Clone Sequence Records
BO08605.3prime Sequence
926 bp (870 high quality bases) assembled on 2006-01-09
> BO08605.3prime
ATGGTCTAGAAAGCTTGCTTCGGTTGCAACAATTTGTACTACGCCCAATT
TGCGAGCATTATCCTGATGCATTTTACTGTTCGCATGGCTTTTCATGTTG
TACTTGTAGCGAAAGTTAACATTGCAAACCTCGCACCAATATGGACGTTC
GCCGGTGTGAATGAGCTCGTGCTCCCGCAGCCGCGTCCGCTGATAGAATC
CCTTCAAGCAGACGTCGCACTGGAGCGGCCTCTTCTCGTGCGTCATCTCG
TGGCGCTTGAGCTTGTTGGGATCCGAGTAGCTCTTGCTGCACCGCTGGCA
CTTGTAGGCGTTCGCATCGGTGTGCGATTTGATATGCCAGCCCAGGGCGT
ACTTGGAGGCGTAGTGCTTTTGGCACAGCTTGCACTGATATCGCACACTT
TCTCGAGGCTTGGGCATGGGCTTGGGATTGATGCGCTTCACAATGAGACG
AGGCGCCGCATTGTGGACCTCGCTCTCGTGCTTTTGGCGAGCTCCGGGAT
AGGCGAATGTTTCGCTGCAGAAGCCGCAGGCGAAGGGAGTTTCTCCCCGA
TGACGGATGCGTATGTGCATGTTGCGCATGTAGGCGTCGTAGAATGTCTT
TGGACATTCGGTGCACTGGTAGTTCTTGGTGCGAGTGTGCCGCAGCATGT
GGATGCGCAAATTGTGTGACATGCGGAACGCCTGGCCGCACTGATCGCAC
ACAAAGTTCGGCGGCTTGGCGCGTAGCTGGGCGCGCCGTATAAGATTCCT
CTCTTCTTTGGTCTTTGGGTTGGCACTGCGCTTCGGTTTCTGTTCACCAG
CTGCCTTTTCCTTAGCTTTGGGCTTACTCGCGATTGGTGCTCCCTTCCTG
AGTCTTGCTTTTTCCTTCCCTGTATATTGATCTAATAGCTCCTTAAAGAT
CTTGGGCCCCAGAGCCACACTGAGTG
BO08605.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:27:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6689-PA | 1842 | CG6689-RA | 932..1839 | 926..19 | 4515 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 07:25:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6689-RA | 1909 | CG6689-RA | 981..1888 | 926..19 | 4525 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 07:25:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11218513..11218966 | 473..926 | 2255 | 99.8 | Plus |
| 3R | 32079331 | 3R | 11218103..11218443 | 134..474 | 1705 | 100 | Plus |
| 3R | 32079331 | 3R | 11217919..11218037 | 19..137 | 595 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-01 07:25:17 has no hits.
BO08605.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:51:34 Download gff for
BO08605.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6689-PA | 932..1842 | 16..926 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:48:04 Download gff for
BO08605.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6689-PA | 932..1842 | 16..926 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:14:18 Download gff for
BO08605.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6689-RA | 981..1892 | 15..926 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:43:46 Download gff for
BO08605.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6689-RA | 981..1892 | 15..926 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:43:46 Download gff for
BO08605.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11217914..11218036 | 15..136 | 98 | <- | Plus |
| 3R | 11218106..11218441 | 137..472 | 100 | <- | Plus |
| 3R | 11218513..11218966 | 473..926 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:14:18 Download gff for
BO08605.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7043636..7043758 | 15..136 | 98 | <- | Plus |
| arm_3R | 7043828..7044163 | 137..472 | 100 | <- | Plus |
| arm_3R | 7044235..7044688 | 473..926 | 99 | | Plus |
BO08605.complete Sequence
1873 bp assembled on 2008-11-10
> BO08605.complete
GAAGTTATCAGTCGACATGCGATGTGCCGTGCCCAATTGCCGAAATTTCT
CTGACTGCCGCTCCAAAAGGAATGCGGCTCAGCAGCAACGCTTGGGCTTC
TTCCGCTTCCCCAAGTGCCCGGATACGTTTAAGGCTTGGCTAGCATTCTG
CGGCTACACGGAGGAGTCCTTGAAATTGAAGAATCCCTGCATTTGCATCG
AACATTTCAAGGATGAGGACATCGAGGGATCCCTGAAATTCGAAATGGGA
TTGGCAAAAAAGCGCACTTTGCGACCAGGTGCAGTTCCCTGCGTGAACAA
AAGCCAGGAAAGTGGATCGGATAGAGCCCGTAAGGAGAGGTCACAGCGCC
GCAGAAACCAGGAGCTAGTGGCTGAGCTATTGGCGGAGGAGGAGGCCAAG
CTAATCCACCCGGAGGCTACTTCATTTGAGCAGGATAGTGTGTATTTATC
GGAAACTGTAACCATGGAATTGGATCCACTTTCGGGCGAGGAAAAGTTGG
AAGAGCTGCAAAAGTGCCGCACATGCTACAATGACTTCACCGCTGACTTC
AGGGCCAAGGATCTCTTTGACCCGGCCAACAGTGTCCTGCTCTTTCACAT
CGAAGTCATAAGTGGTGTCTGGATCAGTCACAAACCAGACGAGCCGCGCC
TCATGTGCCCTGCGTGTAAATCGGCCCTGGATCAGGCCATCGATTTCCGG
GAGATGTGCATCAGCACCGAGCTCAAGCTCAGCCAAGCCAAGCCCTCAAC
TGATGAAGTGCAGATCGAGGCTGAGAATGAGAATCCAATATCATCGGATC
ACGATTTGATATCTGATACGGAGAACACTAATGTGGAAGAGATTGAAGAT
GCAGGTGGAGATCATGTTGAAGATGAAGCGACATCAGATGACCAAACAAG
TCAAGAGGCAGTCGACGAAGTCGCTGAATCGCCCGCCGCCCAGGATCCAC
TCAGTGTGGCTCTGGGGGCCAAGATCTTTAAGGAGCTATTAGATCAATAT
ACAGGGAAGGAAAAAGCAAGACTCAGGAAGGGAGCACCAATCGCGAGTAA
GCCCAAAGCTAAGGAAAAGGCAGCTGGTGAACAGAAACCGAAGCGCAGTG
CCAACCCAAAGACCAAAGAAGAGAGGAATCTTATACGGCGCGCCCAGCTA
CGCGCCAAGCCGCCGAACTTTGTGTGCGATCAGTGCGGCCAGGCGTTCCG
CATGTCACACAATTTGCGCATCCACATGCTGCGGCACACTCGCACCAAGA
ACTACCAGTGCACCGAATGTCCAAAGACATTCTACGACGCCTACATGCGC
AACATGCACATACGCATCCGTCATCGGGGAGAAACTCCCTTCGCCTGCGG
CTTCTGCAGCGAAACATTCGCCTATCCCGGAGCTCGCCAAAAGCACGAGA
GCGAGGTCCACAATGCGGCGCCTCGTCTCATTGTGAAGCGCATCAATCCC
AAGCCCATGCCCAAGCCTCGAGAAAGTGTGCGATATCAGTGCAAGCTGTG
CCAAAAGCACTACGCCTCCAAGTACGCCCTGGGCTGGCATATCAAATCGC
ACACCGATGCGAACGCCTACAAGTGCCAGCGGTGCAGCAAGAGCTACTCG
GATCCCAACAAGCTCAAGCGCCACGAGATGACGCACGAGAAGAGGCCGCT
CCAGTGCGACGTCTGCTTGAAGGGATTCTATCAGCGGACGCGGCTGCGGG
AGCACGAGCTCATTCACACCGGCGAACGTCCATATTGGTGCGAGGTTTGC
AATGTTAACTTTCGCTACAAGTACAACATGAAAAGCCATGCGAACAGTAA
AATGCATCAGGATAATGCTCGCAAATTGGGCGTAGTACAAATTGTTGCAA
CCGAAGCAAGCTTTCTAGACCAT
BO08605.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:45:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6689-RA | 1842 | CG6689-PA | 1..1839 | 17..1855 | 9195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:45:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6689-RA | 1909 | CG6689-RA | 50..1888 | 17..1855 | 9195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:45:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11218513..11219292 | 1401..622 | 3900 | 100 | Minus |
| 3R | 32079331 | 3R | 11219352..11219726 | 622..248 | 1875 | 100 | Minus |
| 3R | 32079331 | 3R | 11218103..11218443 | 1740..1400 | 1705 | 100 | Minus |
| 3R | 32079331 | 3R | 11219783..11220015 | 249..17 | 1165 | 100 | Minus |
| 3R | 32079331 | 3R | 11217919..11218037 | 1855..1737 | 595 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:45:50 has no hits.
BO08605.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:50:24 Download gff for
BO08605.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6689-RA | 30..1872 | 17..1859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:36:01 Download gff for
BO08605.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6689-RA | 50..1888 | 17..1857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:10:09 Download gff for
BO08605.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6689-RA | 30..1868 | 17..1857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:41:43 Download gff for
BO08605.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6689-RA | 50..1888 | 17..1857 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:41:43 Download gff for
BO08605.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11218106..11218441 | 1402..1737 | 100 | <- | Minus |
| 3R | 11217916..11218036 | 1738..1857 | 98 | <- | Minus |
| 3R | 11218513..11219291 | 623..1401 | 100 | <- | Minus |
| 3R | 11219352..11219725 | 249..622 | 100 | <- | Minus |
| 3R | 11219784..11220015 | 17..248 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:36:01 Download gff for
BO08605.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7043638..7043758 | 1738..1857 | 98 | <- | Minus |
| arm_3R | 7043828..7044163 | 1402..1737 | 100 | <- | Minus |
| arm_3R | 7044235..7045013 | 623..1401 | 100 | <- | Minus |
| arm_3R | 7045074..7045447 | 249..622 | 100 | <- | Minus |
| arm_3R | 7045506..7045737 | 17..248 | 100 | | Minus |
BO08605.pep Sequence
Translation from 16 to 1873
> BO08605.pep
MRCAVPNCRNFSDCRSKRNAAQQQRLGFFRFPKCPDTFKAWLAFCGYTEE
SLKLKNPCICIEHFKDEDIEGSLKFEMGLAKKRTLRPGAVPCVNKSQESG
SDRARKERSQRRRNQELVAELLAEEEAKLIHPEATSFEQDSVYLSETVTM
ELDPLSGEEKLEELQKCRTCYNDFTADFRAKDLFDPANSVLLFHIEVISG
VWISHKPDEPRLMCPACKSALDQAIDFREMCISTELKLSQAKPSTDEVQI
EAENENPISSDHDLISDTENTNVEEIEDAGGDHVEDEATSDDQTSQEAVD
EVAESPAAQDPLSVALGAKIFKELLDQYTGKEKARLRKGAPIASKPKAKE
KAAGEQKPKRSANPKTKEERNLIRRAQLRAKPPNFVCDQCGQAFRMSHNL
RIHMLRHTRTKNYQCTECPKTFYDAYMRNMHIRIRHRGETPFACGFCSET
FAYPGARQKHESEVHNAAPRLIVKRINPKPMPKPRESVRYQCKLCQKHYA
SKYALGWHIKSHTDANAYKCQRCSKSYSDPNKLKRHEMTHEKRPLQCDVC
LKGFYQRTRLREHELIHTGERPYWCEVCNVNFRYKYNMKSHANSKMHQDN
ARKLGVVQIVATEASFLDH
BO08605.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:15:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6689-PA | 613 | CG6689-PA | 1..613 | 1..613 | 3286 | 100 | Plus |
| CG17803-PB | 587 | CG17803-PB | 10..552 | 94..618 | 804 | 32.1 | Plus |
| CG17803-PA | 587 | CG17803-PA | 10..552 | 94..618 | 804 | 32.1 | Plus |
| CG18764-PA | 409 | CG18764-PA | 4..389 | 166..563 | 391 | 27 | Plus |
| Meics-PB | 571 | CG8474-PB | 19..481 | 165..600 | 330 | 23.8 | Plus |
