA | 1..1047 | 17..1063 | 5235 | 100 | Plus |
Hexim-RB | 1083 | CG3508-PB | 50..1080 | 33..1063 | 5140 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:17:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hexim-RA | 1515 | CG3508-RA | 122..1170 | 15..1063 | 5245 | 100 | Plus |
Hexim-RB | 1548 | CG3508-RB | 173..1203 | 33..1063 | 5140 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:17:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14659743..14660317 | 38..612 | 2845 | 99.7 | Plus |
3R | 32079331 | 3R | 14660375..14660832 | 606..1063 | 2290 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 16:17:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2328..2541 | 636..853 | 197 | 56.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6743..6822 | 734..812 | 145 | 67.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2439..2551 | 651..768 | 138 | 59.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6762..6870 | 720..824 | 121 | 59.6 | Plus |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 641..784 | 811..662 | 114 | 57 | Minus |
BO08594.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:11:22 Download gff for
BO08594.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3508-RA | 1..1050 | 17..1064 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:32:08 Download gff for
BO08594.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3508-RA | 119..1167 | 15..1063 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:57 Download gff for
BO08594.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hexim-RA | 121..1167 | 17..1065 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:11:22 Download gff for
BO08594.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3508-RA | 119..1167 | 15..1063 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:15:17 Download gff for
BO08594.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hexim-RA | 124..1170 | 17..1065 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:15:17 Download gff for
BO08594.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14659561..14659582 | 17..38 | 100 | -> | Plus |
3R | 14659744..14660310 | 39..605 | 100 | -> | Plus |
3R | 14660375..14660832 | 606..1065 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:57 Download gff for
BO08594.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10485283..10485304 | 17..38 | 100 | -> | Plus |
arm_3R | 10485466..10486032 | 39..605 | 100 | -> | Plus |
arm_3R | 10486097..10486554 | 606..1065 | 99 | | Plus |
BO08594.pep Sequence
Translation from 16 to 1081
> BO08594.pep
MAEAVKNESGSQQRPLDSGGGGGASGGGGVAVGGGSGMPKRKHRRGKKSK
MQPKKTKNHYPQWKLDMSTGAGATLEGNQRQNSRTKLVRSRSLLVPYNTN
RFLMEEHMSELHKDDSDDNCFGSQTEDQVLFLSKEFSDVYERARLERLET
MSKQELIQECMQIEDRYSKAQNISKEFGAKLRAQDDKIRQLSRENQFLRT
HLLRTCSATAGPAAAAAAAASPPSAVAPTPSSACELQARQQPPQQPQPTP
MDSTSEDSESDSSSTTSSTTSTTSSTSSDGHEMGVAGLNIANGHAERHER
SRTRSRSRSPIHLNGHANEEERQRLLDGNQMEEDDNSSDVSRPADAVVKA
SFLDH
BO08594.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:19:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hexim-PA | 349 | CG3508-PA | 1..349 | 1..349 | 1791 | 100 | Plus |
Hexim-PB | 360 | CG3508-PB | 1..360 | 1..349 | 1769 | 96.9 | Plus |