Clone BO08594 Report

Search the DGRC for BO08594

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:85
Well:94
Vector:pDNR-Dual
Associated Gene/TranscriptCG3508-RA
Protein status:BO08594.pep: validated full length
Sequenced Size:1081

Clone Sequence Records

BO08594.3prime Sequence

883 bp (835 high quality bases) assembled on 2006-01-06

> BO08594.3prime
ATGGTCTAGAAAGCTTGCTTTGACAACTGCATCGGCTGGCCTGGATACAT
CGCTGGAGTTGTCGTCCTCCTCCATTTGATTTCCATCTAGCAGGCGCTGA
CGCTCCTCCTCGTTGGCATGACCATTCAGGTGGATCGGTGATCTAGACCT
GGAGCGGGTGCGGCTCCTCTCGTGCCGCTCGGCATGCCCATTGGCTATGT
TCAGGCCGGCCACGCCCATTTCGTGACCATCGCTGCTGGTCGAGGAAGTG
GTGGACGTGGTGCTCGACGTGGTGCTGCTGCTGTCGCTTTCGCTGTCCTC
GCTGGTGGAGTCCATGGGTGTGGGTTGTGGCTGCTGGGGAGGCTGTTGTC
TAGCCTGCAGCTCGCAAGCTGAACTGGGAGTGGGCGCCACCGCTGAGGGC
GGGGAAGCTGCGGCCGCTGCTGCTGCCGCTGGTCCAGCTGTCGCGGAACA
CGTGCGCAAGAGGTGGGTGCGCAGAAATTGATTCTCACGTGATAGTTGGC
GAATCTTATCATCCTGCGCTCGTAATTTGGCTCCAAACTCCTTGGATATG
TTCTGGGCCTTCGAATATCGATCTTCGATTTGCATGCACTCCTGGATGAG
CTCCTGCTTGCTCATCGTCTCCAAACGTTCGAGCCGCGCTCGCTCGTAGA
CATCGGAGAACTCCTTGGAAAGGAAGAGCACCTGATCTTCGGTCTGGGAG
CCAAAACAGTTGTCGTCGGAGTCATCTTTGTGCAGCTCCGACATGTGTTC
CTCCATTAGGAAGCGGTTCGTGTTGTACGGAACGAGCAAGGAGCGCGAAC
GAACCAGCTTGGTTCTGCTATTCTGTCGTTGATTCCCCTCAGCGTTGCTC
CTGCACCCGTTGACATATCGAGTTTCCACTGCG

BO08594.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:27:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG3508-PB 1083 CG3508-RB 259..1080 840..19 4110 100 Minus
CG3508-PA 1050 CG3508-RA 226..1047 840..19 4110 100 Minus
CG3508-PB 1083 CG3508-RB 215..258 883..840 220 100 Minus
CG3508-PA 1050 CG3508-RA 182..225 883..840 220 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:37:39
Subject Length Description Subject Range Query Range Score Percent Strand
Hexim-RA 1515 CG3508-RA 305..1170 883..19 4305 99.9 Minus
Hexim-RB 1548 CG3508-RB 338..1203 883..19 4305 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:37:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14660375..14660832 476..19 2290 100 Minus
3R 32079331 3R 14659903..14660317 883..470 1995 99.3 Minus
Blast to na_te.dros performed 2015-02-10 23:37:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2328..2541 446..229 197 56.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6743..6822 348..270 145 67.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2439..2551 431..314 138 59.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6762..6870 362..258 121 59.6 Minus
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 641..784 271..420 114 57 Plus

BO08594.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:51:29 Download gff for BO08594.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3508-PA 182..1050 18..883 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:47:57 Download gff for BO08594.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3508-PA 182..1050 18..883 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:05:01 Download gff for BO08594.3prime
Subject Subject Range Query Range Percent Splice Strand
Hexim-RB 335..1200 19..883 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:56:45 Download gff for BO08594.3prime
Subject Subject Range Query Range Percent Splice Strand
Hexim-RB 338..1203 19..883 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:56:45 Download gff for BO08594.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 14659903..14660310 477..883 99 -> Minus
3R 14660375..14660832 19..476 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:05:01 Download gff for BO08594.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10485625..10486032 477..883 99 -> Minus
arm_3R 10486097..10486554 19..476 100   Minus

BO08594.5prime Sequence

884 bp (818 high quality bases) assembled on 2006-01-06

> BO08594.5prime
GAAGTTATCAGTCGACATGGCTGAAGCTGTAAAAAATGAAAGTGGCTCCC
AACAACGACCTTTGGATAGCGGCGGAGGAGGGGGCGCCAGTGGCGGAGGC
GGTGTCGCTGTAGGAGGCGGCTCGGGAATGCCGAAGAGGAAACATCGGCG
GGGAAAAAAATCCAAGATGCAGCCCAAGAAGACCAAGAACCATTATCCGC
AGTGGAAACTCGATATGTCAACGGGTGCAGGAGCAACGCTGGAGGGGAAT
CAACGACAGAATAGCAGAACCAAGCTGGTTCGTTCGCGCTCCTTGCTCGT
TCCGTACAACACGAACCGCTTCCTAATGGAGGAACACATGTCGGAGCTGC
ACAAAGATGACTCCGACGACAACTGTTTTGGCTCCCAGACCGAAGATCAG
GTGCTCTTCCTTTCCAAGGAGTTCTCCGATGTCTACGAGCGAGCGCGGCT
CGAACGTTTGGAGACGATGAGCAAGCAGGAGCTCATCCAGGAGTGCATGC
AAATCGAAGATCGATATTCGAAGGCCCAGAACATATCCAAGGAGTTTGGA
GCCAAATTACGAGCGCAGGATGATAAGATTCGCCAACTATCACGTGAGAA
TCAATTTCTGCGCACCCACCTCTTGCGCACGTGTTCCGCGACAGCTGGAC
CAGCGGCAGCAGCAGCGGCCGCAGCTTCCCCGCCCTCAGCGGTGGCGCCC
ACTCCCAGTTCAGCTTGCGAGCTGCAGGCTAGACAACAGCCTCCCCAGCA
GCCACAACCCACACCCATGGACTCCACCAGCGAGGACAGCGAAAGCGACA
GCAGCAGCACCACGTCGAGCACCACGTCCACCACTTTCTCGACCAGCAGC
GATGGTCACGAAATGGGCGTGGCCGGCCTGAACA

BO08594.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:27:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG3508-PA 1050 CG3508-RA 1..868 17..884 4315 99.8 Plus
CG3508-PB 1083 CG3508-RB 55..901 38..884 4210 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:57:20
Subject Length Description Subject Range Query Range Score Percent Strand
Hexim-RA 1515 CG3508-RA 122..991 15..884 4335 99.9 Plus
Hexim-RB 1548 CG3508-RB 173..1024 33..884 4230 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:57:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14659743..14660317 38..612 2845 99.7 Plus
3R 32079331 3R 14660375..14660653 606..884 1380 99.6 Plus
Blast to na_te.dros performed 2015-02-11 17:57:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2328..2541 636..853 197 56.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6743..6822 734..812 145 67.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2439..2551 651..768 138 59.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6762..6870 720..824 121 59.6 Plus
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 641..784 811..662 114 57 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2769..2873 746..852 108 60 Plus

BO08594.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:51:30 Download gff for BO08594.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3508-PA 1..867 17..883 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:47:58 Download gff for BO08594.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3508-PA 1..867 17..883 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:22:53 Download gff for BO08594.5prime
Subject Subject Range Query Range Percent Splice Strand
Hexim-RA 119..987 15..883 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:29:34 Download gff for BO08594.5prime
Subject Subject Range Query Range Percent Splice Strand
Hexim-RA 122..990 15..883 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:29:34 Download gff for BO08594.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 14660375..14660652 606..883 99   Plus
3R 14659559..14659582 15..38 100 -> Plus
3R 14659744..14660310 39..605 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:22:53 Download gff for BO08594.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10485281..10485304 15..38 100 -> Plus
arm_3R 10485466..10486032 39..605 100 -> Plus
arm_3R 10486097..10486374 606..883 99   Plus

BO08594.complete Sequence

1081 bp (1081 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ631254

> BO08594.complete
GAAGTTATCAGTCGACATGGCTGAAGCTGTAAAAAATGAAAGTGGCTCCC
AACAACGACCTTTGGATAGCGGCGGAGGAGGGGGCGCCAGTGGCGGAGGC
GGTGTCGCTGTAGGAGGCGGCTCGGGAATGCCGAAGAGGAAACATCGGCG
GGGAAAAAAATCCAAGATGCAGCCCAAGAAGACCAAGAACCATTATCCGC
AGTGGAAACTCGATATGTCAACGGGTGCAGGAGCAACGCTGGAGGGGAAT
CAACGACAGAATAGCAGAACCAAGCTGGTTCGTTCGCGCTCCTTGCTCGT
TCCGTACAACACGAACCGCTTCCTAATGGAGGAACACATGTCGGAGCTGC
ACAAAGATGACTCCGACGACAACTGTTTTGGCTCCCAGACCGAAGATCAG
GTGCTCTTCCTTTCCAAGGAGTTCTCCGATGTCTACGAGCGAGCGCGGCT
CGAACGTTTGGAGACGATGAGCAAGCAGGAGCTCATCCAGGAGTGCATGC
AAATCGAAGATCGATATTCGAAGGCCCAGAACATATCCAAGGAGTTTGGA
GCCAAATTACGAGCGCAGGATGATAAGATTCGCCAACTATCACGTGAGAA
TCAATTTCTGCGCACCCACCTCTTGCGCACGTGTTCCGCGACAGCTGGAC
CAGCGGCAGCAGCAGCGGCCGCAGCTTCCCCGCCCTCAGCGGTGGCGCCC
ACTCCCAGTTCAGCTTGCGAGCTGCAGGCTAGACAACAGCCTCCCCAGCA
GCCACAACCCACACCCATGGACTCCACCAGCGAGGACAGCGAAAGCGACA
GCAGCAGCACCACGTCGAGCACCACGTCCACCACTTCCTCGACCAGCAGC
GATGGTCACGAAATGGGCGTGGCCGGCCTGAACATAGCCAATGGGCATGC
CGAGCGGCACGAGAGGAGCCGCACCCGCTCCAGGTCTAGATCACCGATCC
ACCTGAATGGTCATGCCAACGAGGAGGAGCGTCAGCGCCTGCTAGATGGA
AATCAAATGGAGGAGGACGACAACTCCAGCGATGTATCCAGGCCAGCCGA
TGCAGTTGTCAAAGCAAGCTTTCTAGACCAT

BO08594.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:17:41
Subject Length Description Subject Range Query Range Score Percent Strand
Hexim-RA 1050 CG3508-PA 1..1047 17..1063 5235 100 Plus
Hexim-RB 1083 CG3508-PB 50..1080 33..1063 5140 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:17:42
Subject Length Description Subject Range Query Range Score Percent Strand
Hexim-RA 1515 CG3508-RA 122..1170 15..1063 5245 100 Plus
Hexim-RB 1548 CG3508-RB 173..1203 33..1063 5140 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:17:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14659743..14660317 38..612 2845 99.7 Plus
3R 32079331 3R 14660375..14660832 606..1063 2290 100 Plus
Blast to na_te.dros performed 2014-11-27 16:17:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2328..2541 636..853 197 56.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6743..6822 734..812 145 67.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2439..2551 651..768 138 59.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6762..6870 720..824 121 59.6 Plus
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 641..784 811..662 114 57 Minus

BO08594.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:11:22 Download gff for BO08594.complete
Subject Subject Range Query Range Percent Splice Strand
CG3508-RA 1..1050 17..1064 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:32:08 Download gff for BO08594.complete
Subject Subject Range Query Range Percent Splice Strand
CG3508-RA 119..1167 15..1063 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:57 Download gff for BO08594.complete
Subject Subject Range Query Range Percent Splice Strand
Hexim-RA 121..1167 17..1065 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:11:22 Download gff for BO08594.complete
Subject Subject Range Query Range Percent Splice Strand
CG3508-RA 119..1167 15..1063 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:15:17 Download gff for BO08594.complete
Subject Subject Range Query Range Percent Splice Strand
Hexim-RA 124..1170 17..1065 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:15:17 Download gff for BO08594.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14659561..14659582 17..38 100 -> Plus
3R 14659744..14660310 39..605 100 -> Plus
3R 14660375..14660832 606..1065 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:57 Download gff for BO08594.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10485283..10485304 17..38 100 -> Plus
arm_3R 10485466..10486032 39..605 100 -> Plus
arm_3R 10486097..10486554 606..1065 99   Plus

BO08594.pep Sequence

Translation from 16 to 1081

> BO08594.pep
MAEAVKNESGSQQRPLDSGGGGGASGGGGVAVGGGSGMPKRKHRRGKKSK
MQPKKTKNHYPQWKLDMSTGAGATLEGNQRQNSRTKLVRSRSLLVPYNTN
RFLMEEHMSELHKDDSDDNCFGSQTEDQVLFLSKEFSDVYERARLERLET
MSKQELIQECMQIEDRYSKAQNISKEFGAKLRAQDDKIRQLSRENQFLRT
HLLRTCSATAGPAAAAAAAASPPSAVAPTPSSACELQARQQPPQQPQPTP
MDSTSEDSESDSSSTTSSTTSTTSSTSSDGHEMGVAGLNIANGHAERHER
SRTRSRSRSPIHLNGHANEEERQRLLDGNQMEEDDNSSDVSRPADAVVKA
SFLDH

BO08594.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:19:15
Subject Length Description Subject Range Query Range Score Percent Strand
Hexim-PA 349 CG3508-PA 1..349 1..349 1791 100 Plus
Hexim-PB 360 CG3508-PB 1..360 1..349 1769 96.9 Plus